GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA005403-TA|BGIBMGA005403-PA|IPR001236|Lactate/malate
dehydrogenase, IPR010097|Malate dehydrogenase, NAD-dependent,
eukaryotes and gamma proteobacteria
         (309 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective...    23   3.4  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      23   4.5  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    22   7.8  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    22   7.8  

>AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective
           protein-1 protein.
          Length = 128

 Score = 23.0 bits (47), Expect = 3.4
 Identities = 12/41 (29%), Positives = 21/41 (51%), Gaps = 4/41 (9%)

Query: 223 SNWTCDCPDACRD-EY---LASVCREMTCKCGTTELCWRPR 259
           +++   C D+C   +Y   ++S C  + C  G  ELC  P+
Sbjct: 33  TSYCLGCGDSCHKCKYGIAMSSACGIVQCAKGPDELCGGPQ 73


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 22.6 bits (46), Expect = 4.5
 Identities = 9/37 (24%), Positives = 14/37 (37%)

Query: 249 CGTTELCWRPRESDYDAARAANLTHQMPLKGCACSEC 285
           C T ++C +   +     R     H  PL    C+ C
Sbjct: 371 CYTCDVCGKTLSTKLTLKRHKEQQHFQPLNSAVCALC 407


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 21.8 bits (44), Expect = 7.8
 Identities = 10/30 (33%), Positives = 15/30 (50%)

Query: 149 EVILGSSGVEKNLGVPELTKFENCLLCNCL 178
           E ILG + V +N  + +  K  N   C C+
Sbjct: 583 EEILGEAKVLQNFDIKDKNKKVNVAGCRCV 612


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.8 bits (44), Expect = 7.8
 Identities = 11/30 (36%), Positives = 16/30 (53%)

Query: 102 ASLSGAYAVARNTINVVKGLQGAKNIVQCA 131
           AS S A   A  T    +  QG++ ++QCA
Sbjct: 743 ASPSPAEQCASTTTITARSPQGSQGLLQCA 772


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.323    0.135    0.446 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 92,760
Number of Sequences: 429
Number of extensions: 3887
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 4
Number of HSP's gapped (non-prelim): 4
length of query: 309
length of database: 140,377
effective HSP length: 58
effective length of query: 251
effective length of database: 115,495
effective search space: 28989245
effective search space used: 28989245
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.5 bits)
S2: 44 (21.8 bits)