GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA005397-TA|BGIBMGA005397-PA|IPR000618|Insect cuticle
protein
         (107 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.              21   2.4  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   2.4  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   2.4  
DQ325087-1|ABD14101.1|  179|Apis mellifera complementary sex det...    21   3.2  
DQ325086-1|ABD14100.1|  179|Apis mellifera complementary sex det...    21   3.2  
DQ325085-1|ABD14099.1|  179|Apis mellifera complementary sex det...    21   3.2  
DQ325084-1|ABD14098.1|  179|Apis mellifera complementary sex det...    21   3.2  
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      20   5.6  
DQ325082-1|ABD14096.1|  179|Apis mellifera complementary sex det...    19   9.8  
AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    19   9.8  

>DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.
          Length = 120

 Score = 21.4 bits (43), Expect = 2.4
 Identities = 9/31 (29%), Positives = 18/31 (58%)

Query: 34 PMPYEYKYDVEDPEKTLYFGANEVGDAEGKV 64
          P+P E  +   + E+  Y+  + + DA+G+V
Sbjct: 35 PLPTECVFCRNNGEEEAYYRKHLLKDADGRV 65


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.4 bits (43), Expect = 2.4
 Identities = 8/19 (42%), Positives = 12/19 (63%)

Query: 71  LLPDGRLMTVEYTVQGDSG 89
           +LPDG L+      +GD+G
Sbjct: 567 VLPDGTLVITSVQKKGDAG 585


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.4 bits (43), Expect = 2.4
 Identities = 8/19 (42%), Positives = 12/19 (63%)

Query: 71  LLPDGRLMTVEYTVQGDSG 89
           +LPDG L+      +GD+G
Sbjct: 567 VLPDGTLVITSVQKKGDAG 585


>DQ325087-1|ABD14101.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.0 bits (42), Expect = 3.2
 Identities = 7/21 (33%), Positives = 12/21 (57%)

Query: 37  YEYKYDVEDPEKTLYFGANEV 57
           Y+Y Y+  +  K LY+  N +
Sbjct: 95  YKYNYNNNNYNKKLYYNINYI 115


>DQ325086-1|ABD14100.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.0 bits (42), Expect = 3.2
 Identities = 7/21 (33%), Positives = 12/21 (57%)

Query: 37  YEYKYDVEDPEKTLYFGANEV 57
           Y+Y Y+  +  K LY+  N +
Sbjct: 95  YKYNYNNNNYNKKLYYNINYI 115


>DQ325085-1|ABD14099.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.0 bits (42), Expect = 3.2
 Identities = 7/21 (33%), Positives = 12/21 (57%)

Query: 37  YEYKYDVEDPEKTLYFGANEV 57
           Y+Y Y+  +  K LY+  N +
Sbjct: 95  YKYNYNNNNYNKKLYYNINYI 115


>DQ325084-1|ABD14098.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.0 bits (42), Expect = 3.2
 Identities = 7/21 (33%), Positives = 12/21 (57%)

Query: 37  YEYKYDVEDPEKTLYFGANEV 57
           Y+Y Y+  +  K LY+  N +
Sbjct: 95  YKYNYNNNNYNKKLYYNINYI 115


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 20.2 bits (40), Expect = 5.6
 Identities = 8/15 (53%), Positives = 10/15 (66%)

Query: 31  QYPPMPYEYKYDVED 45
           +Y P   EYK DVE+
Sbjct: 171 EYKPEIMEYKPDVEE 185


>DQ325082-1|ABD14096.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 19.4 bits (38), Expect = 9.8
 Identities = 7/19 (36%), Positives = 11/19 (57%)

Query: 39  YKYDVEDPEKTLYFGANEV 57
           YKY+  +  K LY+  N +
Sbjct: 96  YKYNYNNNCKKLYYNINYI 114


>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 19.4 bits (38), Expect = 9.8
 Identities = 7/16 (43%), Positives = 11/16 (68%)

Query: 45  DPEKTLYFGANEVGDA 60
           DP  T+ + A++ GDA
Sbjct: 198 DPVNTIVYMADDKGDA 213


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.313    0.135    0.400 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 31,338
Number of Sequences: 429
Number of extensions: 1270
Number of successful extensions: 10
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of query: 107
length of database: 140,377
effective HSP length: 50
effective length of query: 57
effective length of database: 118,927
effective search space:  6778839
effective search space used:  6778839
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.0 bits)
S2: 38 (19.4 bits)