GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA005445-TA|BGIBMGA005445-PA|undefined
         (1150 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    24   6.2  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    24   8.2  

>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 24.2 bits (50), Expect = 6.2
 Identities = 12/26 (46%), Positives = 16/26 (61%)

Query: 243 PNLAVYNGFKYPPKPNLPELDLVSER 268
           PNLAVY  +     PNLP+L L + +
Sbjct: 584 PNLAVYGVWINCLDPNLPKLALFATK 609


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 23.8 bits (49), Expect = 8.2
 Identities = 10/26 (38%), Positives = 14/26 (53%)

Query: 181 NLFEDNPFGFACTVCDRLWFKNDLKS 206
           N+  D+P G +C V DR  F   + S
Sbjct: 303 NIIADDPEGVSCLVIDRETFNQLISS 328


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.319    0.135    0.400 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 326,662
Number of Sequences: 429
Number of extensions: 15245
Number of successful extensions: 37
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 35
Number of HSP's gapped (non-prelim): 2
length of query: 1150
length of database: 140,377
effective HSP length: 65
effective length of query: 1085
effective length of database: 112,492
effective search space: 122053820
effective search space used: 122053820
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 49 (23.8 bits)