GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA005446-TA|BGIBMGA005446-PA|IPR008197|Whey acidic
protein, core region, IPR001450|4Fe-4S ferredoxin, iron-sulfur binding
         (119 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82059-5|CAB04879.2|  408|Caenorhabditis elegans Hypothetical pr...    29   0.66 
Z46381-3|CAA86516.1|  354|Caenorhabditis elegans Hypothetical pr...    28   2.0  
Z70311-3|CAA94372.1|  546|Caenorhabditis elegans Hypothetical pr...    27   4.6  
Z69385-8|CAA93423.1|  529|Caenorhabditis elegans Hypothetical pr...    27   4.6  
AF077541-12|AAY55886.1|  207|Caenorhabditis elegans Hypothetical...    26   8.1  

>Z82059-5|CAB04879.2|  408|Caenorhabditis elegans Hypothetical
           protein T27E9.9 protein.
          Length = 408

 Score = 29.5 bits (63), Expect = 0.66
 Identities = 20/58 (34%), Positives = 28/58 (48%), Gaps = 9/58 (15%)

Query: 54  MLEIVLSKLSTEKSILFRSLTDDYELCLTKC--RTSSYSVLHENSYKDPTHKHCFGDE 109
           ++ +V+S L +    L RSL DD   C+  C  R  + SV H       T K C GD+
Sbjct: 3   LIILVISILISNAGSLLRSLEDDSNECMFNCPKRARNVSVPH-------TEKTCMGDD 53


>Z46381-3|CAA86516.1|  354|Caenorhabditis elegans Hypothetical
           protein M01F1.3 protein.
          Length = 354

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 2/49 (4%)

Query: 58  VLSKLSTEKSILFR--SLTDDYELCLTKCRTSSYSVLHENSYKDPTHKH 104
           V  KL T+ SI+       D+ + CL   R S+  V+    Y  PT +H
Sbjct: 253 VSPKLITKTSIMLGLGEAEDEIKQCLADLRASNVDVVTFGQYMQPTKRH 301


>Z70311-3|CAA94372.1|  546|Caenorhabditis elegans Hypothetical
           protein T25B9.4 protein.
          Length = 546

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 9/18 (50%), Positives = 14/18 (77%)

Query: 47  LDPGKRDMLEIVLSKLST 64
           LDP KRD +++++ KL T
Sbjct: 371 LDPAKRDTMKVIVKKLET 388


>Z69385-8|CAA93423.1|  529|Caenorhabditis elegans Hypothetical
           protein ZK593.9 protein.
          Length = 529

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 9/18 (50%), Positives = 14/18 (77%)

Query: 47  LDPGKRDMLEIVLSKLST 64
           LDP KRD +++++ KL T
Sbjct: 354 LDPAKRDTMKVIVKKLET 371


>AF077541-12|AAY55886.1|  207|Caenorhabditis elegans Hypothetical
          protein Y23H5A.8 protein.
          Length = 207

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 13/57 (22%), Positives = 26/57 (45%), Gaps = 5/57 (8%)

Query: 47 LDPGKRDMLEIVLSKLSTEKSILFRSLTD-----DYELCLTKCRTSSYSVLHENSYK 98
          +DP K+ M E+++ K+  + S L  ++       D  +    C  S   ++ E  Y+
Sbjct: 1  MDPDKKKMFEVIIKKIQQQSSALEEAMKAQKPKVDCSMSREMCSPSGLIIIMERIYE 57


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.318    0.135    0.434 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,255,673
Number of Sequences: 27539
Number of extensions: 116002
Number of successful extensions: 223
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 221
Number of HSP's gapped (non-prelim): 5
length of query: 119
length of database: 12,573,161
effective HSP length: 73
effective length of query: 46
effective length of database: 10,562,814
effective search space: 485889444
effective search space used: 485889444
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 54 (25.8 bits)