GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA005404-TA|BGIBMGA005404-PA|undefined
         (390 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3A11.02 |cps3|mug188|zinc finger protein Cps3|Schizosaccharo...    28   2.0  
SPCC553.02 |||glutamine-dependent NAD|Schizosaccharomyces pombe|...    28   2.6  
SPBC2F12.09c |atf21||transcription factor Atf21|Schizosaccharomy...    28   2.6  
SPBC725.16 |res1|sct1|MBF transcription factor complex subunit R...    27   3.4  
SPBC1826.01c |mot1||TATA-binding protein associated factor Mot1|...    27   3.4  
SPBC1A4.07c |||U3 snoRNP-associated protein Sof1|Schizosaccharom...    27   3.4  
SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein |S...    27   3.4  
SPBC28F2.10c |kap1||chromatin remodeling complex subunit Ngg1 |S...    27   4.5  
SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    27   6.0  
SPCC364.02c |bis1||stress response protein Bis1|Schizosaccharomy...    26   7.9  

>SPAC3A11.02 |cps3|mug188|zinc finger protein
           Cps3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 583

 Score = 28.3 bits (60), Expect = 2.0
 Identities = 17/62 (27%), Positives = 29/62 (46%), Gaps = 2/62 (3%)

Query: 304 PSNTVRSTSNREPTCCYRTSNATKSDKHYDEPCNDMCFHKESSSKPQVKNPRLIIKKEAL 363
           PS T   +S++  +     +  + +DK    P   M     S  K ++K+  L+IKKE  
Sbjct: 103 PSTTAMGSSSQNISAAPMANIISNNDKIL--PMTTMASATASEEKNRIKDEALVIKKEES 160

Query: 364 NI 365
           N+
Sbjct: 161 NV 162


>SPCC553.02 |||glutamine-dependent NAD|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 700

 Score = 27.9 bits (59), Expect = 2.6
 Identities = 12/34 (35%), Positives = 19/34 (55%)

Query: 51  QRYAHQTPLSPSKATTLEKEHNSEQYGRDFTTYD 84
           +R+ H   ++  K TTL   +++E YG D   YD
Sbjct: 638 KRFFHYYGINRHKMTTLTPSYHAETYGVDDNRYD 671


>SPBC2F12.09c |atf21||transcription factor Atf21|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 355

 Score = 27.9 bits (59), Expect = 2.6
 Identities = 18/68 (26%), Positives = 33/68 (48%), Gaps = 3/68 (4%)

Query: 4   RSFSPNLQLSSSDEETKDSMMRSNSASGRPGCSYIQQYSH--IPETSAFQRYAHQTPLSP 61
           +S SPN   +SSDE   +  + S+   G PG + +   S+   P+    +R+  +  ++ 
Sbjct: 223 QSQSPNGDYNSSDESCSNKTVASSQRRGTPGSNNVHTASNNETPDMKR-RRFLERNRIAA 281

Query: 62  SKATTLEK 69
           SK    +K
Sbjct: 282 SKCRQKKK 289


>SPBC725.16 |res1|sct1|MBF transcription factor complex subunit
           Res1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 637

 Score = 27.5 bits (58), Expect = 3.4
 Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 2/44 (4%)

Query: 304 PSNTVRSTSNREPTCCYRTSNATKSDKHYDEPCNDMCFHKESSS 347
           P +T    SNR+PT  YR ++  K  K +  P + + +   SS+
Sbjct: 110 PMSTFTPQSNRKPTEAYRRNSPVK--KSFSRPSHSLLYPYTSSN 151


>SPBC1826.01c |mot1||TATA-binding protein associated factor
            Mot1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1953

 Score = 27.5 bits (58), Expect = 3.4
 Identities = 11/28 (39%), Positives = 16/28 (57%)

Query: 109  AERVHKIRHKLNPVRDYRLMDTVHYLAQ 136
            A+ V  + H  NP+RD + MD  H + Q
Sbjct: 1810 ADTVIFVEHDWNPMRDLQAMDRAHRIGQ 1837


>SPBC1A4.07c |||U3 snoRNP-associated protein
           Sof1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 436

 Score = 27.5 bits (58), Expect = 3.4
 Identities = 19/47 (40%), Positives = 23/47 (48%), Gaps = 3/47 (6%)

Query: 171 NTRLGRRQHPERCSERCTTRGELQRLIDSLLRERVAHVE--RRKRRH 215
           N RL R +   R S R T      + +DS LRER  H+   RR  RH
Sbjct: 339 NVRLWRARASSRASIRSTREENRLKYLDS-LRERYKHIPEIRRIARH 384



 Score = 26.2 bits (55), Expect = 7.9
 Identities = 11/32 (34%), Positives = 18/32 (56%), Gaps = 1/32 (3%)

Query: 39  QQYSHIPETSAFQRYAHQTPLSPSKATTLEKE 70
           ++Y HIPE     R+ H  P +  KA  +++E
Sbjct: 370 ERYKHIPEIRRIARHRH-LPTNVKKAAEIKRE 400


>SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 971

 Score = 27.5 bits (58), Expect = 3.4
 Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 3/53 (5%)

Query: 247 QTSEDMIANDQNRGSEIVSDKRRLDESSHKYPKSHDKLGTSDLHHKNRIRIDE 299
           QT + ++  D  R   I  DK  + ES H+YP   +  G +  ++ N + + E
Sbjct: 917 QTGKFLVTKDLGRNVRI--DKEHVPES-HRYPSLFEGTGVNGHYYDNNLVVHE 966


>SPBC28F2.10c |kap1||chromatin remodeling complex subunit Ngg1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 551

 Score = 27.1 bits (57), Expect = 4.5
 Identities = 17/67 (25%), Positives = 30/67 (44%), Gaps = 4/67 (5%)

Query: 16  DEETKDSMMRSNSASGRPGCSYIQQYSHIPETSAFQRYAHQTPLSPSKATTLEKEHNSEQ 75
           ++  +  + +  S S  P  S +++ S  P+ S     AH   +SP    T+E E +   
Sbjct: 104 EDNVEQEIKQKRSLSESPQESMLEKVSKKPKVSE----AHNEEISPENVETIENELDLPV 159

Query: 76  YGRDFTT 82
            G+D  T
Sbjct: 160 KGKDEQT 166


>SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 647

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 23/91 (25%), Positives = 37/91 (40%), Gaps = 3/91 (3%)

Query: 241 ASHKNRQTSEDMIANDQNRGSEIVS-DKRRLDESSHKYPKSHDKLGTSDLHHKNRIRIDE 299
           A H   +  E  I  +      IV  D  ++DE     P +   LGT +    N+     
Sbjct: 81  AQHAQEEQQEQTILQEPGFTQTIVEKDADQVDEPLE--PIASSALGTVEPPTDNKPSAST 138

Query: 300 CSPGPSNTVRSTSNREPTCCYRTSNATKSDK 330
            +  P+   R+TS  EP     +S+++ S K
Sbjct: 139 STAVPTTEARNTSITEPANSPSSSSSSASTK 169


>SPCC364.02c |bis1||stress response protein Bis1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 384

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 5/44 (11%)

Query: 233 GKTGDIIVASHKNRQTSEDMIANDQNRGSEIVSDKRRLDESSHK 276
           G+   I VAS++N+ TSED  +       E++ D+ RL    HK
Sbjct: 110 GENKPISVASYQNKFTSEDNAS-----FGELMEDESRLRAEQHK 148


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.317    0.131    0.390 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,862,386
Number of Sequences: 5004
Number of extensions: 81781
Number of successful extensions: 227
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 223
Number of HSP's gapped (non-prelim): 11
length of query: 390
length of database: 2,362,478
effective HSP length: 74
effective length of query: 316
effective length of database: 1,992,182
effective search space: 629529512
effective search space used: 629529512
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 55 (26.2 bits)