GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA005443-TA|BGIBMGA005443-PA|IPR002213|UDP-
glucuronosyl/UDP-glucosyltransferase
         (486 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit Srb9...    34   0.039
SPAC823.12 |||zinc finger protein Pep5/Vps11 |Schizosaccharomyce...    33   0.068
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces...    29   1.9  
SPAC13G7.11 |||mitochondrial inner membrane protein|Schizosaccha...    28   3.4  
SPBC11C11.04c |alp1||tubulin specific chaperone cofactor D |Schi...    27   5.9  
SPAC26H5.02c |||DNA replication ATPase|Schizosaccharomyces pombe...    27   5.9  
SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr...    27   7.8  

>SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit
            Srb9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1223

 Score = 34.3 bits (75), Expect = 0.039
 Identities = 25/86 (29%), Positives = 41/86 (47%), Gaps = 6/86 (6%)

Query: 189  YIPNLEEPVPTLLEMQKNASLILINGHFSFDTPAAYLPNIIEIGGVHLSKSDTKLPADLQ 248
            +I  +  PVP   +  K  S IL  G+ + D   +YLP +     +HL  S    P  + 
Sbjct: 1119 FIREMAMPVPN--DEFKKISTILARGYLALDEDESYLPLL----SIHLLISRNHDPYLML 1172

Query: 249  NILDEAKHGVIYINFGSNVRSAELPL 274
            N++ +    +IY+ F + V  + LPL
Sbjct: 1173 NLILKHYLSMIYLQFRTYVSFSSLPL 1198


>SPAC823.12 |||zinc finger protein Pep5/Vps11 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 906

 Score = 33.5 bits (73), Expect = 0.068
 Identities = 31/98 (31%), Positives = 53/98 (54%), Gaps = 8/98 (8%)

Query: 178 YLEEQEKLVKKYIPNLEEPVPTLLEMQKNASLILINGHFSFDTPAAYLPNIIEIGGVHLS 237
           +L+ QE  +K+ I  LEE + T L    +  L+L       D+P+  +  +I+IG +   
Sbjct: 429 FLKAQE--IKQLIRLLEELIKTGLATSDHRLLLLSCYVEIHDSPS--IRKLIDIGEIDFD 484

Query: 238 KSDTKLPADLQNILDEAKHGVIYINFGSNVRSAELPLE 275
           ++  K+  D  N+LDEAKH  + I F +N R  ++ +E
Sbjct: 485 QA-FKICYD-SNLLDEAKH--LAIRFNNNERVLDVLVE 518


>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3131

 Score = 28.7 bits (61), Expect = 1.9
 Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 1/43 (2%)

Query: 186  VKKYIPNLEEPVPTLLEMQKNASLILINGHFSFDTPAAYLPNI 228
            +  YI N    +P  LE   +A + ++ G FS  TP ++LPN+
Sbjct: 1121 INLYISNPIFQIPLTLENGSSAMVEILPGSFSLKTP-SWLPNL 1162


>SPAC13G7.11 |||mitochondrial inner membrane
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 269

 Score = 27.9 bits (59), Expect = 3.4
 Identities = 12/56 (21%), Positives = 33/56 (58%), Gaps = 2/56 (3%)

Query: 148 FLEVRNPTSFFAR-LRNVYFTVYEYVWWRYWYLEEQEKLVKKYIPNLEEPVPTLLE 202
           ++E  + TSFF    + + F  + Y+++ +W L++ + L+K+  P+ +  +  +++
Sbjct: 57  YIEPIDNTSFFLHPFKKIRFW-WRYLFYGWWNLKKNQFLIKRTFPDRDFSIAEIIQ 111


>SPBC11C11.04c |alp1||tubulin specific chaperone cofactor D
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1107

 Score = 27.1 bits (57), Expect = 5.9
 Identities = 32/169 (18%), Positives = 74/169 (43%), Gaps = 6/169 (3%)

Query: 140 QLATVISEFLEVRNPTSFFARLRNVYFTVYEYVWWRYWYLEEQEKLVKKYIPNLEEPVPT 199
           +L+ ++ + L+ R+ +    +L++V     ++  ++   L+   KL+ KY+PNL   +  
Sbjct: 21  RLSQILDDVLDDRSSSHSVEKLKDVAVKYLQFCQFQPTLLD---KLLSKYVPNLASYLLK 77

Query: 200 LLEMQKNASLILINGHFSFDTPAAYLPNIIEIGGVHLSKSDTKLPADLQNILDEAKHGVI 259
           +  + K  S+ +I   F        +  +  +G  ++ +  T L     N      H ++
Sbjct: 78  VKNIGKCNSITVILYQFCKIRGYKAVRVLFPVGVQYIKELYTLLNESSNNTWH--FHYIV 135

Query: 260 YINFGSNVRSAELPLEKRNVFLNVIKKLKQTVVWKWEDDSLDKMDNLVV 308
            + + S   +   PL   +  L+V K +    +   E+  +DK  + +V
Sbjct: 136 LL-WLSQALNTPFPLNSLDDSLDVKKTIYTIAIKYLENSGIDKEASCLV 183


>SPAC26H5.02c |||DNA replication ATPase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 504

 Score = 27.1 bits (57), Expect = 5.9
 Identities = 15/44 (34%), Positives = 26/44 (59%), Gaps = 3/44 (6%)

Query: 270 AELPLEKRNVFLNVIKKLKQTVVWKWEDDSLDKMDNLVVRKWLP 313
           AE+P+  RN   N++K+L     +K+     D  D LV++++LP
Sbjct: 435 AEIPMHIRNAPTNLMKQLGYHKGYKYNP---DYKDGLVMQEYLP 475


>SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1471

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 13/29 (44%), Positives = 18/29 (62%)

Query: 446  LDVYGFILAVVLTIFYTIYKLSSFILHKL 474
            LD Y   L  VL  F T++K+ SF++H L
Sbjct: 1167 LDFYEKPLQAVLYWFATLHKIRSFLVHLL 1195


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.323    0.140    0.422 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,382,257
Number of Sequences: 5004
Number of extensions: 108110
Number of successful extensions: 315
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 312
Number of HSP's gapped (non-prelim): 9
length of query: 486
length of database: 2,362,478
effective HSP length: 75
effective length of query: 411
effective length of database: 1,987,178
effective search space: 816730158
effective search space used: 816730158
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 56 (26.6 bits)