GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA005446-TA|BGIBMGA005446-PA|IPR008197|Whey acidic
protein, core region, IPR001450|4Fe-4S ferredoxin, iron-sulfur binding
         (119 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha...    27   1.0  
SPBC3H7.14 |mug176||BRCT domain protein|Schizosaccharomyces pomb...    25   2.4  
SPAC1687.22c |puf3|SPAC222.02c|RNA-binding protein Puf3 |Schizos...    25   2.4  
SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||...    25   3.2  
SPAC1565.07c |||TATA binding protein interacting protein |Schizo...    25   4.2  
SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces ...    24   5.6  
SPAC23E2.03c |ste7||meiotic suppressor protein Ste7|Schizosaccha...    24   7.4  
SPAC25B8.12c |||nucleotide-sugar phosphatase |Schizosaccharomyce...    23   9.7  
SPAC24C9.11 |||MIF4G/MA4 domain protein|Schizosaccharomyces pomb...    23   9.7  

>SPBC776.09 |ste13||ATP-dependent RNA helicase
           Ste13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 485

 Score = 26.6 bits (56), Expect = 1.0
 Identities = 14/50 (28%), Positives = 25/50 (50%)

Query: 55  LEIVLSKLSTEKSILFRSLTDDYELCLTKCRTSSYSVLHENSYKDPTHKH 104
           L  + SKL   +SI+F + T+  EL   K     YS  + ++    +H++
Sbjct: 272 LNTLFSKLQINQSIIFCNSTNRVELLAKKITELGYSCFYSHAKMLQSHRN 321


>SPBC3H7.14 |mug176||BRCT domain protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 406

 Score = 25.4 bits (53), Expect = 2.4
 Identities = 11/33 (33%), Positives = 20/33 (60%)

Query: 67  SILFRSLTDDYELCLTKCRTSSYSVLHENSYKD 99
           S L ++L+DDYE  L  C  S+ S +  ++ ++
Sbjct: 315 SFLDQTLSDDYEFGLITCSDSNESSMSNDAQRE 347


>SPAC1687.22c |puf3|SPAC222.02c|RNA-binding protein Puf3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 732

 Score = 25.4 bits (53), Expect = 2.4
 Identities = 12/38 (31%), Positives = 20/38 (52%)

Query: 40  EHCVSCCLDPGKRDMLEIVLSKLSTEKSILFRSLTDDY 77
           E C+S   D  +R +L  ++S+ +   SIL   + D Y
Sbjct: 631 ERCISYISDVDRRRILNKIISEKAENCSILMLMMKDKY 668


>SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1367

 Score = 25.0 bits (52), Expect = 3.2
 Identities = 10/18 (55%), Positives = 11/18 (61%)

Query: 72  SLTDDYELCLTKCRTSSY 89
           +L D Y LC TKC  S Y
Sbjct: 369 NLKDKYALCSTKCCKSEY 386


>SPAC1565.07c |||TATA binding protein interacting protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1220

 Score = 24.6 bits (51), Expect = 4.2
 Identities = 13/33 (39%), Positives = 17/33 (51%)

Query: 53  DMLEIVLSKLSTEKSILFRSLTDDYELCLTKCR 85
           D LEI  S LST     F    D ++ C T+C+
Sbjct: 153 DSLEIYHSNLSTLLPNNFELCIDVFQKCTTQCQ 185


>SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 2344

 Score = 24.2 bits (50), Expect = 5.6
 Identities = 11/27 (40%), Positives = 14/27 (51%)

Query: 80   CLTKCRTSSYSVLHENSYKDPTHKHCF 106
            CL  C+    SV  E S  +PT K C+
Sbjct: 1988 CLQLCKIMGGSVSVEVSQNNPTFKICY 2014


>SPAC23E2.03c |ste7||meiotic suppressor protein
           Ste7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 569

 Score = 23.8 bits (49), Expect = 7.4
 Identities = 8/20 (40%), Positives = 10/20 (50%)

Query: 85  RTSSYSVLHENSYKDPTHKH 104
           R   Y+V H      P+HKH
Sbjct: 40  RIKGYAVYHHGFLSSPSHKH 59


>SPAC25B8.12c |||nucleotide-sugar phosphatase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 303

 Score = 23.4 bits (48), Expect = 9.7
 Identities = 12/37 (32%), Positives = 19/37 (51%)

Query: 43  VSCCLDPGKRDMLEIVLSKLSTEKSILFRSLTDDYEL 79
           ++ C DP K D++  +L K   EK    ++L    EL
Sbjct: 173 MAVCEDPDKLDVVRDILGKFPREKFATTQALEFCIEL 209


>SPAC24C9.11 |||MIF4G/MA4 domain protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 775

 Score = 23.4 bits (48), Expect = 9.7
 Identities = 14/52 (26%), Positives = 26/52 (50%), Gaps = 3/52 (5%)

Query: 53  DMLEIVLSKLSTEKSILFRSLTDDYELCLTKCRTSSYSVLHENSYKDPTHKH 104
           D L IV + L+T    L+R + +D+   L +     +  L+++  K+P   H
Sbjct: 316 DQLAIVYAALATA---LYRIVGNDFGAHLLQTLVERFLQLYKSKEKEPLSSH 364


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.135    0.434 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 572,327
Number of Sequences: 5004
Number of extensions: 19525
Number of successful extensions: 39
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 31
Number of HSP's gapped (non-prelim): 9
length of query: 119
length of database: 2,362,478
effective HSP length: 65
effective length of query: 54
effective length of database: 2,037,218
effective search space: 110009772
effective search space used: 110009772
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 48 (23.4 bits)