GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA005446-TA|BGIBMGA005446-PA|IPR008197|Whey acidic
protein, core region, IPR001450|4Fe-4S ferredoxin, iron-sulfur binding
         (119 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase doma...    21   3.8  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    20   6.7  
AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly pro...    20   6.7  
AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.          20   8.8  

>DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase
          domain protein protein.
          Length = 448

 Score = 21.0 bits (42), Expect = 3.8
 Identities = 9/36 (25%), Positives = 16/36 (44%)

Query: 57 IVLSKLSTEKSILFRSLTDDYELCLTKCRTSSYSVL 92
          I+   L   K + +  + D Y+ C+T C   +   L
Sbjct: 32 IIDKSLKGWKEVEYEVVRDAYDNCITVCNMENVDPL 67


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 20.2 bits (40), Expect = 6.7
 Identities = 6/17 (35%), Positives = 11/17 (64%)

Query: 66  KSILFRSLTDDYELCLT 82
           K +LF  + D + +C+T
Sbjct: 305 KFVLFTMILDTFSICVT 321


>AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly
           protein MRJP6 protein.
          Length = 437

 Score = 20.2 bits (40), Expect = 6.7
 Identities = 7/21 (33%), Positives = 12/21 (57%)

Query: 82  TKCRTSSYSVLHENSYKDPTH 102
           T+C  S+    ++N YK+  H
Sbjct: 415 TRCAKSNNQNNNQNKYKNQAH 435


>AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.
          Length = 147

 Score = 19.8 bits (39), Expect = 8.8
 Identities = 7/11 (63%), Positives = 7/11 (63%)

Query: 107 GDEPPGSHSGN 117
           GD P  SHS N
Sbjct: 72  GDSPVSSHSSN 82


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.318    0.135    0.434 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 36,985
Number of Sequences: 429
Number of extensions: 1373
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of query: 119
length of database: 140,377
effective HSP length: 51
effective length of query: 68
effective length of database: 118,498
effective search space:  8057864
effective search space used:  8057864
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)
S2: 39 (19.8 bits)