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Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA005441-TA|BGIBMGA005441-PA|undefined
         (818 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC825.05c |||splicing coactivator SRRM1 |Schizosaccharomyces p...    35   0.039
SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40 |Schi...    32   0.37 
SPCC338.07c |||NatA N-acetyltransferase complex subunit |Schizos...    31   0.64 
SPAC1006.08 |etd1||ethanol-hypersensitive mutant protein |Schizo...    31   0.85 
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar...    31   0.85 
SPAC3A12.13c |||translation initiation factor eIF3 complex subun...    30   1.1  
SPAC6G9.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ...    30   1.5  
SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor eIF...    29   2.6  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    29   2.6  
SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|...    29   2.6  
SPBC28F2.09 |||transcription factor TFIIA complex large subunit ...    29   3.4  
SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    29   3.4  
SPAC57A10.10c |sla1||La protein homolog|Schizosaccharomyces pomb...    29   3.4  
SPCC285.13c |||nucleoporin Nup60 |Schizosaccharomyces pombe|chr ...    29   3.4  
SPAC56F8.16 |esc1||transcription factor Esc1 |Schizosaccharomyce...    28   4.5  
SPBC660.08 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    28   4.5  
SPAC1142.04 |||Noc2p-Noc3p complex subunit Noc2 family |Schizosa...    28   6.0  
SPBC9B6.10 |cdc37||Hsp90 co-chaperone Cdc37|Schizosaccharomyces ...    28   6.0  
SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces ...    28   6.0  
SPBC19C2.01 |cdc28|prp8|ATP-dependent RNA helicase Cdc28 |Schizo...    27   7.9  

>SPCC825.05c |||splicing coactivator SRRM1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 301

 Score = 35.1 bits (77), Expect = 0.039
 Identities = 37/157 (23%), Positives = 59/157 (37%), Gaps = 10/157 (6%)

Query: 100 VLRKTKSSTPSDERPQANRTTGYFKGVADWSQRRATKXXXXXXXXXXXXXXXXXXXYASN 159
           +L K +  +   +R +A++     K V D S RR ++                       
Sbjct: 135 ILEKKEEISKLKDRTEASKEES--KTVTDHSNRRESRRESTYYDSRERNGKRTSRSTLDR 192

Query: 160 DRLNGSSP--RHVYGKRDSPQGRSS--PIGRRHPPSRDDSAYVSSSTMHSPPRGSPFRPL 215
            R + +S   R+ YG+  SP  R S  P G R+    D  +Y  S       R  P R  
Sbjct: 193 KRFHDASDTERNRYGRSPSPHSRFSEKPRGERY----DIRSYSRSHKERYEDRYRPTRRR 248

Query: 216 ETDRSFREPSVEEDYRPIAPERKRQPKLRVSEEHRYD 252
           E     R+    +++      R R+ +    E+HRYD
Sbjct: 249 ERHYRTRDDEGFDEFGRSRDGRWRESRTSYREKHRYD 285


>SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 451

 Score = 31.9 bits (69), Expect = 0.37
 Identities = 43/187 (22%), Positives = 70/187 (37%), Gaps = 6/187 (3%)

Query: 627 DKKKIFLKGLKERAPELYQTLHADEESDGSRLSSRYGTPSPHYKERLSEERITKTPLYKT 686
           D +KI  KG    AP   +  H+  E+ GS  SS     S    E  SE+  + +    +
Sbjct: 82  DSQKISKKG----APP--EKAHSSSEASGSGSSSDESDSSSSESESSSEDNDSSSSSSDS 135

Query: 687 ESLNRETSPFVSRLDSRMKSPAIRRGSNSSDNYSETYRYTTRSGDPERPSVTDTVEIVSK 746
           ES +       S   S  +S +   GS+SS + S +   ++   +    S +D+    S 
Sbjct: 136 ESESSSEDSDSSSSSSDSESESSSEGSDSSSSSSSSESESSSEDNDSSSSSSDSESESSS 195

Query: 747 KVVPSRDGRSKEIIESREINSVTKSRGFKQEPLPSVKHVENGKRSNFGFEKHGPYTERKS 806
           +   S    S    ES    S + S     E   S +  ++   S+    +        S
Sbjct: 196 EDSDSSSSSSDSESESSSEGSDSSSSSSSSESESSSEDNDSSSSSSDSESESSSEDSDSS 255

Query: 807 STYKVSE 813
           S+   SE
Sbjct: 256 SSSSDSE 262


>SPCC338.07c |||NatA N-acetyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 729

 Score = 31.1 bits (67), Expect = 0.64
 Identities = 24/98 (24%), Positives = 43/98 (43%), Gaps = 2/98 (2%)

Query: 600 LFGARYGKTVPHTNGHTNGYSKSFDDTDKKKIFLKGLKERAPELYQTLHADEESDGSRLS 659
           LF   + K  P         S   ++ ++KKI+ K LK+   +  +     +E+D SR  
Sbjct: 576 LFDLPFAKYSPKLPDFEKLSSGEINEEEEKKIYKK-LKKDLSKRLERAEKLKEADKSRAK 634

Query: 660 SRYGTPSPHYKERLSEERI-TKTPLYKTESLNRETSPF 696
           S  G P  + ++ L E  + T  PL + +    +  P+
Sbjct: 635 SEDGMPVKYDEDPLGENLVATSEPLKEAQKCLEKLLPY 672


>SPAC1006.08 |etd1||ethanol-hypersensitive mutant protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 391

 Score = 30.7 bits (66), Expect = 0.85
 Identities = 32/116 (27%), Positives = 46/116 (39%), Gaps = 6/116 (5%)

Query: 588 AVSRETERRRDGLFGARYGKTVPHTNGHTNGYSKSFDDTDKKKIFLKGLKERAPELYQTL 647
           A+S E      G   +  G  +P  NG   G     ++TD  +I     + +   L  T 
Sbjct: 142 ALSNEFNSANKGSKASGVGAELPSVNGFIEGELHDDNETDSFRINELAKQIQETSLGATT 201

Query: 648 HADEESDGSRLSSRYGTPSPHYKERLSEERITKTPLYKTESLNRETSP--FVSRLD 701
             DE SDG        T SP    ++SE  I      +T  +N ++S   F SR D
Sbjct: 202 QEDESSDGI-CWDELSTTSPE-SSKVSEPIIQDNT--QTTHINNDSSDIRFSSRCD 253


>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1131

 Score = 30.7 bits (66), Expect = 0.85
 Identities = 37/120 (30%), Positives = 48/120 (40%), Gaps = 9/120 (7%)

Query: 653 SDGSRLSSRYGTPSPHYKERLSEERITKTPLYKTESLNRETSPF-VSRLDSRMKSPAIRR 711
           S  S  SS     + +     S    + T    + SL+  TS    S + S   S  +  
Sbjct: 533 SSNSLSSSTSSVSTSYIPNASSSVYASSTEALSSNSLSSSTSSASTSYIPSASSSYEV-- 590

Query: 712 GSNSSDNYSETYRYTTRSGDPERPSVTDTVEIVSKKVVPSRDGRSKEIIESREINSVTKS 771
            SNSSD YS+T    T SG     + + T EIVS     S  G S     S  +NSV  S
Sbjct: 591 ASNSSDYYSQTVSSITASG-----TTSSTSEIVSTPASNSNTG-SLNGTSSFNVNSVGPS 644


>SPAC3A12.13c |||translation initiation factor eIF3 complex
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 274

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 23/86 (26%), Positives = 40/86 (46%), Gaps = 7/86 (8%)

Query: 388 YLGEDPFAPSIY----GREHKYEGSSKRTAGHDAREHRDRGQFSSTLGRFSHSTSRLNPN 443
           +L EDP  P+ +    G++   + SSK     D  E  D  +   +L   SHS S+ + +
Sbjct: 7   FLVEDPAKPAEFDFPLGKDS--QSSSKPKKRFDDEEDEDEEENKESLQNDSHSVSQKSSS 64

Query: 444 SETEEDYKRSVQTLPRKLHDRK-EKA 468
           S   +     +  + +K+ +R  EKA
Sbjct: 65  SSQNDQGSNKMTRIQQKIQERNFEKA 90


>SPAC6G9.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 681

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 23/80 (28%), Positives = 40/80 (50%), Gaps = 6/80 (7%)

Query: 742 EIVSKKVVPS--RDGRSKEIIESREINSVTKSRGFKQE---PL-PSVKHVENGKRSNFGF 795
           E++ +K +P   RD  +  +I++   N+  K R    E   PL PS+K+   G+R     
Sbjct: 596 ELMDEKHLPKLLRDSFANYVIQTALDNASVKQRAELVERIKPLIPSIKNTPCGRRILSKL 655

Query: 796 EKHGPYTERKSSTYKVSEKL 815
           E+  P ++ K   Y  SE++
Sbjct: 656 ERRHPSSKEKPIVYSNSERV 675


>SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor
           eIF3c|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 918

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 18/72 (25%), Positives = 30/72 (41%)

Query: 406 EGSSKRTAGHDAREHRDRGQFSSTLGRFSHSTSRLNPNSETEEDYKRSVQTLPRKLHDRK 465
           E  S+ +   +  E  +  + S      S S S     SE+EE+   S ++ P     + 
Sbjct: 82  ESDSESSEEEEETESEEDSEVSDESESESESESESEEESESEEESDESERSGPSSFLKKP 141

Query: 466 EKATEKPSSNKY 477
           EK   KP+  K+
Sbjct: 142 EKEEAKPAGLKF 153


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
            Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 27/106 (25%), Positives = 46/106 (43%), Gaps = 3/106 (2%)

Query: 622  SFDDTDKKKIFLKGLKERAPELYQTLHADEESDGSRLSSRYGTPSPHYKERLSEERITKT 681
            S  +++ + I L G+   AP L +   A+ E  G   +      +        E  +T T
Sbjct: 2025 SLTNSEVRDIIL-GMTITAPSLQRQQIAEIEKQGRENAQVTAVTTKTTNVHGDEMVVTTT 2083

Query: 682  PLYKTESLNRETSPFVSRLDSRMKSPAIRRGSN-SSDNYSETYRYT 726
              Y+ E  + +T  + +R  S +  P   +    +SDN SET+ YT
Sbjct: 2084 SAYENEKFSSKTE-WRNRAISSISLPLRTKNIYVNSDNISETFPYT 2128


>SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 534

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 26/96 (27%), Positives = 40/96 (41%), Gaps = 5/96 (5%)

Query: 667 PHYKERLSEERITKT-PLYKTES-LNRETSPFVSRLDSRMKSPAIRRGSNSSDNYSETYR 724
           P Y   +S  R   T  L + ES +N++  P +     R +    R  SNS  N+S    
Sbjct: 217 PLYLHIVSHNRKDLTVALQEIESWINKDMGPLIDERRFRRREDNERNNSNSPRNFSTHGN 276

Query: 725 YTTRSGDPERPSVTDTVEIVSKKVVPSRDGRSKEII 760
               +G P R  + + V I    + PSR    ++ I
Sbjct: 277 GNGENGQPRRKWLEEKVYI---NLTPSRGFHLRQAI 309


>SPBC28F2.09 |||transcription factor TFIIA complex large subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 369

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 29/161 (18%), Positives = 64/161 (39%), Gaps = 5/161 (3%)

Query: 659 SSRYGTPSPHYKERLSEERITKTPLYKTESLNRETSPFVSRLDSRMKSPAIRRGSNSSDN 718
           S+ Y  P+P   +  +      + +   +S    T+PF S   + ++ P  +   +   N
Sbjct: 116 SNYYSPPTPSLPQSATNISFDSSAIPNVQSNPNNTAPFPSYSSNSLQLPTNQTADSPIIN 175

Query: 719 YSETYRYTTRSGDPERPSVTDTVEIVSKKVVPSRDGRSKEIIESREINSVTKSRGFKQEP 778
              T   T+ +G    P  + T       ++P+++   K  +   E ++ T +      P
Sbjct: 176 DHSTANVTS-TGQEHAPDSSST-NSFGGLLLPNQNSPKKSELGETESSNTTPANSRNDVP 233

Query: 779 LP--SVKHVEN-GKRSNFGFEKHGPYTERKSSTYKVSEKLR 816
               ++  +++ G  SNF   +     +  +  Y+V +K R
Sbjct: 234 QTDGAIHDLDDAGSPSNFESNRFAIAQKADAEIYEVLKKNR 274


>SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 636

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 18/68 (26%), Positives = 27/68 (39%)

Query: 175 DSPQGRSSPIGRRHPPSRDDSAYVSSSTMHSPPRGSPFRPLETDRSFREPSVEEDYRPIA 234
           D  + R S +G  + P    S    SS     P G P  P+ T + +   S   +Y   +
Sbjct: 58  DYMRSRMSTLGSANQPMAPPSLRNRSSVYLPTPAGPPQIPVNTGKRYTLTSSSANYMTKS 117

Query: 235 PERKRQPK 242
             + R PK
Sbjct: 118 ERQMRPPK 125


>SPAC57A10.10c |sla1||La protein homolog|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 298

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 25/106 (23%), Positives = 40/106 (37%), Gaps = 8/106 (7%)

Query: 19  QDHDKDYKRPVDFDIEE--------ETRKKETSKWLESHFGSDSRSSHDSIAEEIGRPPE 70
           +D DK +K  V  + +E        E  K    KW E      S+  +  +  E+ +   
Sbjct: 190 RDDDKKFKGSVFVEFKEPDVANKFLEKVKTAPLKWGEDELTIMSKKEYVDMKAELHKNDP 249

Query: 71  PFFKKKTIEDEGYFGKSSTGPPPPVYGDRVLRKTKSSTPSDERPQA 116
           P F  K    + +       P       R  +K +SS  S+E+P A
Sbjct: 250 PKFSSKRRRFDAFKEMDRQRPGKYSNRGRKFKKQRSSNASEEKPSA 295


>SPCC285.13c |||nucleoporin Nup60 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 736

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 62/272 (22%), Positives = 105/272 (38%), Gaps = 36/272 (13%)

Query: 560 SKLDETP-EQLKSPGIVSIINRSQRDLADAVSR-------ETER------RRDGLFGARY 605
           SK  +TP  +++  GI+SI+N+S    +  +S        +T R      R  G+     
Sbjct: 135 SKKGKTPLNEIEKEGIISILNKSASPSSSVISPAASLNRFQTPRAAAISKRESGVSSEPR 194

Query: 606 GKTVPHTNGHTNGYSKSFDDTDKKKIFLKGLKERAPELYQTLHADEESDGSRLSSRYGTP 665
            +T   T G+T   +K +      +     L+E+  +   T+  +      RLS    T 
Sbjct: 195 ARTSSLTPGNTPNSAKQW---SAFRSTFSPLREQ--DQLSTISPNSLLPAQRLSYYGPTL 249

Query: 666 SPHYKERLSEERITKTPLYKTESLNRETSPFVSRLDSRMKSPAIRRGSNSSDNYSETYRY 725
           S  Y  RL  +R + TP+    SL+   +P +S        P   R  +++ ++++T   
Sbjct: 250 STPYNRRLRHKRHSTTPI----SLSNSIAPSLS------FQPKKARYESANVSFNDTSFT 299

Query: 726 TTRSGDPERPSVTDTVEIVSKKVVPSRDGRS-KEIIESREIN--SVTKSRGFKQEPLPSV 782
              +  P   S T        +  PSR   S   I++S+E N  S+T   G  Q      
Sbjct: 300 NVPTSSPLHQSTTAN----HPEKTPSRAAASLLSILDSKEKNTPSITAKAGSPQSAPSKA 355

Query: 783 KHVENGKRSNFGFEKHGPYTERKSSTYKVSEK 814
            ++    R      +      R SS     EK
Sbjct: 356 SYISPYARPGITTSRRRHDQIRPSSEKSEPEK 387


>SPAC56F8.16 |esc1||transcription factor Esc1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 413

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 22/98 (22%), Positives = 45/98 (45%), Gaps = 2/98 (2%)

Query: 604 RYGKTVPHTNGHTNGYSKSFDDTDKKKIFLKGLKERAPELYQTLHADEESDGSRLSSRYG 663
           R    VP+   +T  Y+++ +     K+  +  ++   EL+  L      D S  SS++G
Sbjct: 314 RVTSLVPNQPEYTGPYTRNPELRTSHKLAERKRRKEIKELFDDLKDALPLDKSTKSSKWG 373

Query: 664 --TPSPHYKERLSEERITKTPLYKTESLNRETSPFVSR 699
             T +  Y E+L  E++      K+   N +++  V++
Sbjct: 374 LLTRAIQYIEQLKSEQVALEAYVKSLEENMQSNKEVTK 411


>SPBC660.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 395

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 20/70 (28%), Positives = 29/70 (41%), Gaps = 5/70 (7%)

Query: 400 GREHKYEGSSKRTAGHDAREHRDRGQFSSTLGRFSHSTSRLNPNSETEEDYKRSVQTLPR 459
           GR HK E S KR  GH +      G+ + +  R    ++RL   S    D+ + +     
Sbjct: 245 GRSHKREESFKRAFGHASSSESSIGEITDS--REDIQSNRLVNGSWENNDFTKEIN---N 299

Query: 460 KLHDRKEKAT 469
              DR E  T
Sbjct: 300 NFPDRSETPT 309


>SPAC1142.04 |||Noc2p-Noc3p complex subunit Noc2 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 707

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 15/53 (28%), Positives = 29/53 (54%), Gaps = 3/53 (5%)

Query: 603 ARYGKTVPHTNGHTNGYSKSFDDTDKKKIF---LKGLKERAPELYQTLHADEE 652
           +R  K +P+ N   +    S ++ D  + +   L+GLKE+ PE Y+ L  +++
Sbjct: 93  SRKRKNLPNENTQDSTSESSEEEEDGLESYQKQLEGLKEKDPEFYKFLEQNDQ 145


>SPBC9B6.10 |cdc37||Hsp90 co-chaperone Cdc37|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 466

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 28/86 (32%), Positives = 41/86 (47%), Gaps = 11/86 (12%)

Query: 621 KSFDDTDKKKIFLKGLKER-------APELYQTLHADEESDGSRLSSRYGTPSPHYKERL 673
           KS DD+DK    LK  KER       A + Y TL A+ ++  +      G  S + +++ 
Sbjct: 128 KSMDDSDKCLRRLKSHKERLLKLLEDAQKEYDTLEAESKNYITSEDLHLGFDSTYVQKKE 187

Query: 674 SEE-RITKT---PLYKTESLNRETSP 695
            E+ + TKT    +   ESLN  T P
Sbjct: 188 PEKPKKTKTKKETIQVIESLNNPTPP 213


>SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1364

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 32/137 (23%), Positives = 51/137 (37%), Gaps = 10/137 (7%)

Query: 671 ERLSEERITKTPLYKTESLNRETSPFVSRLDSRMKSPAIRRGSNSSD-----NYSETYRY 725
           ER    R+  TPL   +    E  P  S  +   + P   +G   S+       S+T R 
Sbjct: 689 ERSENYRLGATPLTAEKPFTTE-KPLSSLPEEVSRQPTDDKGEQVSNADVDSGLSKTERL 747

Query: 726 TTRSGDPERPSVTDTVEIVSKKVVPSRDGRSKEIIESREINSVTKSRGFKQEP----LPS 781
           T +  +  +   T+T   V     PS +   + I  +   +S +  R   QEP    L  
Sbjct: 748 TIQQTNEIKHVPTNTTSSVKLPQQPSNEDEKERITTADYADSTSLERLESQEPNRNELVQ 807

Query: 782 VKHVENGKRSNFGFEKH 798
           V     G  ++ G  +H
Sbjct: 808 VGSSNAGNTTSVGMNEH 824


>SPBC19C2.01 |cdc28|prp8|ATP-dependent RNA helicase Cdc28
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1055

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 34/145 (23%), Positives = 47/145 (32%), Gaps = 3/145 (2%)

Query: 600 LFGARYGKTVPHTNGHTNGYSKSFDDTDKKKIF-LKGLKERAPELYQTLHADEESDGSRL 658
           L G      V +      G S S +   K   F + G      E   TL+A    +GSR 
Sbjct: 14  LLGMSEPSVVEYLIAEAKGSSSSNNLYQKLVSFGMDGDDPAVKEFAHTLYARIPREGSRP 73

Query: 659 SSRYGTPSPHYKERLSEERITKTPLYKTESLNRETSPFVSRLDSRMKSP--AIRRGSNSS 716
              Y       +  L  ER+  +     E  + ET     +  SR K+P   I R     
Sbjct: 74  KENYNARKKKEQGILQMERLNSSYDLLIEPQSHETPGKPLKKKSRSKTPKREIARRQRDE 133

Query: 717 DNYSETYRYTTRSGDPERPSVTDTV 741
           D +          G    P   D+V
Sbjct: 134 DEWESDEYEEVVDGSASHPIEEDSV 158


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.310    0.128    0.369 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,642,431
Number of Sequences: 5004
Number of extensions: 159003
Number of successful extensions: 485
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 474
Number of HSP's gapped (non-prelim): 27
length of query: 818
length of database: 2,362,478
effective HSP length: 79
effective length of query: 739
effective length of database: 1,967,162
effective search space: 1453732718
effective search space used: 1453732718
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)
S2: 58 (27.5 bits)

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