GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA005433-TA|BGIBMGA005433-PA|undefined
         (515 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    29   0.092
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    24   3.5  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    23   8.0  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    23   8.0  

>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 29.1 bits (62), Expect = 0.092
 Identities = 14/44 (31%), Positives = 24/44 (54%)

Query: 108 VQYLIGIVMIIVSYCVTDWLGIDGEPPSMTILTVSFLLLNFLAA 151
           + Y I  ++I+V   V+ WL +D  PP + + T + L    LA+
Sbjct: 236 MDYYIPSILIVVISWVSFWLHMDASPPRIVLGTNTILTFMTLAS 279


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 23.8 bits (49), Expect = 3.5
 Identities = 10/39 (25%), Positives = 19/39 (48%)

Query: 108 VQYLIGIVMIIVSYCVTDWLGIDGEPPSMTILTVSFLLL 146
           +Q      ++++    + WLG+D  P  + +L  S L L
Sbjct: 204 IQTFAPSTLVVMLSWFSFWLGLDAIPGRVALLVTSMLTL 242


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 22.6 bits (46), Expect = 8.0
 Identities = 11/30 (36%), Positives = 15/30 (50%)

Query: 21  APNEGRSNIKGDELNIAVLLFLYTLQGIPL 50
           APN G   +  +E    + +FLY L   PL
Sbjct: 133 APNNGAVKVLANEFLSILPIFLYALGEQPL 162


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 22.6 bits (46), Expect = 8.0
 Identities = 11/30 (36%), Positives = 15/30 (50%)

Query: 21  APNEGRSNIKGDELNIAVLLFLYTLQGIPL 50
           APN G   +  +E    + +FLY L   PL
Sbjct: 171 APNNGAVKVLANEFLSILPIFLYALGEQPL 200


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.323    0.138    0.437 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 131,873
Number of Sequences: 429
Number of extensions: 5339
Number of successful extensions: 12
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 8
Number of HSP's gapped (non-prelim): 4
length of query: 515
length of database: 140,377
effective HSP length: 61
effective length of query: 454
effective length of database: 114,208
effective search space: 51850432
effective search space used: 51850432
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 46 (22.6 bits)