GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA005397-TA|BGIBMGA005397-PA|IPR000618|Insect cuticle
protein
         (107 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|ch...    24   5.9  
SPBC543.03c |pku80||Ku domain protein Pku80|Schizosaccharomyces ...    23   7.8  

>SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1822

 Score = 23.8 bits (49), Expect = 5.9
 Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 3/50 (6%)

Query: 17  SVRQSIAAPALQEEQYPPMPYEYKY---DVEDPEKTLYFGANEVGDAEGK 63
           +   S  +PA QE +  P   E KY   D++D +K+    A  V DA  +
Sbjct: 74  NTEDSSLSPAKQENEKSPEGIEQKYQEEDLKDDKKSNETIATPVPDAASR 123


>SPBC543.03c |pku80||Ku domain protein Pku80|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 695

 Score = 23.4 bits (48), Expect = 7.8
 Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 3/39 (7%)

Query: 65  VGGYRVL--LPDGRLMTVEYTVQGDSGFVPKISFDSNAN 101
           + GY +L  +P   L  + YT+   +  VPK  F+S  N
Sbjct: 341 IPGYEILGFIPKSSL-PIYYTISDTNIIVPKDDFESKLN 378


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.313    0.135    0.400 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 485,961
Number of Sequences: 5004
Number of extensions: 17634
Number of successful extensions: 23
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 22
Number of HSP's gapped (non-prelim): 2
length of query: 107
length of database: 2,362,478
effective HSP length: 64
effective length of query: 43
effective length of database: 2,042,222
effective search space: 87815546
effective search space used: 87815546
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 48 (23.4 bits)