GeneModel BLAST Result against human

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA005446-TA|BGIBMGA005446-PA|IPR008197|Whey acidic
protein, core region, IPR001450|4Fe-4S ferredoxin, iron-sulfur binding
         (119 letters)

Database: human 
           224,733 sequences; 73,234,838 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC019843-1|AAH19843.1|  205|Homo sapiens chromosome 12 open read...   119   2e-27
AK025068-1|BAB15058.1|  205|Homo sapiens protein ( Homo sapiens ...   119   2e-27
AK222983-1|BAD96703.1|  205|Homo sapiens hypothetical protein FL...   118   6e-27

>BC019843-1|AAH19843.1|  205|Homo sapiens chromosome 12 open reading
           frame 49 protein.
          Length = 205

 Score =  119 bits (287), Expect = 2e-27
 Identities = 52/111 (46%), Positives = 71/111 (63%)

Query: 1   GYVCQRKDVTKNGCCDPEADFTERYXXXXXXXXXXXVEYEHCVSCCLDPGKRDMLEIVLS 60
           GYVC+RKD+  NGCC+     T++Y             YE+CVSCCL P K+ +LE  L+
Sbjct: 90  GYVCERKDLLVNGCCNVNVPSTKQYCCDGCWPNGCCSAYEYCVSCCLQPNKQLLLERFLN 149

Query: 61  KLSTEKSILFRSLTDDYELCLTKCRTSSYSVLHENSYKDPTHKHCFGDEPP 111
           + +     LF ++ D +ELCL KCRTSS SV HEN+Y+DP  K+C+G+ PP
Sbjct: 150 RAAVAFQNLFMAVEDHFELCLAKCRTSSQSVQHENTYRDPIAKYCYGESPP 200


>AK025068-1|BAB15058.1|  205|Homo sapiens protein ( Homo sapiens
           cDNA: FLJ21415 fis, clone COL04030. ).
          Length = 205

 Score =  119 bits (287), Expect = 2e-27
 Identities = 52/111 (46%), Positives = 71/111 (63%)

Query: 1   GYVCQRKDVTKNGCCDPEADFTERYXXXXXXXXXXXVEYEHCVSCCLDPGKRDMLEIVLS 60
           GYVC+RKD+  NGCC+     T++Y             YE+CVSCCL P K+ +LE  L+
Sbjct: 90  GYVCERKDLLVNGCCNVNVPSTKQYCCDGCWPNGCCSAYEYCVSCCLQPNKQLLLERFLN 149

Query: 61  KLSTEKSILFRSLTDDYELCLTKCRTSSYSVLHENSYKDPTHKHCFGDEPP 111
           + +     LF ++ D +ELCL KCRTSS SV HEN+Y+DP  K+C+G+ PP
Sbjct: 150 RAAVAFQNLFMAVEDHFELCLAKCRTSSQSVQHENTYRDPIAKYCYGESPP 200


>AK222983-1|BAD96703.1|  205|Homo sapiens hypothetical protein
           FLJ21415 variant protein.
          Length = 205

 Score =  118 bits (283), Expect = 6e-27
 Identities = 52/111 (46%), Positives = 70/111 (63%)

Query: 1   GYVCQRKDVTKNGCCDPEADFTERYXXXXXXXXXXXVEYEHCVSCCLDPGKRDMLEIVLS 60
           GYVC+RKD+  NGCC+     T++Y             YE+CVSCCL P K+  LE  L+
Sbjct: 90  GYVCERKDLLVNGCCNVNVPSTKQYCCDGCWPNGCCSAYEYCVSCCLQPNKQLPLERFLN 149

Query: 61  KLSTEKSILFRSLTDDYELCLTKCRTSSYSVLHENSYKDPTHKHCFGDEPP 111
           + +     LF ++ D +ELCL KCRTSS SV HEN+Y+DP  K+C+G+ PP
Sbjct: 150 RAAVAFQNLFMAVEDHFELCLAKCRTSSQSVQHENTYRDPIAKYCYGESPP 200


  Database: human
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 73,234,838
  Number of sequences in database:  224,733
  
Lambda     K      H
   0.318    0.135    0.434 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,760,456
Number of Sequences: 224733
Number of extensions: 616617
Number of successful extensions: 939
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 933
Number of HSP's gapped (non-prelim): 3
length of query: 119
length of database: 73,234,838
effective HSP length: 81
effective length of query: 38
effective length of database: 55,031,465
effective search space: 2091195670
effective search space used: 2091195670
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 59 (27.9 bits)