GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA005398-TA|BGIBMGA005398-PA|undefined
         (101 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     25   0.14 
AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    24   0.31 
DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase doma...    23   0.96 
AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.                22   1.3  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    21   2.9  
DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    20   5.1  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    20   6.8  

>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 25.4 bits (53), Expect = 0.14
 Identities = 12/27 (44%), Positives = 16/27 (59%), Gaps = 1/27 (3%)

Query: 6   TIYEITQERNNIVPYVFWIGDLNFRTD 32
           T+     ++ + VPY F  GD NFRTD
Sbjct: 209 TLDRFHNDKYSNVPY-FLFGDFNFRTD 234


>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 24.2 bits (50), Expect = 0.31
 Identities = 15/65 (23%), Positives = 27/65 (41%), Gaps = 1/65 (1%)

Query: 35  TGSSPTSEEIVAKLQKVEKDKYAALLKHDQLLAVMDAGEAFSEFSEADIKFPPTY-KFVI 93
           TG+      +V  +  V    Y A  K D L+   ++ E+F   +     + P Y K + 
Sbjct: 184 TGNGGLVSLVVQAMDPVNTIVYMADDKGDALIVYQNSDESFHRLTSNTFDYDPKYIKMMD 243

Query: 94  GGDDY 98
            G+ +
Sbjct: 244 AGESF 248


>DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase domain
           protein protein.
          Length = 448

 Score = 22.6 bits (46), Expect = 0.96
 Identities = 17/72 (23%), Positives = 30/72 (41%), Gaps = 4/72 (5%)

Query: 31  TDHPTGSSPTSEEIVAKLQKVEKDKYAALLKHDQLLAVMDAGEAFSEFSEA----DIKFP 86
           +D    S   S E+  ++Q+ E +    + + D + A   A   +   +      D++FP
Sbjct: 317 SDKQIASVVKSSELAVRIQRQENNIRPMVKQIDTVAAEWPATTNYLYLTYNGTVHDVEFP 376

Query: 87  PTYKFVIGGDDY 98
             Y  VIG   Y
Sbjct: 377 GXYTMVIGSGVY 388


>AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.
          Length = 316

 Score = 22.2 bits (45), Expect = 1.3
 Identities = 11/35 (31%), Positives = 21/35 (60%), Gaps = 7/35 (20%)

Query: 42  EEIVAKLQKVEK-------DKYAALLKHDQLLAVM 69
           E++ AK+ + EK       +K+A+ LKH  ++ V+
Sbjct: 89  EQVAAKIIQTEKYSNMLNSEKHASFLKHSNIVKVL 123


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated
          chloride channel protein.
          Length = 428

 Score = 21.0 bits (42), Expect = 2.9
 Identities = 13/52 (25%), Positives = 25/52 (48%)

Query: 39 PTSEEIVAKLQKVEKDKYAALLKHDQLLAVMDAGEAFSEFSEADIKFPPTYK 90
          P   ++  K++  +KD  A ++     +  +D+ +  S    ADI F  T+K
Sbjct: 42 PEDPKLYDKMRPPKKDGQATVVYFHVTVMGLDSIDENSMTYAADIFFAQTWK 93


>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 20.2 bits (40), Expect = 5.1
 Identities = 8/16 (50%), Positives = 10/16 (62%)

Query: 85  FPPTYKFVIGGDDYDL 100
           +PP   F I GD +DL
Sbjct: 229 YPPYGTFNIKGDTFDL 244


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 19.8 bits (39), Expect = 6.8
 Identities = 6/10 (60%), Positives = 9/10 (90%)

Query: 26  DLNFRTDHPT 35
           +L+F TDHP+
Sbjct: 203 ELHFTTDHPS 212


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.316    0.136    0.398 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 32,071
Number of Sequences: 429
Number of extensions: 1191
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of query: 101
length of database: 140,377
effective HSP length: 49
effective length of query: 52
effective length of database: 119,356
effective search space:  6206512
effective search space used:  6206512
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.2 bits)
S2: 38 (19.4 bits)