GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA005444-TA|BGIBMGA005444-PA|IPR009100|Acyl-CoA
dehydrogenase/oxidase, middle and N-terminal, IPR009075|Acyl-CoA
dehydrogenase/oxidase C-terminal, IPR006092|Acyl-CoA dehydrogenase,
N-terminal, IPR006091|Acyl-CoA dehydrogenase/oxidase, central region,
IPR006090|Acyl-CoA dehydrogenase, type 1
         (410 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    25   1.2  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    24   2.7  
L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.        23   3.6  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    23   3.6  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    23   4.7  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    23   6.3  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    22   8.3  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    22   8.3  

>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 25.0 bits (52), Expect = 1.2
 Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 3/38 (7%)

Query: 81  EIYNELGELGALGCTIKGYGCAGVSYVTYGLITRELDG 118
           +I+  +G L  +G  I     A ++Y  Y  I R LDG
Sbjct: 121 QIFAVIGSLTGIGAAITN---AAIAYDRYSTIARPLDG 155


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
          protein.
          Length = 1370

 Score = 23.8 bits (49), Expect = 2.7
 Identities = 13/52 (25%), Positives = 24/52 (46%)

Query: 4  LTSKYILSTICKSNSIRALSTTYSRNAKVTFDWVDPFNLDGQLHDDEKAVRD 55
          +T+KY+ +T+  +  +   ST  S +A  +  W+     D +  D    V D
Sbjct: 1  MTAKYVFTTLINAAFLCLASTILSESAGTSCKWLSEGGNDTRSADCTLRVLD 52


>L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.
          Length = 382

 Score = 23.4 bits (48), Expect = 3.6
 Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 6/49 (12%)

Query: 261 EENLLPNVVGLKGPFGCLNNARYGIAWGALGSAETCLRIARQYTLDRKQ 309
           E+ LLP+V  L+  +   +  R G+  G +  A   LRIARQ T  RK+
Sbjct: 251 EDVLLPSVY-LR--WNLTSGERVGLVGGRVKEA---LRIARQMTTSRKK 293


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 23.4 bits (48), Expect = 3.6
 Identities = 11/22 (50%), Positives = 14/22 (63%)

Query: 389 KDLEAPGIDPGTSRMLSERSTI 410
           +DL  PG D  TSR  ++RS I
Sbjct: 7   RDLSKPGCDEQTSRGDNDRSRI 28


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 23.0 bits (47), Expect = 4.7
 Identities = 11/27 (40%), Positives = 18/27 (66%), Gaps = 1/27 (3%)

Query: 132 SLAMGSIYMYGTEDQKQKYLPRMATGE 158
           S+  GS + +  E++KQ YL + ATG+
Sbjct: 166 SVFWGSAWQWN-EERKQYYLHQFATGQ 191


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic
          acetylcholine receptor beta1subunit protein.
          Length = 520

 Score = 22.6 bits (46), Expect = 6.3
 Identities = 10/20 (50%), Positives = 14/20 (70%), Gaps = 1/20 (5%)

Query: 48 DDEKAVRDSFRAYCNEKLLP 67
          D+E+ VRD FR Y N+ + P
Sbjct: 26 DEERLVRDLFRGY-NKLIRP 44


>AF388659-3|AAK71993.1|  548|Apis mellifera
          1D-myo-inositol-trisphosphate 3-kinaseisoform C
          protein.
          Length = 548

 Score = 22.2 bits (45), Expect = 8.3
 Identities = 18/77 (23%), Positives = 33/77 (42%), Gaps = 3/77 (3%)

Query: 3  SLTSKYILSTICKSNSIRALSTTYSRNAKVTFDWVDPFNLDGQLHDDEKAVRDSFRAYCN 62
          SL+ + I+ +  +  S R  S+   R +  +     P  L  Q H D    +     +CN
Sbjct: 10 SLSQRKIIRSRSRRYSKRFSSSIVDRRSPSSSRSPSPSLLTSQPHQDHNKEKSKNNHHCN 69

Query: 63 ---EKLLPRVVEANRNE 76
             EKL    +E++ ++
Sbjct: 70 QDTEKLNQLEIESDNSK 86


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 22.2 bits (45), Expect = 8.3
 Identities = 12/35 (34%), Positives = 19/35 (54%)

Query: 244 LRASATGMILLDEVVIPEENLLPNVVGLKGPFGCL 278
           L+  +TG+ L   V +    ++  +VGLK P  CL
Sbjct: 506 LKDRSTGLHLQIRVGVHSGAVVAGIVGLKMPRYCL 540


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.318    0.135    0.395 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 113,103
Number of Sequences: 429
Number of extensions: 4798
Number of successful extensions: 13
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 8
Number of HSP's gapped (non-prelim): 8
length of query: 410
length of database: 140,377
effective HSP length: 59
effective length of query: 351
effective length of database: 115,066
effective search space: 40388166
effective search space used: 40388166
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 45 (22.2 bits)