Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA005409-TA|BGIBMGA005409-PA|IPR006688|ADP-ribosylation
factor
(250 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23H4.07c |srp102||signal recognition particle receptor beta ... 72 9e-14
SPBC1539.08 |||ADP-ribosylation factor, Arf family|Schizosacchar... 62 1e-10
SPBC4F6.18c |arf1||ADP-ribosylation factor Arf1|Schizosaccharomy... 58 1e-09
SPAC22F3.05c |alp41||ADP-ribosylation factor Alp41|Schizosacchar... 48 2e-06
SPBC31F10.06c |sar1||ADP-ribosylation factor Sar1|Schizosaccharo... 43 4e-05
SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr 2||... 38 0.001
SPAC3H1.01c |orp3|orc3, SPAP14E8.06c|origin recognition complex ... 29 0.85
SPAC4C5.02c |ryh1|hos1|GTPase Ryh1|Schizosaccharomyces pombe|chr... 28 1.1
SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces pom... 28 1.1
SPAC23C11.06c |||hydrolase |Schizosaccharomyces pombe|chr 1|||Ma... 27 2.6
SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces ... 27 2.6
SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyc... 27 2.6
SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr 1|... 27 2.6
SPAC17H9.06c |||conserved fungal protein|Schizosaccharomyces pom... 27 3.4
SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces ... 26 4.5
SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein Pss1|Sch... 26 4.5
SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr 1|||... 26 4.5
SPBC24C6.06 |gpa1||G-protein alpha subunit |Schizosaccharomyces ... 25 7.9
SPAC23D3.03c |||GTPase activating protein |Schizosaccharomyces p... 25 7.9
SPAC6F6.15 |ypt5||GTPase Ypt5|Schizosaccharomyces pombe|chr 1|||... 25 7.9
SPBC106.16 |||20S proteasome component alpha 4|Schizosaccharomyc... 25 7.9
SPBC337.13c |gtr1||Gtr1/RagA G protein Gtr1|Schizosaccharomyces ... 25 7.9
SPAC57A10.12c |ura3||dihydroorotate dehydrogenase Ura3|Schizosac... 25 7.9
SPAC11E3.10 |||VanZ-like family protein|Schizosaccharomyces pomb... 25 7.9
SPBC1703.04 |mlh1||MutL family protein Mlh1 |Schizosaccharomyces... 25 7.9
SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|ch... 25 7.9
SPAC5D6.13 ||SPAPJ735.02c|Golgi phosphoprotein 3 family|Schizosa... 25 7.9
>SPAC23H4.07c |srp102||signal recognition particle receptor beta
subunit Srp102 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 227
Score = 71.7 bits (168), Expect = 9e-14
Identities = 55/178 (30%), Positives = 95/178 (53%), Gaps = 11/178 (6%)
Query: 24 LLSLIVLAVTLIFWWIFSRRYTLRN---SVLLMGLSDSGKTLLFVRLAYSQYRQTFTSMK 80
+++ I++ + IF R T++ +V L+G SDSGKT LF L Y + + T S++
Sbjct: 11 IVATIIIGAIISTLGIFFTRKTIQKKLPAVFLIGPSDSGKTSLFCELIYKEKKTTVPSIE 70
Query: 81 ENIEEYITSNKTLKIVDLPGQERLRNKFFEQHKS--SAKGIVFVIDSINIQKEIRDVAEY 138
N E + +VDLPG R + + + K +VFV++S I +++ +V
Sbjct: 71 PN--EAVWKYGAW-LVDLPGHPRAKRWITTKFSGNYNVKAVVFVLNSATIDRDVHEVGLM 127
Query: 139 LY-TILCDPIIQGNTTPLLILCNKQDQPLAKGSQVIKGLLEKEINLVRVTKSNQLQSV 195
L+ TIL + + LLI CNK D A+ ++ I+ LL+ E++ + K+ QL+S+
Sbjct: 128 LFDTIL--KCRKHHVPHLLIACNKFDLFTAQPAEKIQQLLKAELHNILEEKNLQLESI 183
>SPBC1539.08 |||ADP-ribosylation factor, Arf
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 184
Score = 61.7 bits (143), Expect = 1e-10
Identities = 40/140 (28%), Positives = 73/140 (52%), Gaps = 5/140 (3%)
Query: 40 FSRRYTLRNS-VLLMGLSDSGKTLLFVRLAYSQYRQTFTSMKENIEEYITSNKTLKIVDL 98
FSR ++ + +L++GL +GKT + +L +Q T ++ N+E N + D+
Sbjct: 13 FSRLFSNKEMRILMLGLDAAGKTTILYKLKLNQSVVTIPTVGFNVETVTYKNIKFNVWDV 72
Query: 99 PGQERLRNKFFEQHKSSAKGIVFVIDSINIQKEIRDVAEYLYTILCDPIIQGNTTPLLIL 158
GQ+++R + + + KG++FV+DS + I + + L+ I+ D + LL+L
Sbjct: 73 GGQDKIR-PLWRHYFTGTKGLIFVVDSAD-SNRISEARQELHRIISDR--EMRDCLLLVL 128
Query: 159 CNKQDQPLAKGSQVIKGLLE 178
NKQD P A I +L+
Sbjct: 129 ANKQDLPGALSPAQITDVLQ 148
>SPBC4F6.18c |arf1||ADP-ribosylation factor Arf1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 180
Score = 58.0 bits (134), Expect = 1e-09
Identities = 39/144 (27%), Positives = 76/144 (52%), Gaps = 7/144 (4%)
Query: 30 LAVTLIFWWIFSRRYTLRNSVLLMGLSDSGKTLLFVRLAYSQYRQTFTSMKENIEEYITS 89
L+++ +F +F +R +L++GL +GKT + +L + T ++ N+E
Sbjct: 3 LSISKLFQSLFGKR---EMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYR 59
Query: 90 NKTLKIVDLPGQERLRNKFFEQHKSSAKGIVFVIDSINIQKEIRDVAEYLYTILCDPIIQ 149
N + + D+ GQ+++R + + + +GI+FV+DS N ++ I + E L +L + ++
Sbjct: 60 NISFTVWDVGGQDKIR-PLWRHYFQNTQGIIFVVDS-NDRERISEAHEELQRMLNEDELR 117
Query: 150 GNTTPLLILCNKQDQPLAKGSQVI 173
LL+ NKQD P A + I
Sbjct: 118 --DALLLVFANKQDLPNAMNAAEI 139
>SPAC22F3.05c |alp41||ADP-ribosylation factor
Alp41|Schizosaccharomyces pombe|chr 1|||Manual
Length = 186
Score = 47.6 bits (108), Expect = 2e-06
Identities = 35/128 (27%), Positives = 61/128 (47%), Gaps = 4/128 (3%)
Query: 50 VLLMGLSDSGKTLLFVRLAYSQYRQTFTSMKENIEEYITSNKTLKIVDLPGQERLRNKFF 109
VLL+GL ++GKT + L + + I I D+ GQ+ LRN F+
Sbjct: 19 VLLLGLDNAGKTTILKCLLNEDVNEVSPTFGFQIRTLEVEGLRFTIWDIGGQKTLRN-FW 77
Query: 110 EQHKSSAKGIVFVIDSINIQKEIRDVAEYLYTILCDPIIQGNTTPLLILCNKQDQPLAKG 169
+ + S + I++V+DS++ + + L +L + + T +L+L NK D A
Sbjct: 78 KNYFESTEAIIWVVDSLD-DLRLEECRNTLQELLVEEKLL--FTSILVLANKSDVSGALS 134
Query: 170 SQVIKGLL 177
S+ I +L
Sbjct: 135 SEEISKIL 142
>SPBC31F10.06c |sar1||ADP-ribosylation factor
Sar1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 190
Score = 43.2 bits (97), Expect = 4e-05
Identities = 32/128 (25%), Positives = 55/128 (42%), Gaps = 4/128 (3%)
Query: 50 VLLMGLSDSGKTLLFVRLAYSQYRQTFTSMKENIEEYITSNKTLKIVDLPGQERLRNKFF 109
+L +GL ++GKT L L + ++ EE N DL G ++ R + +
Sbjct: 23 MLFLGLDNAGKTTLLHMLKNDRLAVMQPTLHPTSEELAIGNVRFTTFDLGGHQQAR-RLW 81
Query: 110 EQHKSSAKGIVFVIDSINIQKEIRDVAEYLYTILCDPIIQGNTTPLLILCNKQDQPLAKG 169
+ GIV+++D + ++ AE + + + + P LIL NK D P A
Sbjct: 82 RDYFPEVNGIVYLVDCCDFERLSESKAELDALLAMEELAR---VPFLILGNKIDAPGAIS 138
Query: 170 SQVIKGLL 177
+K L
Sbjct: 139 EDELKAAL 146
>SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 203
Score = 38.3 bits (85), Expect = 0.001
Identities = 31/98 (31%), Positives = 47/98 (47%), Gaps = 7/98 (7%)
Query: 50 VLLMGLSDSGKTLLFVRLAYSQYRQTFTS---MKENIEEYITSNKTLK--IVDLPGQERL 104
+LL+G S GK+ L +R A Y +++ S + I + KT+K I D GQER
Sbjct: 11 LLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTFELEGKTVKLQIWDTAGQERF 70
Query: 105 RNKFFEQHKSSAKGIVFVIDSINIQKEIRDVAEYLYTI 142
R + A GI+ V D + Q +V ++L I
Sbjct: 71 RT-ITSSYYRGAHGIIIVYD-VTDQDSFNNVKQWLQEI 106
>SPAC3H1.01c |orp3|orc3, SPAP14E8.06c|origin recognition complex
subunit Orp3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 690
Score = 28.7 bits (61), Expect = 0.85
Identities = 16/59 (27%), Positives = 35/59 (59%), Gaps = 2/59 (3%)
Query: 140 YTILCDPIIQGNTTPLLILCNKQDQPLAKGSQVIKGL-LEKEIN-LVRVTKSNQLQSVD 196
Y +C I++ N+T L + ++ + G+Q +K L + +E++ L+R + +N L+ V+
Sbjct: 410 YKSICQAILRMNSTKALACLDYLNENIFTGNQTMKCLEIHQELSELIRNSSTNYLEPVE 468
>SPAC4C5.02c |ryh1|hos1|GTPase Ryh1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 201
Score = 28.3 bits (60), Expect = 1.1
Identities = 35/124 (28%), Positives = 58/124 (46%), Gaps = 14/124 (11%)
Query: 44 YTLRN-SVLLMGLSDSGKTLLFVRLAYSQYRQTFTS---MKENIEEYITSNKT--LKIVD 97
++LR ++ +G GKT L R Y Q+ T+ + + + ++T L++ D
Sbjct: 7 FSLRKFKLVFLGEQSVGKTSLITRFMYDQFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 66
Query: 98 LPGQERLRNKFFEQ-HKSSAKGIVFVIDS----INIQKEIRDV-AEYLYTILCDPIIQGN 151
GQER R+ SS IV+ I + +N +K I DV AE ++ ++ GN
Sbjct: 67 TAGQERFRSLIPSYIRDSSVAIIVYDITNHNSFVNTEKWIEDVRAERGDDVII--VLVGN 124
Query: 152 TTPL 155
T L
Sbjct: 125 KTDL 128
>SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1562
Score = 28.3 bits (60), Expect = 1.1
Identities = 23/99 (23%), Positives = 44/99 (44%), Gaps = 6/99 (6%)
Query: 112 HKSSAKGIVFVIDSINIQKEIRDVAEYLYTILCDPIIQGNTTPLLILCNKQDQPLAKGSQ 171
H +S +V VID + +I + E L+ + + ++ ++ +I C A Q
Sbjct: 1173 HSNSLAHLVIVIDGSTLA-DIENDPE-LFLLFINTAVEADS---VICCRSSPMQKALMVQ 1227
Query: 172 VIKGLLEKEINLVRVTKSNQLQSVDPSEGNIGSFLGKEG 210
++ LEK + L +N + + + IG G+EG
Sbjct: 1228 KVRNTLEKAVTLAIGDGANDIAMIQEAHVGIG-IAGREG 1265
Score = 27.9 bits (59), Expect = 1.5
Identities = 9/22 (40%), Positives = 18/22 (81%)
Query: 20 RYITLLSLIVLAVTLIFWWIFS 41
+YI ++S+IVL +T + W++F+
Sbjct: 1440 QYINIISIIVLVLTSLAWFLFN 1461
>SPAC23C11.06c |||hydrolase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 535
Score = 27.1 bits (57), Expect = 2.6
Identities = 18/50 (36%), Positives = 29/50 (58%), Gaps = 4/50 (8%)
Query: 106 NKFFEQHKSSAKGIVFVIDSINIQKEIRDVAEYLYTILCDPIIQGNTTPL 155
N F +H S KGIVFV D+ ++Q ++D ++L L ++G +PL
Sbjct: 363 NVFAARHLSEVKGIVFV-DAGSVQ-TLKDSGQFLSRFLL--FVRGWLSPL 408
>SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 905
Score = 27.1 bits (57), Expect = 2.6
Identities = 14/51 (27%), Positives = 25/51 (49%)
Query: 49 SVLLMGLSDSGKTLLFVRLAYSQYRQTFTSMKENIEEYITSNKTLKIVDLP 99
S L G S +GKTLL LA + ++ ++ EY+ + +++ P
Sbjct: 616 SFLFCGPSGTGKTLLTKALASFMFDDENAMIRIDMSEYMEKHSVSRLIGAP 666
>SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 781
Score = 27.1 bits (57), Expect = 2.6
Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 4/54 (7%)
Query: 153 TPLLILCNKQDQPLAKGSQVIKGLLEKEINLVRVTKSNQLQSVDPSEGNIGSFL 206
TP+ + ++ +P G +K LLEK ++ + +N S PS+G GSF+
Sbjct: 105 TPIPVSASRHHKPHHSG---LKNLLEKAMHPGHKSNANSPTSESPSKG-FGSFI 154
>SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 200
Score = 27.1 bits (57), Expect = 2.6
Identities = 24/89 (26%), Positives = 38/89 (42%), Gaps = 6/89 (6%)
Query: 41 SRRYTLRNSVLLMGLSDSGKTLLFVRLAYSQYRQTFTS-----MKENIEEYITSNKTLKI 95
++ Y +LL+G S GK+ L +R + + +F + K E L+I
Sbjct: 3 TKSYDYLIKLLLIGDSGVGKSCLLLRFSEDSFTPSFITTIGIDFKIRTIELDGKRIKLQI 62
Query: 96 VDLPGQERLRNKFFEQHKSSAKGIVFVID 124
D GQER R + A GI+ + D
Sbjct: 63 WDTAGQERFRT-ITTAYYRGAMGILLLYD 90
>SPAC17H9.06c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 601
Score = 26.6 bits (56), Expect = 3.4
Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 5/69 (7%)
Query: 178 EKEINLVRVTK--SNQLQSVDPSEGNIGSFLGKEGKDFEFSHIRNKVEFAECSANTNDDE 235
E+ + + R TK SN L S +E S G + +FS I+ K + S+ ++
Sbjct: 218 EENVTITRKTKLSSNILYSDSDTERQSDS--GSKNVARQFSRIKRKRKVLSSSSEDDESS 275
Query: 236 NPTD-IKPL 243
+P D +KP+
Sbjct: 276 SPEDLLKPI 284
>SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 2344
Score = 26.2 bits (55), Expect = 4.5
Identities = 13/45 (28%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Query: 98 LPGQERLRNKFFEQHKSSAKGIVFVIDSI-NIQKEIRDVAEYLYT 141
L + L N FFE+ K+ + ++++DS+ ++ EIR + + T
Sbjct: 440 LAEDQLLLNNFFEELKNKLESDLYLLDSVFDLVPEIRSLLQQFST 484
>SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein
Pss1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 720
Score = 26.2 bits (55), Expect = 4.5
Identities = 21/71 (29%), Positives = 30/71 (42%), Gaps = 1/71 (1%)
Query: 172 VIKGLLEKEINLVRVTKSNQLQSVDPSEGNIGSFLGKEGKDFEFSHIRNKV-EFAECSAN 230
VI + I+++ SN+ S G FLG+ K E S+ RN V +
Sbjct: 18 VIAVARNRAIDVIVNEVSNRSTPSLVSYGERSRFLGEAAKSAEASNFRNTVGSLKRLAGR 77
Query: 231 TNDDENPTDIK 241
T DD DI+
Sbjct: 78 TYDDPEIKDIE 88
>SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 948
Score = 26.2 bits (55), Expect = 4.5
Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 30 LAVTLIFWWIFSRRYTLRNSVLLMGLSDSGKTLLFVRLAYSQYRQTFTSMK 80
L + L F +FS+ R+ VLL G +GKTLL +A ++ F S+K
Sbjct: 671 LQLPLQFPELFSQGLKPRSGVLLYGPPGTGKTLLAKAVA-TELSLEFVSIK 720
>SPBC24C6.06 |gpa1||G-protein alpha subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 407
Score = 25.4 bits (53), Expect = 7.9
Identities = 13/23 (56%), Positives = 16/23 (69%), Gaps = 2/23 (8%)
Query: 50 VLLMGLSDSGKTLLF--VRLAYS 70
VLL+G DSGKT + +RL YS
Sbjct: 77 VLLLGAGDSGKTTIMKQMRLLYS 99
>SPAC23D3.03c |||GTPase activating protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 472
Score = 25.4 bits (53), Expect = 7.9
Identities = 9/17 (52%), Positives = 14/17 (82%)
Query: 192 LQSVDPSEGNIGSFLGK 208
L+SVD S G++GS++ K
Sbjct: 4 LESVDASSGSVGSYMSK 20
>SPAC6F6.15 |ypt5||GTPase Ypt5|Schizosaccharomyces pombe|chr
1|||Manual
Length = 211
Score = 25.4 bits (53), Expect = 7.9
Identities = 24/70 (34%), Positives = 38/70 (54%), Gaps = 10/70 (14%)
Query: 45 TLRNSVLLMGLSDSGKT---LLFVRLAYSQYRQT-----FTSMKENIEEYITSNKTLKIV 96
T+ ++L+G S GK+ L FV+ + YR++ F + I+E TS K L+I
Sbjct: 12 TINQKLVLLGDSAVGKSSLVLRFVKDQFDDYRESTIGAAFLTQTLPIDEN-TSVK-LEIW 69
Query: 97 DLPGQERLRN 106
D GQER ++
Sbjct: 70 DTAGQERYKS 79
>SPBC106.16 |||20S proteasome component alpha 4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 259
Score = 25.4 bits (53), Expect = 7.9
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 184 VRVTKSNQLQSVDPSEGNIGSFLGKEGKDFEFSH 217
+ + S+ L+ V + GNI + GKD EF H
Sbjct: 188 IHLAVSSLLEVVQTASGNIELAIMDPGKDVEFLH 221
>SPBC337.13c |gtr1||Gtr1/RagA G protein Gtr1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 308
Score = 25.4 bits (53), Expect = 7.9
Identities = 23/81 (28%), Positives = 36/81 (44%), Gaps = 9/81 (11%)
Query: 46 LRNSVLLMGLSDSGK----TLLFVRLAYSQYRQTFTSMK-ENIEEYITSNKTLKIVDLPG 100
+R VLLMG S SGK +++F R+ ++ E+ N L + D G
Sbjct: 1 MRKKVLLMGRSGSGKSSMRSIVFSNYVAKDTRRLGATIDIEHSHVRFLGNLVLNLWDCGG 60
Query: 101 QERLRNKFFEQHKSSAKGIVF 121
QE F E + S+ + +F
Sbjct: 61 QE----AFMENYLSAQRDHIF 77
>SPAC57A10.12c |ura3||dihydroorotate dehydrogenase
Ura3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 443
Score = 25.4 bits (53), Expect = 7.9
Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 4/49 (8%)
Query: 105 RNKFFEQHKSSAKGIVFVIDSINIQKEIRDVAEYLYTILCDPIIQGNTT 153
RNK H +V + +N ++E+ D+A+ L D +I GNTT
Sbjct: 293 RNKLNSPHPPV---LVKIAPDLN-EEELTDIADVLKKCKIDGVIVGNTT 337
>SPAC11E3.10 |||VanZ-like family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 162
Score = 25.4 bits (53), Expect = 7.9
Identities = 10/30 (33%), Positives = 20/30 (66%), Gaps = 2/30 (6%)
Query: 28 IVLAVTLIFWWIF--SRRYTLRNSVLLMGL 55
+ +TL+F+W+F SRR + ++L+ G+
Sbjct: 48 VFFLLTLVFYWVFDLSRRRATQLTILVCGV 77
>SPBC1703.04 |mlh1||MutL family protein Mlh1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 684
Score = 25.4 bits (53), Expect = 7.9
Identities = 19/58 (32%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
Query: 187 TKSNQLQSVDPSEGNIGSFLGKEGKDFEFSHIRNKVEFAECSANTNDDENPTDIKPLQ 244
T N L DP E +I S L ++ N++ SAN+N + DIK LQ
Sbjct: 379 TYENYLVRTDPRERSIKSMLSDNFLQRSSNNYDNEIIEKVDSANSNKNAT-NDIKDLQ 435
>SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 750
Score = 25.4 bits (53), Expect = 7.9
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 70 SQYRQTFTSMKENIEEYITSNKTLK 94
S+ Q+ T M+ ++ YITSN LK
Sbjct: 428 SRLLQSRTQMQTELDSYITSNSQLK 452
>SPAC5D6.13 ||SPAPJ735.02c|Golgi phosphoprotein 3
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 337
Score = 25.4 bits (53), Expect = 7.9
Identities = 42/161 (26%), Positives = 67/161 (41%), Gaps = 24/161 (14%)
Query: 43 RYTLRNSVLLMGLSDSGKTLLFVR--LAYS---------QYRQTFTSMKE-NIEEYITSN 90
R TL VLL+GL D L F ++YS +R K+ N + + ++
Sbjct: 59 RLTLMEEVLLLGLKDKQGYLSFWNDSISYSLRGCILMELAFRGKLRMQKDVNRKRFPLAD 118
Query: 91 KTLKIVD--LPGQERLRNKFFEQHKSSAKGIVFVIDSI-----NIQK---EIRDVAEYLY 140
+ +++VD L G+ L H S + ID + N+ K ++R V E L
Sbjct: 119 RVVELVDEKLTGEVLLDEAIKMIHTSELMSVTSWIDLMSGETWNVMKIGYQLRQVRERLA 178
Query: 141 TILCDPIIQGNTTPLLILCNKQDQPLAKGSQVIKGLLEKEI 181
L D I N +L + P+A S IK ++K +
Sbjct: 179 KGLVDKGILRNEKKNFLLFDMPTHPIADTS--IKDSIKKRV 217
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.136 0.387
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,172,253
Number of Sequences: 5004
Number of extensions: 48958
Number of successful extensions: 180
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 164
Number of HSP's gapped (non-prelim): 29
length of query: 250
length of database: 2,362,478
effective HSP length: 71
effective length of query: 179
effective length of database: 2,007,194
effective search space: 359287726
effective search space used: 359287726
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 53 (25.4 bits)
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