GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA005430-TA|BGIBMGA005430-PA|undefined
         (130 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    23   0.83 
DQ855484-1|ABH88171.1|  130|Apis mellifera chemosensory protein ...    21   4.4  
AJ973401-1|CAJ01448.1|  130|Apis mellifera hypothetical protein ...    21   4.4  
AF481963-1|AAN59784.1|  130|Apis mellifera antennal-specific pro...    21   4.4  

>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 23.4 bits (48), Expect = 0.83
 Identities = 7/14 (50%), Positives = 11/14 (78%)

Query: 11  AFLVNCQPPHPDVV 24
           AF + C+ P+PD+V
Sbjct: 214 AFYICCEEPYPDIV 227


>DQ855484-1|ABH88171.1|  130|Apis mellifera chemosensory protein 3
          protein.
          Length = 130

 Score = 21.0 bits (42), Expect = 4.4
 Identities = 12/41 (29%), Positives = 19/41 (46%)

Query: 44 NPNLQEVLPLTSLLHNGEKLVYEREANKVSRNEIYNILTHA 84
          N N+ E+L    LL+N  K + +        NE+  +L  A
Sbjct: 31 NINVDEILHSDRLLNNYFKCLMDEGRCTAEGNELKRVLPDA 71


>AJ973401-1|CAJ01448.1|  130|Apis mellifera hypothetical protein
          protein.
          Length = 130

 Score = 21.0 bits (42), Expect = 4.4
 Identities = 12/41 (29%), Positives = 19/41 (46%)

Query: 44 NPNLQEVLPLTSLLHNGEKLVYEREANKVSRNEIYNILTHA 84
          N N+ E+L    LL+N  K + +        NE+  +L  A
Sbjct: 31 NINVDEILHSDRLLNNYFKCLMDEGRCTAEGNELKRVLPDA 71


>AF481963-1|AAN59784.1|  130|Apis mellifera antennal-specific
          protein 3c precursor protein.
          Length = 130

 Score = 21.0 bits (42), Expect = 4.4
 Identities = 12/41 (29%), Positives = 19/41 (46%)

Query: 44 NPNLQEVLPLTSLLHNGEKLVYEREANKVSRNEIYNILTHA 84
          N N+ E+L    LL+N  K + +        NE+  +L  A
Sbjct: 31 NINVDEILHSDRLLNNYFKCLMDEGRCTAEGNELKRVLPDA 71


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.319    0.136    0.413 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 45,562
Number of Sequences: 429
Number of extensions: 2248
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of query: 130
length of database: 140,377
effective HSP length: 51
effective length of query: 79
effective length of database: 118,498
effective search space:  9361342
effective search space used:  9361342
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.3 bits)
S2: 40 (20.2 bits)