GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA005447-TA|BGIBMGA005447-PA|IPR000101|Gamma-
glutamyltranspeptidase
         (586 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC664.09 |ggt1||gamma-glutamyltranspeptidase Ggt1 |Schizosacch...   270   5e-73
SPAC56E4.06c |ggt2||gamma-glutamyltranspeptidase Ggt2|Schizosacc...   259   7e-70
SPBC16A3.17c |||membrane transporter|Schizosaccharomyces pombe|c...    30   1.0  
SPACUNK4.17 |||NAD binding dehydrogenase family protein|Schizosa...    29   1.4  
SPBC725.01 |||aspartate aminotransferase|Schizosaccharomyces pom...    28   4.1  
SPAC5H10.06c |adh4||alcohol dehydrogenase Adh4|Schizosaccharomyc...    27   5.5  
SPBC582.04c |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    27   7.2  
SPCC16A11.04 |snx12||sorting nexin Snx12 |Schizosaccharomyces po...    27   9.6  

>SPAC664.09 |ggt1||gamma-glutamyltranspeptidase Ggt1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 630

 Score =  270 bits (661), Expect = 5e-73
 Identities = 177/546 (32%), Positives = 271/546 (49%), Gaps = 19/546 (3%)

Query: 42  GSQHVRYQ--RAAVAANGHECATVGREILEKNGSAVDAAIATLFCEGISCAQCMGLGGGF 99
           GSQ V  +     VA     C+ +G  IL+  G+AVDAAIA+  C G   +   G+GGG 
Sbjct: 89  GSQRVVVEGKNGVVATEEETCSQIGVGILKAGGNAVDAAIASGICIGAVNSFSSGIGGGG 148

Query: 100 LATVYDASTGRVRVLNARERAPAAMTLNMYENAS--STVGGLAIAVPGELRGYGALYQEY 157
              +   + G    LN RE APA  + NM+   S  S VGGL++AVPGE+ GY   ++ Y
Sbjct: 149 FMLIRHPN-GTAHSLNFRETAPAGASKNMFHGNSTLSQVGGLSVAVPGEIAGYERAWKMY 207

Query: 158 GRLPWRELVQPTAELCRRGHRVT-EYMGRVLQTFSDRIMAEPSMRELYVNKATGKVWNVG 216
           G LPW +L +PT  L R G  +  E   R+ +         P   +++  +  G   +VG
Sbjct: 208 GSLPWHKLFEPTIRLMRDGMPMPKELASRIRRPEFSYFKTHPDWSKIFAPE--GVFLHVG 265

Query: 217 DYITDPTFAKTLEIIAEEGPEAIHDGSLTARLVQDIQNFGGIITEDDLRNYRVEWQEPIA 276
           +    P  A TLE IA+ GPE  + G +  RLV+ +Q  GGI+T +D+ N+ V  +EPI 
Sbjct: 266 EKFYRPALASTLEEIAKFGPEVFYTGKIAERLVKFVQQQGGILTMEDMANFSVVVEEPIY 325

Query: 277 IPLTEQHTLYSVPLPGSGSVLAFILNMLRGWIGVETVAPVG---SDLYWHRIVETFKYAY 333
               ++  + +   P SG  L   LN+L      E  + +G   +D+  H ++ET K+  
Sbjct: 326 GNFYDREVI-TCGSPCSGEALILGLNVLSKVDLSEGTSILGCEMTDIGVHHLIETMKWMS 384

Query: 334 AKRTGLGDPSRHNLNQSILELEQNLANAEWAASYRGRVDDTRTYNDWKHYEAVFEGADDH 393
           A RT L DP+ +N    +    + L + E+A   R  + + RT+ D+ HY+A ++  +DH
Sbjct: 385 AGRTVLADPTFYNNTDHV----EQLLSLEYADEIRNNISNERTF-DFTHYKAEYDFPNDH 439

Query: 394 GTAHVIVVAPDGSVVSATSTINFIWGSQRRSQSLGFILNNEMDDFAIPNRDSSYGLPPSP 453
           GT H+ V+  D   V  T++IN ++GSQ      G ILN+ MDDFA P   +++GL PSP
Sbjct: 440 GTTHLSVIDKDNMAVGLTASINLMFGSQLLEPETGIILNDHMDDFASPGIVNAFGLSPSP 499

Query: 454 ANMLAPGLQPLXXXXXXXXXXXXXXXXXXXXXXXXTKITTQVALMATHIIVEGHDLPDVI 513
            N +APG +P                         ++I T V          G  L + +
Sbjct: 500 YNFIAPGKRP-QSSAVPTILVYNGEVEMVLGGSGGSRIVTAVLDTIIKKYKWGKSLLESV 558

Query: 514 RRPRLHHQLLPMEIQHEANFDSDVIASLRSKGHATTELGPTAGFAAMVAIHRDRSGYLVP 573
             PR HHQL+P  +  +   + +V+ +L   GH    +     F+ + A+ R  +G L  
Sbjct: 559 ESPRFHHQLMPNIVYIDETVEIEVLRALEKFGHIVDLIPVQYPFSEIQAVFR-TNGTLYG 617

Query: 574 ATDHRR 579
            +D R+
Sbjct: 618 LSDSRK 623


>SPAC56E4.06c |ggt2||gamma-glutamyltranspeptidase
           Ggt2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 611

 Score =  259 bits (635), Expect = 7e-70
 Identities = 176/552 (31%), Positives = 273/552 (49%), Gaps = 17/552 (3%)

Query: 40  WTGSQHVRYQRAAVAANGHECATVGREILEKNGSAVDAAIATLFCEGISCAQCMGLGGG- 98
           +TG + VR +R AVA+    C+ +G  +L   G+AVDAAIA+ FC G+      G+GGG 
Sbjct: 72  FTGHK-VRGRRGAVASEVPVCSDIGVSMLADGGNAVDAAIASTFCIGVVNFFSSGIGGGG 130

Query: 99  FLATVYDASTGRVRVLNARERAPAAMTLNMYENAS--STVGGLAIAVPGELRGYGALYQE 156
           F+   +   T +   L  RE AP  ++ +M++     + VG L+IA+PGEL G    ++ 
Sbjct: 131 FMLIKHPNETAQS--LTFREIAPGNVSKHMFDKNPMLAQVGPLSIAIPGELAGLYEAWKS 188

Query: 157 YGRLPWRELVQPTAELCRRGHRVTEYMGRVLQTFS-DRIMAEPSMRELYVNKATGKVWNV 215
           +G L W +L++P  +L R G  VT  M RVL+      ++ +P  + + +    GKV   
Sbjct: 189 HGLLDWSKLLEPNVKLAREGFPVTRAMERVLKLPEMAHLLKDPIWQPILM--PNGKVLRA 246

Query: 216 GDYITDPTFAKTLEIIAEEGPEAIHDGSLTARLVQDIQNFGGIITEDDLRNYRVEWQEPI 275
           GD +  P +AKTLEIIA +G E  + G LT  +V+ IQ+ GGI+T +D  NY   + + +
Sbjct: 247 GDKMFRPAYAKTLEIIANKGIEPFYRGELTNSMVKFIQDNGGIVTVEDFGNYSTVFADAL 306

Query: 276 AIPLTEQHTLYSVPLPGSGSVLAFILNMLRGWIGVETVAPVGSDLYWHRIVETFKYAYAK 335
                  H +Y+  LP SG  L   LN+L G+  + T + +      H  VE  K+  A 
Sbjct: 307 HTSY-RGHDVYTCTLPTSGPALIEGLNILDGY-PLNTPS-LAFPKRLHLEVEAMKWLSAG 363

Query: 336 RTGLGDPSRHNLNQSILELEQNLANAEWAASYRGRVDDTRTYNDWKHYEAVFEGADDHGT 395
           RT  GDP    L+   L++   L + E+A+  R  +  ++TY  W+HY   ++    HGT
Sbjct: 364 RTQFGDPDFLPLDH--LDVVSKLLSKEFASQIRNNISLSKTY-PWEHYNPSYDLPISHGT 420

Query: 396 AHVIVVAPDGSVVSATSTINFIWGSQRRSQSLGFILNNEMDDFAIPNRDSSYGLPPSPAN 455
            HV  V  +   VS TST+N ++GSQ      G + N++MDDF+IP   +++ L PSP N
Sbjct: 421 THVSTVDSNNLAVSITSTVNLLFGSQLMDPVTGVVFNDQMDDFSIPGASNAFNLSPSPWN 480

Query: 456 MLAPGLQPLXXXXXXXXXXXXXXXXXXXXXXXXTKITTQVALMATHIIVEGHDLPDVIRR 515
            + P  +P                         ++I T V       I   +D+  ++  
Sbjct: 481 FIEPFKRPQSSSAPTILTDINGDFEMALGASGGSRIVTAVLDSIIKRIDMDYDIESMVAS 540

Query: 516 PRLHHQLLPMEIQHEANFDSDVIASLRSKGHATTELGP-TAGFAAMVAIHRDRSGYLVPA 574
            R HHQLLP  +  E+ F   V   ++  GH    L       + + A+ R  S Y    
Sbjct: 541 ARPHHQLLPDILILESGFSKSVATRMKKYGHKVWRLKQHDTPLSQIQAVTRHHSEY-YGM 599

Query: 575 TDHRRIGSVDGF 586
           +D R+ G    +
Sbjct: 600 SDPRKYGQAAAY 611


>SPBC16A3.17c |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 599

 Score = 29.9 bits (64), Expect = 1.0
 Identities = 38/131 (29%), Positives = 54/131 (41%), Gaps = 22/131 (16%)

Query: 40  WTGSQHVRYQRAAVAANGHECATVGREIL-------EKNGSAVDAAIATLFCEGISCAQC 92
           W GS +V    A + A G  C  +GR+I+          GSA+  A   +    I C   
Sbjct: 135 WIGSAYVLASNAVLPAVGVFCNILGRKIVLYICIFFFMLGSALCGASQNMIWL-IVCRAI 193

Query: 93  MGLGGGFLATVYDASTGRVRVLNARERAPAAMTLNMYENASSTVGGLAIAVPGELRGYGA 152
            GLGGG + ++ +     +  L  R          MY    +T  G A+ V G + G GA
Sbjct: 194 QGLGGGGIISLVNIIISDITPLRTRP---------MYSGILATAWGAAL-VAGPIIG-GA 242

Query: 153 LYQEYGRLPWR 163
           + Q   R  WR
Sbjct: 243 ICQ---RTTWR 250


>SPACUNK4.17 |||NAD binding dehydrogenase family
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 405

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 30/114 (26%), Positives = 50/114 (43%), Gaps = 16/114 (14%)

Query: 230 IIAEEGPEAIHDGSLTARLVQDIQNFGGIITEDDLRNYRVEWQEPI----AIPLTEQHTL 285
           I++E G   +  G+    L +    FGG +  D ++  RVEW +P     A+P+ E+   
Sbjct: 229 IMSESGGPVVEQGTHFCDLSR---YFGGDVEIDSIKVNRVEWDDPSGKLNAMPVDEKTIP 285

Query: 286 YSVPLP---------GSGSVLAFILNMLRGWIGVETVAPVGSDLYWHRIVETFK 330
               +P           G V AF  N+       +T   V +D Y+ RIV+ ++
Sbjct: 286 PEERIPRFTAASWKYKDGGVGAFTHNITLQGAKYDTCIEVQADGYYLRIVDLYE 339


>SPBC725.01 |||aspartate aminotransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 437

 Score = 27.9 bits (59), Expect = 4.1
 Identities = 11/33 (33%), Positives = 17/33 (51%)

Query: 376 TYNDWKHYEAVFEGADDHGTAHVIVVAPDGSVV 408
           T   +K+Y+    G D  G    +  APDGS++
Sbjct: 180 TVKSYKYYDPATRGLDIKGMLSDLTSAPDGSII 212


>SPAC5H10.06c |adh4||alcohol dehydrogenase Adh4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 422

 Score = 27.5 bits (58), Expect = 5.5
 Identities = 17/69 (24%), Positives = 33/69 (47%), Gaps = 1/69 (1%)

Query: 385 AVFEGADDHGTAHVIVVAPDGSVVSATSTINF-IWGSQRRSQSLGFILNNEMDDFAIPNR 443
           A +EG D      + ++A + +  +A+    F I   + R   +  I  + M   ++ + 
Sbjct: 161 ADYEGVDKSSKPQLPLIAINTTAGTASEMTRFAIITEETRHIKMAIIDKHTMPILSVNDP 220

Query: 444 DSSYGLPPS 452
           ++ YGLPPS
Sbjct: 221 ETMYGLPPS 229


>SPBC582.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 601

 Score = 27.1 bits (57), Expect = 7.2
 Identities = 16/66 (24%), Positives = 32/66 (48%)

Query: 186 VLQTFSDRIMAEPSMRELYVNKATGKVWNVGDYITDPTFAKTLEIIAEEGPEAIHDGSLT 245
           + Q+F +       +R L+ ++ + KV +V   +  PT  K  E  +++   A+H   + 
Sbjct: 340 IAQSFLEPQTRSTFLRYLFSDEVSVKVCHVLKELRSPTGEKLFESFSDDPITAVHFEVMN 399

Query: 246 ARLVQD 251
            + VQD
Sbjct: 400 CKGVQD 405


>SPCC16A11.04 |snx12||sorting nexin Snx12 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1010

 Score = 26.6 bits (56), Expect = 9.6
 Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 2/61 (3%)

Query: 349 QSILELEQNLANAEWAASYRGRVDDTRTYNDWKHYEAVFEGADDHGTAHVIVVAPDGSVV 408
           QS+L++  + A       +  R + +R  + W   E + E  DD   AH+I  AP   +V
Sbjct: 389 QSLLQILSDSAAVSCFLEFMERKNRSRYLHFWLVVEGLKESQDDPLNAHMI--APFSDIV 446

Query: 409 S 409
           S
Sbjct: 447 S 447


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.320    0.135    0.415 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,438,276
Number of Sequences: 5004
Number of extensions: 95023
Number of successful extensions: 234
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 220
Number of HSP's gapped (non-prelim): 8
length of query: 586
length of database: 2,362,478
effective HSP length: 77
effective length of query: 509
effective length of database: 1,977,170
effective search space: 1006379530
effective search space used: 1006379530
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 56 (26.6 bits)