Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA005403-TA|BGIBMGA005403-PA|IPR001236|Lactate/malate
dehydrogenase, IPR010097|Malate dehydrogenase, NAD-dependent,
eukaryotes and gamma proteobacteria
(309 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1371 - 26100553-26101767 113 2e-25
03_06_0127 - 31872840-31872912,31873021-31873115,31873199-318732... 113 2e-25
12_02_1221 - 27130321-27130491,27130616-27130664,27131120-271311... 106 2e-23
01_06_0072 + 26184592-26184828,26184934-26185107,26185591-261857... 104 1e-22
08_02_0774 - 21047696-21048889 103 1e-22
05_07_0204 - 28397597-28397737,28398225-28398342,28399215-283993... 103 1e-22
01_06_1220 + 35493575-35494765 103 1e-22
06_03_1511 - 30669292-30669401,30669894-30669930,30670012-306701... 31 1.6
06_01_1133 + 9364842-9364850,9364929-9365048,9365157-9365476,936... 29 3.6
09_04_0363 + 16957949-16958361,16958524-16958527 29 4.7
07_03_0481 - 18572206-18574314,18574591-18575185,18575304-185753... 29 4.7
04_03_0805 - 19850355-19850817,19851146-19851227,19852403-19852412 29 4.7
03_05_1088 + 30301654-30303480 29 6.3
03_01_0021 + 186827-187243 29 6.3
>07_03_1371 - 26100553-26101767
Length = 404
Score = 113 bits (272), Expect = 2e-25
Identities = 71/193 (36%), Positives = 104/193 (53%), Gaps = 7/193 (3%)
Query: 2 VPLVAEIQRLRGVYNPRTLLGCVELNCVRANTVLADFLKVPPEAVRVPVIGGASPNTMVP 61
VP+ AE+ + +GVY+PR L G L+ VRANT +A+ +P V VPV+GG + T++P
Sbjct: 201 VPIAAEVLKRKGVYDPRKLFGVTTLDVVRANTFVAEMKGLPLADVDVPVVGGHAAATILP 260
Query: 62 VLSAAVHPCTMTQEQIECVTSCIM-SGTEAVSCAKGCSTETASLSGAYAVARNTINVVKG 120
+LS A T E++E +T I +GTE V +A+LS AYA AR ++G
Sbjct: 261 LLSKARPKTAFTDEEVEALTRRIQNAGTEVVEAKAKAGGGSATLSMAYAAARFLEASLRG 320
Query: 121 LQGAKNIVQCAYVDSLGTCAPDCQFFASEVILGSSGVEK----NLGVPELTKFENCLLCN 176
L G ++ +C+YV P+ FFA V LG GVE+ + LT+FE L
Sbjct: 321 LDGDADVYECSYVQC--QAVPELPFFACRVKLGRDGVEEVAAAGAELRGLTEFEARALEA 378
Query: 177 CLPYVRNEIARAV 189
P ++ I + V
Sbjct: 379 LKPQLKKSIDKGV 391
>03_06_0127 -
31872840-31872912,31873021-31873115,31873199-31873288,
31873364-31873399,31874039-31874122,31874223-31874312,
31874426-31874740,31875674-31875883,31875965-31876036
Length = 354
Score = 113 bits (272), Expect = 2e-25
Identities = 65/170 (38%), Positives = 101/170 (59%), Gaps = 6/170 (3%)
Query: 2 VPLVAEIQRLRGVYNPRTLLGCVELNCVRANTVLADFLKVPPEAVRVPVIGGASPNTMVP 61
VP+ AE+ + G Y+P+ LLG L+ RANT +A+ L + P+ V VPV+GG + T++P
Sbjct: 166 VPIAAEVFKKAGTYDPKRLLGVTTLDVARANTFVAEVLGIDPKDVNVPVVGGHAGVTILP 225
Query: 62 VLSAAVHPCTMTQEQIECVTSCIMS-GTEAVSCAKGCSTETASLSGAYAVARNTINVVKG 120
+LS PC+ T ++I +T I + GTE V G +A+LS A+A A+ ++
Sbjct: 226 LLSQVHPPCSFTPDEISYLTKRIQNGGTEVVEAKAGAG--SATLSMAFAAAKFGDACLRA 283
Query: 121 LQGAKNIVQCAYVDSLGTCAPDCQFFASEVILGSSGVEKNLGVPELTKFE 170
++G +V+C+YV S T P FFA++V LG +G E+ L + L FE
Sbjct: 284 MRGDAGVVECSYVASAVTELP---FFATKVRLGRAGAEEVLPLGPLNDFE 330
>12_02_1221 -
27130321-27130491,27130616-27130664,27131120-27131188,
27131845-27131939,27132032-27132121,27132885-27132968,
27133122-27133211,27133310-27133624,27134184-27134399,
27134736-27134774,27135337-27135408
Length = 429
Score = 106 bits (255), Expect = 2e-23
Identities = 67/170 (39%), Positives = 98/170 (57%), Gaps = 18/170 (10%)
Query: 2 VPLVAEIQRLRGVYNPRTLLGCVELNCVRANTVLADFLKVPPEAVRVPVIGGASPNTMVP 61
VP+ AE+ + G Y+P+ LLG L+ VRANT +A+ L + P V VPVIGG + T++P
Sbjct: 181 VPIAAEVFKKAGTYDPKRLLGVTTLDVVRANTFVAEVLGLDPRDVNVPVIGGHAGVTILP 240
Query: 62 VLSAAVHPCTMTQEQIECVTSCIMS-GTEAVSCAKGCSTETASLSGAYAVARNTINVVKG 120
+LS PC+ T E+I +T+ I + GTE V AYA ++ ++G
Sbjct: 241 LLSQVNPPCSFTSEEISYLTTRIQNGGTEVVE--------------AYAASKFADACLRG 286
Query: 121 LQGAKNIVQCAYVDSLGTCAPDCQFFASEVILGSSGVEKNLGVPELTKFE 170
L+G IV+C++V S T P FFAS+V LG G+E+ L + L +FE
Sbjct: 287 LRGDAGIVECSFVASQVTELP---FFASKVRLGRCGIEEILSLGPLNEFE 333
>01_06_0072 +
26184592-26184828,26184934-26185107,26185591-26185759,
26185863-26185924,26186506-26186630,26186735-26186852,
26187760-26187897
Length = 340
Score = 104 bits (249), Expect = 1e-22
Identities = 67/172 (38%), Positives = 97/172 (56%), Gaps = 9/172 (5%)
Query: 2 VPLVAEIQRLRGVYNPRTLLGCVELNCVRANTVLADFLKVPPEAVRVPVIGGASPNTMVP 61
VP+ AE+ + G Y+ + L G L+ VRA T A VP V VPV+GG + T++P
Sbjct: 151 VPIAAEVFKKAGTYDEKKLFGVTTLDVVRAKTFYAGKANVPVTDVNVPVVGGHAGITILP 210
Query: 62 VLSAAVHPCT--MTQEQIECVTSCIM-SGTEAVSCAKGCSTETASLSGAYAVARNTINVV 118
+ S A P T ++ E I+ +T GTE V G + T S++ A AV N +
Sbjct: 211 LFSQAT-PATNALSDEDIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVFANA--CL 267
Query: 119 KGLQGAKNIVQCAYVDSLGTCAPDCQFFASEVILGSSGVEKNLGVPELTKFE 170
KGL G ++V+C++V S T P FFAS+V LG +GVE+ LG+ +L+ FE
Sbjct: 268 KGLNGVPDVVECSFVQSTVTELP---FFASKVKLGKNGVEEVLGLGQLSDFE 316
>08_02_0774 - 21047696-21048889
Length = 397
Score = 103 bits (248), Expect = 1e-22
Identities = 64/158 (40%), Positives = 91/158 (57%), Gaps = 6/158 (3%)
Query: 2 VPLVAEIQRLRGVYNPRTLLGCVELNCVRANTVLADFLKVPPEAVRVPVIGGASPNTMVP 61
VP+ AE+ + +GVYNP+ L G L+ VRANT +A + V VPV+GG + T++P
Sbjct: 199 VPIAAEVLKQKGVYNPKKLFGVTTLDVVRANTFVAQKKNLKLIDVDVPVVGGHAGITILP 258
Query: 62 VLSAAVHPCTMTQEQIECVTSCIM-SGTEAVSCAKGCSTETASLSGAYAVARNTINVVKG 120
+LS + T T E+ E +T I +GTE V G +A+LS AYA AR + ++
Sbjct: 259 LLSKTMPSVTFTDEETEQLTKRIQNAGTEVVEAKAGAG--SATLSMAYAAARFVESSLRA 316
Query: 121 LQGAKNIVQCAYVDSLGTCAPDCQFFASEVILGSSGVE 158
L G ++ +C +V S T P FFAS V LG +GVE
Sbjct: 317 LAGDPDVYECTFVQSELTELP---FFASRVKLGKNGVE 351
>05_07_0204 -
28397597-28397737,28398225-28398342,28399215-28399339,
28399683-28399744,28399867-28400035,28400594-28400767,
28400856-28401089
Length = 340
Score = 103 bits (248), Expect = 1e-22
Identities = 69/190 (36%), Positives = 104/190 (54%), Gaps = 7/190 (3%)
Query: 2 VPLVAEIQRLRGVYNPRTLLGCVELNCVRANTVLADFLKVPPEAVRVPVIGGASPNTMVP 61
VP+ AE+ + G Y+ + L G L+ VRA T A VP V VPV+GG + T++P
Sbjct: 150 VPIAAEVFKKAGTYDEKKLFGVTTLDVVRAKTFYAGKANVPVTEVNVPVVGGHAGITILP 209
Query: 62 VLSAAVHPC-TMTQEQIECVTSCIM-SGTEAVSCAKGCSTETASLSGAYAVARNTINVVK 119
+ S A ++ E I+ +T GTE V G +A+LS AYA A +K
Sbjct: 210 LFSQATPASNALSHEDIKALTKRTQDGGTEVVEAKAG--KGSATLSMAYAGAVFADACLK 267
Query: 120 GLQGAKNIVQCAYVDSLGTCAPDCQFFASEVILGSSGVEKNLGVPELTKFENCLLCNCLP 179
GL G ++V+C++V S T P FFAS+V LG +GVE+ LG+ +L++FE L N
Sbjct: 268 GLNGVPDVVECSFVQSTVTELP---FFASKVRLGKNGVEEVLGLGQLSEFEKEGLENLKG 324
Query: 180 YVRNEIARAV 189
+++ I + +
Sbjct: 325 ELKSSIEKGI 334
>01_06_1220 + 35493575-35494765
Length = 396
Score = 103 bits (248), Expect = 1e-22
Identities = 69/195 (35%), Positives = 107/195 (54%), Gaps = 8/195 (4%)
Query: 2 VPLVAEIQRLRGVYNPRTLLGCVELNCVRANTVLADFLKVPPEAVRVPVIGGASPNTMVP 61
VP+ AE+ + +GVYNP+ L G L+ VRANT +A + V VPV+GG + T++P
Sbjct: 199 VPIAAEVLKQKGVYNPKKLFGVTTLDVVRANTFIAQKKNLKLIDVDVPVVGGHAGITILP 258
Query: 62 VLSAAVHPCTMTQEQIECVTSCIM-SGTEAVSCAKGCSTETASLSGAYAVARNTINVVKG 120
+LS T T E+ E +T I +GTE V G +A+LS AYA AR + ++
Sbjct: 259 LLSKTRPSVTFTNEETEELTRRIQNAGTEVVEAKAGAG--SATLSMAYAAARFVESSLRA 316
Query: 121 LQGAKNIVQCAYVDSLGTCAPDCQFFASEVILGSSGVEKNLG--VPELTKFENCLLCNCL 178
L G ++ +C +V S T + FFAS V LG +GVE + + +T++E L +
Sbjct: 317 LAGDPDVYECTFVQSELT---ELLFFASRVKLGKNGVESIISSDLEGVTEYEAKALESLK 373
Query: 179 PYVRNEIARAVWLVY 193
P ++ I + + V+
Sbjct: 374 PELKASIEKGIEFVH 388
>06_03_1511 -
30669292-30669401,30669894-30669930,30670012-30670107,
30670186-30670281,30670679-30670828,30670956-30671100,
30671178-30671251,30671325-30671445,30671697-30671821,
30671898-30672047,30672249-30672324,30672496-30672557,
30672597-30672839,30673354-30673683,30673776-30673932,
30674008-30674139,30674219-30674277,30674734-30674798,
30674878-30675094,30675413-30675499,30675655-30675750,
30675938-30676003,30676096-30676287,30676380-30676532,
30676812-30677052,30677322-30677515,30678212-30678348,
30678474-30678480,30678708-30678830,30679370-30679427,
30680018-30680090,30680493-30681765
Length = 1714
Score = 30.7 bits (66), Expect = 1.6
Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 3/42 (7%)
Query: 211 CFTPPIVPCVPPSNWTC-DCPDACRDEYLASVCREMTCKCGT 251
C +PP+ VPP NW C +C ++ R+ + V R TC+ T
Sbjct: 285 CLSPPL-ESVPPGNWYCSECMNSDRNCF-GFVHRRKTCQVET 324
>06_01_1133 +
9364842-9364850,9364929-9365048,9365157-9365476,
9366267-9366428,9367151-9367235,9367352-9367501,
9367588-9367635,9367705-9367773,9367897-9368600,
9369426-9369561,9369636-9369856,9370355-9370486,
9371316-9371406,9371878-9371925,9372004-9372132,
9372357-9372626
Length = 897
Score = 29.5 bits (63), Expect = 3.6
Identities = 17/69 (24%), Positives = 23/69 (33%), Gaps = 5/69 (7%)
Query: 199 CCCSTCYAHPCTCFTPPIVPCVPPSNWTCDCPDACRDEYLASVCREMTCKCGTTELCWRP 258
C C + C C T C C CP C++ + C + C+
Sbjct: 651 CGCQSACGKQCPCLTNGT--CCEKY---CGCPKMCKNRFRGCHCAKSQCRSRQCPCFAAD 705
Query: 259 RESDYDAAR 267
RE D D R
Sbjct: 706 RECDPDVCR 714
>09_04_0363 + 16957949-16958361,16958524-16958527
Length = 138
Score = 29.1 bits (62), Expect = 4.7
Identities = 20/73 (27%), Positives = 30/73 (41%), Gaps = 3/73 (4%)
Query: 79 CVTSCIMSGTEAVS--CAKGCSTETASLSGAYAVARNTINVVKGLQGAKNIVQCAYVDSL 136
C C G+EA C+K + + + AVA +V + A A + L
Sbjct: 2 CTNGCGFFGSEATKNLCSKCYRDQLKEAASSAAVAAAAPDVANKEEEASTAAAAAD-EQL 60
Query: 137 GTCAPDCQFFASE 149
CA C FF+S+
Sbjct: 61 ALCASSCGFFSSK 73
>07_03_0481 -
18572206-18574314,18574591-18575185,18575304-18575371,
18577344-18577458,18578179-18578333,18578673-18580621,
18580691-18581372,18581550-18581621,18582558-18583199,
18583301-18583402,18585011-18585100
Length = 2192
Score = 29.1 bits (62), Expect = 4.7
Identities = 11/29 (37%), Positives = 14/29 (48%), Gaps = 2/29 (6%)
Query: 200 CCSTC-YAHPCTCFTPPIVPCVPPSNWTC 227
CC +C + C PP+ PP NW C
Sbjct: 46 CCDSCPRTYHLECLNPPLKRA-PPGNWQC 73
>04_03_0805 - 19850355-19850817,19851146-19851227,19852403-19852412
Length = 184
Score = 29.1 bits (62), Expect = 4.7
Identities = 9/23 (39%), Positives = 13/23 (56%)
Query: 200 CCSTCYAHPCTCFTPPIVPCVPP 222
C ++ PC C+ PP +P PP
Sbjct: 146 CGCPAWSSPCHCYPPPAMPPYPP 168
>03_05_1088 + 30301654-30303480
Length = 608
Score = 28.7 bits (61), Expect = 6.3
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 234 RDEYLASVCREMTCKCGTTELCWRPRESDYD 264
+D +LAS +M CKCG+ +L + E D
Sbjct: 396 QDSFLASALVDMYCKCGSIKLAYAVFEKAVD 426
>03_01_0021 + 186827-187243
Length = 138
Score = 28.7 bits (61), Expect = 6.3
Identities = 21/68 (30%), Positives = 30/68 (44%), Gaps = 3/68 (4%)
Query: 188 AVWLVYTMCQECCCSTCYAHPCTCFTPPIVPCV-PPSNWTCDCP-DACRDEYLASVCREM 245
A+ +++TM C + C TPP+ P PPS CP DA + A+V +
Sbjct: 14 ALNVLFTMQMGAVVQACEPY-CPTPTPPVTPPPSPPSGGGNKCPIDALKLSVCANVLNLL 72
Query: 246 TCKCGTTE 253
K G E
Sbjct: 73 KLKIGVPE 80
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.323 0.135 0.446
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,678,934
Number of Sequences: 37544
Number of extensions: 392443
Number of successful extensions: 1217
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1192
Number of HSP's gapped (non-prelim): 16
length of query: 309
length of database: 14,793,348
effective HSP length: 82
effective length of query: 227
effective length of database: 11,714,740
effective search space: 2659245980
effective search space used: 2659245980
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.5 bits)
S2: 60 (28.3 bits)
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