GeneModel BLAST Result against human

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA005405-TA|BGIBMGA005405-PA|IPR002110|Ankyrin
         (121 letters)

Database: human 
           224,733 sequences; 73,234,838 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U68567-1|AAC50812.1|  988|Homo sapiens lysosomal acid alpha-mann...    29   3.9  
U60899-1|AAC51362.1| 1010|Homo sapiens lysosomal alpha-mannosida...    29   3.9  
U60266-1|AAC34130.1| 1011|Homo sapiens lysosomal alpha-mannosida...    29   3.9  
U05572-1|AAB03816.1|  987|Homo sapiens alpha-mannosidase protein.      29   3.9  
BC000736-1|AAH00736.1| 1011|Homo sapiens mannosidase, alpha, cla...    29   3.9  
AB209921-1|BAD93158.1| 1007|Homo sapiens mannosidase, alpha, cla...    29   3.9  
AK098479-1|BAC05314.1|  353|Homo sapiens protein ( Homo sapiens ...    29   5.2  

>U68567-1|AAC50812.1|  988|Homo sapiens lysosomal acid
           alpha-mannosidase protein.
          Length = 988

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 16/36 (44%), Positives = 17/36 (47%)

Query: 1   MSNNLRQWARGGAESRLERAVLAGQGRRLLAEAETL 36
           M N    W RG     L+ A  A  G RLLAE E L
Sbjct: 807 MENGSGAWVRGRHLVLLDTAQAAAAGHRLLAEQEVL 842


>U60899-1|AAC51362.1| 1010|Homo sapiens lysosomal alpha-mannosidase
           protein.
          Length = 1010

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 16/36 (44%), Positives = 17/36 (47%)

Query: 1   MSNNLRQWARGGAESRLERAVLAGQGRRLLAEAETL 36
           M N    W RG     L+ A  A  G RLLAE E L
Sbjct: 829 MENGSGAWVRGRHLVLLDTAQAAAAGHRLLAEQEVL 864


>U60266-1|AAC34130.1| 1011|Homo sapiens lysosomal alpha-mannosidase
           protein.
          Length = 1011

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 16/36 (44%), Positives = 17/36 (47%)

Query: 1   MSNNLRQWARGGAESRLERAVLAGQGRRLLAEAETL 36
           M N    W RG     L+ A  A  G RLLAE E L
Sbjct: 830 MENGSGAWVRGRHLVLLDTAQAAAAGHRLLAEQEVL 865


>U05572-1|AAB03816.1|  987|Homo sapiens alpha-mannosidase protein.
          Length = 987

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 16/36 (44%), Positives = 17/36 (47%)

Query: 1   MSNNLRQWARGGAESRLERAVLAGQGRRLLAEAETL 36
           M N    W RG     L+ A  A  G RLLAE E L
Sbjct: 806 MENGSGAWVRGRHLVLLDTAQAAAAGHRLLAEQEVL 841


>BC000736-1|AAH00736.1| 1011|Homo sapiens mannosidase, alpha, class
           2B, member 1 protein.
          Length = 1011

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 16/36 (44%), Positives = 17/36 (47%)

Query: 1   MSNNLRQWARGGAESRLERAVLAGQGRRLLAEAETL 36
           M N    W RG     L+ A  A  G RLLAE E L
Sbjct: 830 MENGSGAWVRGRHLVLLDTAQAAAAGHRLLAEQEVL 865


>AB209921-1|BAD93158.1| 1007|Homo sapiens mannosidase, alpha, class
           2B, member 1 precursor variant protein.
          Length = 1007

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 16/36 (44%), Positives = 17/36 (47%)

Query: 1   MSNNLRQWARGGAESRLERAVLAGQGRRLLAEAETL 36
           M N    W RG     L+ A  A  G RLLAE E L
Sbjct: 826 MENGSGAWVRGRHLVLLDTAQAAAAGHRLLAEQEVL 861


>AK098479-1|BAC05314.1|  353|Homo sapiens protein ( Homo sapiens
           cDNA FLJ25613 fis, clone STM01546. ).
          Length = 353

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 11/27 (40%), Positives = 17/27 (62%)

Query: 83  CRDEAGVGLLHKAVFYDFMDIVDYLVK 109
           C+D  G GLLH A     +++V YL++
Sbjct: 219 CKDRKGYGLLHTAAASGQIEVVKYLLR 245


  Database: human
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 73,234,838
  Number of sequences in database:  224,733
  
Lambda     K      H
   0.322    0.136    0.402 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,183,052
Number of Sequences: 224733
Number of extensions: 445007
Number of successful extensions: 942
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 935
Number of HSP's gapped (non-prelim): 7
length of query: 121
length of database: 73,234,838
effective HSP length: 81
effective length of query: 40
effective length of database: 55,031,465
effective search space: 2201258600
effective search space used: 2201258600
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 59 (27.9 bits)