GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA005448-TA|BGIBMGA005448-PA|IPR008994|Nucleic
acid-binding, OB-fold, IPR004591|Replication factor-a protein 1 Rpa1,
IPR007199|Replication factor-A protein 1, N-terminal,
IPR004365|nucleic acid binding, OB-fold, tRNA/helicase-type,
IPR013955|Replication factor-A, C-terminal
         (585 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              26   0.99 
AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II ...    26   0.99 
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             25   1.3  
AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc fi...    23   5.3  
X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor pro...    23   9.3  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 25.8 bits (54), Expect = 0.99
 Identities = 14/34 (41%), Positives = 17/34 (50%)

Query: 393  VNISAKSGNFTGGSNEWISFSEAESRQLGTGEKG 426
            VN   K G  T    + I  +EA SRQ G+G  G
Sbjct: 1900 VNARGKDGMTTEEMRKLIERNEAPSRQTGSGHGG 1933


>AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II
           protein.
          Length = 190

 Score = 25.8 bits (54), Expect = 0.99
 Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 1/40 (2%)

Query: 133 VEPKAANLDSSMLSVKMTNPISSLSPYQNKWVI-RARVMS 171
           V P+A NL + ML+V  +  I++    ++ W+  R RV S
Sbjct: 139 VTPEAKNLINQMLTVNPSKRITASEALKHPWICQRERVAS 178


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 25.4 bits (53), Expect = 1.3
 Identities = 20/73 (27%), Positives = 35/73 (47%), Gaps = 5/73 (6%)

Query: 347  GARLTEFNGSKSLSCLSSTMLRLNPDVPEAHKLRGWYDNGGADADIVNISAKSGNFTGGS 406
            GA + E +   S S  ++ M ++  DV E     G YD  GA+   ++   +S   TG  
Sbjct: 1243 GAGIAETSAGTSNSRGAAQMSKVPRDVSE-----GIYDGSGANGSFLDNLIRSSLETGIP 1297

Query: 407  NEWISFSEAESRQ 419
             +  + +EA ++Q
Sbjct: 1298 RDQRAMTEARNQQ 1310


>AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc
           finger domain-Z3 isoform protein.
          Length = 92

 Score = 23.4 bits (48), Expect = 5.3
 Identities = 8/16 (50%), Positives = 11/16 (68%)

Query: 459 DQENGLFRCEKCNREY 474
           +Q + L+ CE CNR Y
Sbjct: 30  EQSDTLYVCEFCNRRY 45


>X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor
           protein.
          Length = 168

 Score = 22.6 bits (46), Expect = 9.3
 Identities = 8/18 (44%), Positives = 11/18 (61%)

Query: 120 PKPAPVTPKFTAKVEPKA 137
           P+P P  P+   + EPKA
Sbjct: 51  PQPRPPHPRLRREAEPKA 68


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.314    0.131    0.375 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 162,205
Number of Sequences: 429
Number of extensions: 6838
Number of successful extensions: 19
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 14
Number of HSP's gapped (non-prelim): 6
length of query: 585
length of database: 140,377
effective HSP length: 61
effective length of query: 524
effective length of database: 114,208
effective search space: 59844992
effective search space used: 59844992
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 46 (22.6 bits)