GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA005403-TA|BGIBMGA005403-PA|IPR001236|Lactate/malate
dehydrogenase, IPR010097|Malate dehydrogenase, NAD-dependent,
eukaryotes and gamma proteobacteria
         (309 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC306.08c |||malate dehydrogenase|Schizosaccharomyces pombe|ch...    84   3e-17
SPBP35G2.11c |||transcription related zf-ZZ type zinc finger pro...    31   0.28 
SPAC664.09 |ggt1||gamma-glutamyltranspeptidase Ggt1 |Schizosacch...    27   2.6  
SPAC110.02 |pds5||cohesin-associated protein Pds5|Schizosaccharo...    27   3.4  
SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces ...    27   4.5  
SPAPB2C8.01 |||glycoprotein |Schizosaccharomyces pombe|chr 1|||M...    26   7.8  
SPAC328.02 |||Ariadne homolog|Schizosaccharomyces pombe|chr 1|||...    26   7.8  

>SPCC306.08c |||malate dehydrogenase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 341

 Score = 83.8 bits (198), Expect = 3e-17
 Identities = 58/186 (31%), Positives = 91/186 (48%), Gaps = 3/186 (1%)

Query: 2   VPLVAEIQRLRGVYNPRTLLGCVELNCVRANTVLADFLKVPPEAVRVPVIGGASPNTMVP 61
           VP+  +     GV+ P+ L G   L+ VRA+   +       E + +PV+GG S  T+VP
Sbjct: 153 VPIFKKALERVGVHQPKHLFGVTTLDSVRASRFTSQVTNGKAELLHIPVVGGHSGATIVP 212

Query: 62  VLSAAVHPCTMTQEQIECVTSCIMSGTEAVSCAKGCSTETASLSGAYAVARNTINVVKGL 121
           +LS       +T E+ + +   I  G + V  AK     +A+LS AYA AR   +V++ L
Sbjct: 213 LLSQG--GVELTGEKRDALIHRIQFGGDEVVKAK-AGAGSATLSMAYAGARMASSVLRAL 269

Query: 122 QGAKNIVQCAYVDSLGTCAPDCQFFASEVILGSSGVEKNLGVPELTKFENCLLCNCLPYV 181
            G   + +C +V+S         FFAS V LG  GV+    V ++  +E  LL   L  +
Sbjct: 270 AGESGVEECTFVESPLYKDQGIDFFASRVTLGKDGVDTIHPVGKINDYEESLLKVALGEL 329

Query: 182 RNEIAR 187
           +  I +
Sbjct: 330 KKSITK 335


>SPBP35G2.11c |||transcription related zf-ZZ type zinc finger
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 397

 Score = 30.7 bits (66), Expect = 0.28
 Identities = 19/66 (28%), Positives = 29/66 (43%), Gaps = 4/66 (6%)

Query: 146 FASEVILGSSGVEKNLGVPELTKFENCLLCN-CLPYVRNEIARAVWLV-YTMCQECCCST 203
           F  E  L S+  E N   P L    + + CN CL  +RN+         + +C++C    
Sbjct: 35  FTKENNLKSNIFEHNNNSPTLRS--SSVACNTCLKIIRNDSFHCTKCFDFDVCRDCYAKQ 92

Query: 204 CYAHPC 209
            + HPC
Sbjct: 93  AFLHPC 98


>SPAC664.09 |ggt1||gamma-glutamyltranspeptidase Ggt1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 630

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 11/25 (44%), Positives = 18/25 (72%)

Query: 96  GCSTETASLSGAYAVARNTINVVKG 120
           G +T +A  SGA ++AR+++NV  G
Sbjct: 2   GINTSSAQSSGAASIARSSVNVKSG 26


>SPAC110.02 |pds5||cohesin-associated protein
           Pds5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1205

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 3/56 (5%)

Query: 98  STETASLSGAYAVARNTIN---VVKGLQGAKNIVQCAYVDSLGTCAPDCQFFASEV 150
           S +T        VAR+ +N   +    +G ++   C  V+ L  CAPD  F  S++
Sbjct: 38  SQDTIDRDSVLPVARSLVNNNLLHHKDKGIRSYTLCCIVELLRLCAPDAPFTLSQL 93


>SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1150

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 14/44 (31%), Positives = 22/44 (50%)

Query: 101 TASLSGAYAVARNTINVVKGLQGAKNIVQCAYVDSLGTCAPDCQ 144
           T S S +Y   ++TI+ V+G     NI  C  +D +    PD +
Sbjct: 133 THSRSSSYFAVKSTIDRVRGDFNTGNINHCVRLDYVRFGTPDAE 176


>SPAPB2C8.01 |||glycoprotein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1220

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 20/79 (25%), Positives = 29/79 (36%)

Query: 87  GTEAVSCAKGCSTETASLSGAYAVARNTINVVKGLQGAKNIVQCAYVDSLGTCAPDCQFF 146
           GT  V   +  S  T   SG+        +    + G   +V+ A     GT     QFF
Sbjct: 856 GTVEVVDPEAGSVTTTIYSGSVEYTTVLADASGSVTGTVEVVEPAAGTVTGTLTSGSQFF 915

Query: 147 ASEVILGSSGVEKNLGVPE 165
            + +   S  V  N+ V E
Sbjct: 916 TTTIAQASGSVSGNVEVIE 934


>SPAC328.02 |||Ariadne homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 504

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 13/38 (34%), Positives = 15/38 (39%), Gaps = 4/38 (10%)

Query: 223 SNW----TCDCPDACRDEYLASVCREMTCKCGTTELCW 256
           +NW    T +CP           C  MTCK    E CW
Sbjct: 281 ANWIHANTKECPKCSTTIEKNGGCNHMTCKKCKYEFCW 318


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.323    0.135    0.446 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,371,428
Number of Sequences: 5004
Number of extensions: 52532
Number of successful extensions: 130
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 122
Number of HSP's gapped (non-prelim): 8
length of query: 309
length of database: 2,362,478
effective HSP length: 73
effective length of query: 236
effective length of database: 1,997,186
effective search space: 471335896
effective search space used: 471335896
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.5 bits)
S2: 54 (25.8 bits)