GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA005404-TA|BGIBMGA005404-PA|undefined
         (390 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X91509-1|CAA62809.1|  103|Apis mellifera histone H4 protein.           26   0.48 
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    23   3.4  
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    23   4.5  
DQ058012-1|AAY57281.1|  373|Apis mellifera venom allergen acid p...    22   7.8  
AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatas...    22   7.8  

>X91509-1|CAA62809.1|  103|Apis mellifera histone H4 protein.
          Length = 103

 Score = 26.2 bits (55), Expect = 0.48
 Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 2/44 (4%)

Query: 173 RLGRRQHPERCSERC--TTRGELQRLIDSLLRERVAHVERRKRR 214
           RL RR   +R S      TRG L+  +++++R+ V + E  KR+
Sbjct: 37  RLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHTKRK 80


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 23.4 bits (48), Expect = 3.4
 Identities = 27/111 (24%), Positives = 50/111 (45%), Gaps = 9/111 (8%)

Query: 7   SPNLQLSSSDEETKDSM--MRSNSASGRP-----GCSYIQQYSHIPET-SAFQRYAHQTP 58
           SPN +++S+   +  S    +  +A+G+P     G +  Q+   +  T S       +TP
Sbjct: 512 SPNPRIASAPSSSTSSSPPAKGAAAAGQPSKRNGGETNKQELKRLKSTVSLLPLPLARTP 571

Query: 59  LSPSKATTLEKEHNSEQYGRDFTTYDGITA-RGRRQCASVPCKRDDAPRLA 108
              S ++T +K+  +   G  FT Y    A + +R+ +S   +R     LA
Sbjct: 572 SVMSASSTCKKDKKNAGSGSRFTIYKANKASKKKREKSSAKKERKATKTLA 622


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 23.0 bits (47), Expect = 4.5
 Identities = 12/37 (32%), Positives = 13/37 (35%)

Query: 245 NRQTSEDMIANDQNRGSEIVSDKRRLDESSHKYPKSH 281
           NRQ       N QN      +D  R D   H   K H
Sbjct: 508 NRQNDNKRNGNRQNDNQNNQNDNNRNDNQVHHSSKLH 544


>DQ058012-1|AAY57281.1|  373|Apis mellifera venom allergen acid
           phosphatase protein.
          Length = 373

 Score = 22.2 bits (45), Expect = 7.8
 Identities = 11/39 (28%), Positives = 25/39 (64%), Gaps = 4/39 (10%)

Query: 237 DIIVASHKNRQTSEDMIANDQNRGSEIVSDKRRLDESSH 275
           +++   +K  Q  E++I +++    E++ DKR +DES++
Sbjct: 316 EVLCPLYKYLQLIENVIPSNE----ELICDKRFVDESAN 350


>AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatase
           precursor protein.
          Length = 388

 Score = 22.2 bits (45), Expect = 7.8
 Identities = 11/39 (28%), Positives = 25/39 (64%), Gaps = 4/39 (10%)

Query: 237 DIIVASHKNRQTSEDMIANDQNRGSEIVSDKRRLDESSH 275
           +++   +K  Q  E++I +++    E++ DKR +DES++
Sbjct: 331 EVLCPLYKYLQLIENVIPSNE----ELICDKRFVDESAN 365


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.317    0.131    0.390 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 118,946
Number of Sequences: 429
Number of extensions: 5599
Number of successful extensions: 13
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 11
Number of HSP's gapped (non-prelim): 5
length of query: 390
length of database: 140,377
effective HSP length: 59
effective length of query: 331
effective length of database: 115,066
effective search space: 38086846
effective search space used: 38086846
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 45 (22.2 bits)