Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA005446-TA|BGIBMGA005446-PA|IPR008197|Whey acidic
protein, core region, IPR001450|4Fe-4S ferredoxin, iron-sulfur binding
(119 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_03_0028 - 9080650-9080667,9080701-9080794,9082099-9082185,908... 40 4e-04
02_01_0538 + 3932581-3932632,3933014-3933219 31 0.19
09_02_0154 + 5055946-5058721,5058754-5058770 27 5.3
01_06_1454 + 37498513-37499154 27 5.3
01_03_0232 + 14030821-14030904,14031029-14031374,14031475-140315... 27 5.3
11_04_0450 - 17847676-17847841,17848024-17848131,17848223-178483... 26 7.0
06_03_1333 - 29410014-29410052,29410071-29410322,29410601-294106... 26 9.2
05_06_0267 - 26784861-26784896,26785324-26785404,26785530-267857... 26 9.2
02_01_0520 + 3761051-3761107,3761420-3761822,3761960-3762129 26 9.2
>11_03_0028 -
9080650-9080667,9080701-9080794,9082099-9082185,
9082276-9082333,9083535-9083598,9083837-9083898,
9083976-9084027,9084410-9084530,9085369-9085463
Length = 216
Score = 40.3 bits (90), Expect = 4e-04
Identities = 17/46 (36%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Query: 61 KLSTEKSILFRSLTDDYELCLTKCRTSSYSVLHENSYKDPTHKHCF 106
KL + + + + ++ C+ +CR SS SV+HEN+Y H HCF
Sbjct: 80 KLKVARPVTSGTYRNVFDFCMGRCRHSSASVVHENAYASDFH-HCF 124
>02_01_0538 + 3932581-3932632,3933014-3933219
Length = 85
Score = 31.5 bits (68), Expect = 0.19
Identities = 16/59 (27%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
Query: 56 EIVLSKLSTEKSILFRSLTDDYELCLTKCRTSSYSVLHENSYKDPT--HKHCFGDEPPG 112
E+ +K+ ++S F+ + C T C Y+ H +++ K C GD PPG
Sbjct: 20 EVAAAKMCHDRSQTFKGMCFRTSNCNTSCTNEGYTGGHCTTFRRRCVCTKECGGDSPPG 78
>09_02_0154 + 5055946-5058721,5058754-5058770
Length = 930
Score = 26.6 bits (56), Expect = 5.3
Identities = 14/47 (29%), Positives = 26/47 (55%), Gaps = 3/47 (6%)
Query: 51 KRDMLEIVLSK-LSTEKSILFRSLTDDYELCLTKCRTSSYSVLHENS 96
+R +L++ +K KS L D + +TKC+T +S+L +N+
Sbjct: 485 QRSLLQVAWTKEYERPKSFRMHDLVRD--ITVTKCKTEKFSLLADNT 529
>01_06_1454 + 37498513-37499154
Length = 213
Score = 26.6 bits (56), Expect = 5.3
Identities = 8/14 (57%), Positives = 10/14 (71%)
Query: 101 THKHCFGDEPPGSH 114
T + C+G EPPG H
Sbjct: 86 TRRMCYGQEPPGDH 99
>01_03_0232 +
14030821-14030904,14031029-14031374,14031475-14031599,
14031927-14032023,14032459-14032691,14032765-14032885,
14033319-14033374,14033630-14033703,14034193-14034239,
14034458-14034507,14034860-14034922,14035160-14035240,
14035517-14035627,14035714-14035789,14036216-14036358,
14036775-14036848,14037304-14037409,14037492-14037547,
14038272-14038378,14041150-14041598
Length = 832
Score = 26.6 bits (56), Expect = 5.3
Identities = 15/42 (35%), Positives = 20/42 (47%)
Query: 78 ELCLTKCRTSSYSVLHENSYKDPTHKHCFGDEPPGSHSGNKM 119
EL LT S+ ++L S K K CF D + SGN +
Sbjct: 652 ELVLTGASKSNVAMLLVPSVKSVKRKSCFTDASDEATSGNSL 693
>11_04_0450 -
17847676-17847841,17848024-17848131,17848223-17848377,
17848471-17848560,17848650-17848748,17848862-17848928,
17849028-17849124,17849357-17849492,17849579-17849634,
17849718-17849801,17849909-17850125
Length = 424
Score = 26.2 bits (55), Expect = 7.0
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 60 SKLSTEKSILFRSLTDDYELCLTKCRTSSYSVLH 93
S+L + +R+L DD E CL+ SV+H
Sbjct: 102 SRLESSVEFRWRTLDDDEECCLSSAWYEVLSVIH 135
>06_03_1333 - 29410014-29410052,29410071-29410322,29410601-29410633,
29411035-29411045,29411420-29415325,29415437-29415920
Length = 1574
Score = 25.8 bits (54), Expect = 9.2
Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 5/40 (12%)
Query: 45 CCLDPGKRDMLEIVLSKLSTEKSILFRSLTDDYELCLTKC 84
C L GK D L+ +L ++F +LT+ EL LTKC
Sbjct: 1049 CLLVKGKDDNLDSAFWRL-----LVFSNLTELKELTLTKC 1083
>05_06_0267 -
26784861-26784896,26785324-26785404,26785530-26785702,
26785780-26785938,26786199-26786328,26786447-26786609,
26787027-26787109,26787605-26787664,26787819-26787940,
26789126-26789275,26789354-26789546,26790156-26790393,
26791240-26791320,26791403-26791647
Length = 637
Score = 25.8 bits (54), Expect = 9.2
Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Query: 46 CLDPGKRDMLEIVLSKLSTEKSILFRS-LTDDYELCL 81
C DP DM+ + L ++ I RS + D+Y +CL
Sbjct: 230 CWDPKNYDMVPTCIVSLEEKRRIGGRSFINDEYVVCL 266
>02_01_0520 + 3761051-3761107,3761420-3761822,3761960-3762129
Length = 209
Score = 25.8 bits (54), Expect = 9.2
Identities = 11/22 (50%), Positives = 15/22 (68%)
Query: 80 CLTKCRTSSYSVLHENSYKDPT 101
CL SSYSV+H+ S+ DP+
Sbjct: 187 CLQVHMHSSYSVVHQCSHADPS 208
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.135 0.434
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,649,868
Number of Sequences: 37544
Number of extensions: 119590
Number of successful extensions: 166
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 161
Number of HSP's gapped (non-prelim): 9
length of query: 119
length of database: 14,793,348
effective HSP length: 73
effective length of query: 46
effective length of database: 12,052,636
effective search space: 554421256
effective search space used: 554421256
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 54 (25.8 bits)
- SilkBase 1999-2023 -