GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA005451-TA|BGIBMGA005451-PA|IPR000727|Target SNARE
coiled-coil region
         (112 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    23   1.1  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    20   6.1  

>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
          protein MRJP2 protein.
          Length = 452

 Score = 22.6 bits (46), Expect = 1.1
 Identities = 14/46 (30%), Positives = 20/46 (43%), Gaps = 1/46 (2%)

Query: 16 VATEDTIENENE-RMAEELSGKISSLKYISIELGNEVRDQEKLLRG 60
          +A +  I  EN  R  E+    I   KY   + G+E R Q  +  G
Sbjct: 13 IACQGAIVRENSPRNLEKSLNVIHEWKYFDYDFGSEERRQAAIQSG 58


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 20.2 bits (40), Expect = 6.1
 Identities = 8/32 (25%), Positives = 17/32 (53%)

Query: 28  RMAEELSGKISSLKYISIELGNEVRDQEKLLR 59
           R  + L G++   + + +  G+E+  QE+  R
Sbjct: 624 RYVDNLLGELGGERLLKLAQGDEMCGQEQAFR 655


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.314    0.135    0.372 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,671
Number of Sequences: 429
Number of extensions: 899
Number of successful extensions: 2
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2
length of query: 112
length of database: 140,377
effective HSP length: 50
effective length of query: 62
effective length of database: 118,927
effective search space:  7373474
effective search space used:  7373474
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.5 bits)
S2: 39 (19.8 bits)