Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA005395-TA|BGIBMGA005395-PA|IPR001159|Double-stranded RNA
binding
(356 letters)
Database: human
224,733 sequences; 73,234,838 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AK223107-1|BAD96827.1| 313|Homo sapiens protein kinase, interfe... 165 3e-40
CR533525-1|CAG38556.1| 313|Homo sapiens PRKRA protein. 163 8e-40
BT007243-1|AAP35907.1| 313|Homo sapiens protein kinase, interfe... 163 8e-40
BC009470-1|AAH09470.1| 313|Homo sapiens protein kinase, interfe... 163 8e-40
AF083033-1|AAD33099.1| 313|Homo sapiens PKR-associating protein... 163 8e-40
AF072860-1|AAC25672.1| 313|Homo sapiens protein activator of th... 163 8e-40
AC009948-2|AAX88882.1| 313|Homo sapiens unknown protein. 163 8e-40
BT007140-1|AAP35804.1| 366|Homo sapiens TAR (HIV) RNA binding p... 140 9e-33
BC005860-1|AAH05860.1| 366|Homo sapiens Tar (HIV-1) RNA binding... 140 9e-33
M60801-1|AAA36765.1| 345|Homo sapiens TAR RNA binding protein p... 138 2e-32
U08998-1|AAB50581.2| 366|Homo sapiens TAR RNA binding protein 2... 137 5e-32
AL133174-4|CAI42819.1| 494|Homo sapiens staufen, RNA binding pr... 55 3e-07
AF281068-2|AAL55730.1| 53|Homo sapiens TAR RNA-binding protein... 54 8e-07
AF281068-1|AAL55731.1| 74|Homo sapiens TAR RNA-binding protein... 54 8e-07
BC095397-1|AAH95397.1| 496|Homo sapiens staufen, RNA binding pr... 50 9e-06
BC050432-1|AAH50432.1| 577|Homo sapiens staufen, RNA binding pr... 50 9e-06
AL133174-8|CAC14085.1| 577|Homo sapiens staufen, RNA binding pr... 50 9e-06
AL133174-3|CAC14084.1| 496|Homo sapiens staufen, RNA binding pr... 50 9e-06
AB209561-1|BAD92798.1| 591|Homo sapiens staufen isoform b varia... 50 9e-06
AJ132258-1|CAB40082.1| 496|Homo sapiens staufen protein protein. 50 1e-05
AF061941-1|AAD17533.1| 496|Homo sapiens staufen protein protein. 50 1e-05
AF061940-1|AAD17532.1| 496|Homo sapiens staufen protein protein. 50 1e-05
AF061939-1|AAD17531.1| 577|Homo sapiens staufen protein protein. 50 1e-05
AF061938-1|AAD17530.1| 496|Homo sapiens staufen protein protein. 50 1e-05
AK002152-1|BAA92111.1| 570|Homo sapiens protein ( Homo sapiens ... 48 5e-05
AF459097-1|AAN37926.1| 570|Homo sapiens double-stranded RNA-bin... 48 5e-05
Y19062-1|CAB64341.1| 479|Homo sapiens 39k3 protein protein. 46 2e-04
BC110447-1|AAI10448.1| 479|Homo sapiens staufen, RNA binding pr... 46 2e-04
BC008369-1|AAH08369.1| 538|Homo sapiens STAU2 protein protein. 46 2e-04
AF459098-1|AAN37927.1| 538|Homo sapiens double-stranded RNA-bin... 46 2e-04
AB210014-1|BAE06096.1| 490|Homo sapiens STAU2 variant protein p... 46 2e-04
AY546099-1|AAS76637.1| 502|Homo sapiens staufen protein T4 vari... 43 0.002
AY529074-1|AAS76636.1| 502|Homo sapiens staufen protein T5 vari... 43 0.002
AL133174-5|CAI42820.1| 502|Homo sapiens staufen, RNA binding pr... 43 0.002
U75503-3|AAB97117.1| 1181|Homo sapiens RNA adenosine deaminase p... 36 0.16
X98559-2|CAA67169.1| 931|Homo sapiens dsRNA adenosine deaminase... 35 0.38
X98559-1|CAA67170.1| 1221|Homo sapiens dsRNA adenosine deaminase... 35 0.38
X79449-1|CAA55968.1| 1226|Homo sapiens IFI-4 protein. 35 0.38
X79448-1|CAA55967.1| 931|Homo sapiens IFI-4 protein. 35 0.38
U75503-2|AAB97116.1| 1200|Homo sapiens RNA adenosine deaminase p... 35 0.38
U75503-1|AAB97118.1| 1226|Homo sapiens RNA adenosine deaminase p... 35 0.38
U18121-1|AAC13782.1| 1226|Homo sapiens p136 protein. 35 0.38
U10439-1|AAB06697.1| 1226|Homo sapiens double-stranded RNA adeno... 35 0.38
BX640741-1|CAE45853.1| 1278|Homo sapiens hypothetical protein pr... 35 0.38
BX538232-1|CAD98075.1| 1257|Homo sapiens hypothetical protein pr... 35 0.38
BC038227-1|AAH38227.1| 1226|Homo sapiens adenosine deaminase, RN... 35 0.38
AL691488-2|CAI17376.1| 1226|Homo sapiens adenosine deaminase, RN... 35 0.38
AL691488-1|CAI17375.1| 931|Homo sapiens adenosine deaminase, RN... 35 0.38
AL606500-2|CAH71908.1| 1226|Homo sapiens adenosine deaminase, RN... 35 0.38
AL606500-1|CAH71907.1| 931|Homo sapiens adenosine deaminase, RN... 35 0.38
AL592078-4|CAI16185.1| 1226|Homo sapiens adenosine deaminase, RN... 35 0.38
AL592078-2|CAI16183.1| 931|Homo sapiens adenosine deaminase, RN... 35 0.38
AB209891-1|BAD93128.1| 1244|Homo sapiens adenosine deaminase, RN... 35 0.38
X63753-1|CAA45282.1| 1523|Homo sapiens son-a protein. 33 1.5
BC017732-1|AAH17732.1| 672|Homo sapiens spermatid perinuclear R... 32 3.5
BC002693-1|AAH02693.2| 615|Homo sapiens STRBP protein protein. 32 3.5
AL365338-5|CAH70300.1| 672|Homo sapiens spermatid perinuclear R... 32 3.5
AL365338-4|CAH70299.1| 658|Homo sapiens spermatid perinuclear R... 32 3.5
AK027890-1|BAB55434.1| 672|Homo sapiens protein ( Homo sapiens ... 32 3.5
AK024285-1|BAB14873.1| 405|Homo sapiens protein ( Homo sapiens ... 32 3.5
AK002169-1|BAA92120.1| 490|Homo sapiens spermatid perinuclear R... 32 3.5
AF380182-1|AAL34500.1| 147|Homo sapiens SON DNA binding protein... 32 3.5
AF380179-1|AAL34497.1| 2140|Homo sapiens SON DNA binding protein... 32 3.5
AF333337-1|AAK20832.1| 673|Homo sapiens spermatid perinuclear R... 32 3.5
BC010169-1|AAH10169.1| 196|Homo sapiens STAU1 protein protein. 31 6.2
AL133174-6|CAI42821.1| 199|Homo sapiens staufen, RNA binding pr... 31 6.2
AK023314-1|BAB14522.1| 206|Homo sapiens protein ( Homo sapiens ... 31 6.2
AK001576-1|BAA91766.1| 206|Homo sapiens protein ( Homo sapiens ... 31 6.2
>AK223107-1|BAD96827.1| 313|Homo sapiens protein kinase,
interferon-inducible double stranded RNA dependent
activator va protein.
Length = 313
Score = 165 bits (400), Expect = 3e-40
Identities = 105/310 (33%), Positives = 153/310 (49%), Gaps = 28/310 (9%)
Query: 47 PTKTPVSVLQELLARRGTVPKYELVQIEGMIHEPTFRYRVTVADLVAMGTGRXXXXXXXX 106
P KTP+ VL E + +P YE + + IH PTF +RVTV D+ G G
Sbjct: 31 PGKTPIQVLHEYGMKTKNIPVYECERSDVQIHVPTFTFRVTVGDITCTGEGTSKKLAKHR 90
Query: 107 XXXXLLDKLTGATPADQTTNGNVPETGAVVPTFEDKLMGNPVGWLQELCMSRFWPPPSYH 166
++ L A+ + VP+ P+ + K NP+G LQEL + W P Y
Sbjct: 91 AAEAAINILK----ANASICFAVPDPLMPDPSKQPKNQLNPIGSLQELAIHHGWRLPEYT 146
Query: 167 AENDDNVNRRLPHERHFTIICTLLKRREVGTGKSKKLAKRQAAYKMWQALQDNPPESFQN 226
+ H+R +T IC L E G G SKK AKR AA K
Sbjct: 147 LSQEGGP----AHKREYTTICRLESFMETGKGASKKQAKRNAAEKF-------------- 188
Query: 227 DDEGGVAARYADLKDSKISTLTTSHSHKVSQFHKHLKQSVGPNLAKLQVTPLNNKDFNFV 286
A+++++ +LT H + L+ S G + L+ + L+ + +++
Sbjct: 189 ------LAKFSNISPENHISLTNVVGHSLGCTWHSLRNSPGEKINLLKRSLLSIPNTDYI 242
Query: 287 QFLQEIASEQSFEVTYVDIEEKSMTGLCQCLVQLSTLPVAVCHGAGLTSKDAQSSAAQNA 346
Q L EIA EQ F +TY+DI+E S G QCL +LST P+AVCHG+G++ +AQS AA NA
Sbjct: 243 QLLSEIAKEQGFNITYLDIDELSANGQYQCLAELSTSPIAVCHGSGISCGNAQSDAAHNA 302
Query: 347 LEYLKIMTKK 356
L+YLKI+ ++
Sbjct: 303 LQYLKIIAER 312
>CR533525-1|CAG38556.1| 313|Homo sapiens PRKRA protein.
Length = 313
Score = 163 bits (396), Expect = 8e-40
Identities = 104/310 (33%), Positives = 152/310 (49%), Gaps = 28/310 (9%)
Query: 47 PTKTPVSVLQELLARRGTVPKYELVQIEGMIHEPTFRYRVTVADLVAMGTGRXXXXXXXX 106
P KTP+ VL E + +P YE + + IH PTF +RVTV D+ G G
Sbjct: 31 PGKTPIQVLHEYGMKTKNIPVYECERSDVQIHVPTFTFRVTVGDITCTGEGTSKKLAKHR 90
Query: 107 XXXXLLDKLTGATPADQTTNGNVPETGAVVPTFEDKLMGNPVGWLQELCMSRFWPPPSYH 166
++ L A+ + VP+ P+ + K NP+G LQEL + W P Y
Sbjct: 91 AAEAAINILK----ANASICFAVPDPLMPDPSKQPKNQLNPIGSLQELAIHHGWRLPEYT 146
Query: 167 AENDDNVNRRLPHERHFTIICTLLKRREVGTGKSKKLAKRQAAYKMWQALQDNPPESFQN 226
+ H+R +T IC L E G G SKK AKR AA K
Sbjct: 147 LSQEGGP----AHKREYTTICRLESFMETGKGASKKQAKRNAAEKF-------------- 188
Query: 227 DDEGGVAARYADLKDSKISTLTTSHSHKVSQFHKHLKQSVGPNLAKLQVTPLNNKDFNFV 286
A+++++ +LT H + L+ S G + L+ + L+ + +++
Sbjct: 189 ------LAKFSNISPENHISLTNVVGHSLGCTWHSLRNSPGEKINLLKRSLLSIPNTDYI 242
Query: 287 QFLQEIASEQSFEVTYVDIEEKSMTGLCQCLVQLSTLPVAVCHGAGLTSKDAQSSAAQNA 346
Q L EIA EQ F +TY+DI+E S G QCL +LST P+ VCHG+G++ +AQS AA NA
Sbjct: 243 QLLSEIAKEQGFNITYLDIDELSANGQYQCLAELSTSPITVCHGSGISCGNAQSDAAHNA 302
Query: 347 LEYLKIMTKK 356
L+YLKI+ ++
Sbjct: 303 LQYLKIIAER 312
>BT007243-1|AAP35907.1| 313|Homo sapiens protein kinase,
interferon-inducible double stranded RNA dependent
activator protein.
Length = 313
Score = 163 bits (396), Expect = 8e-40
Identities = 104/310 (33%), Positives = 152/310 (49%), Gaps = 28/310 (9%)
Query: 47 PTKTPVSVLQELLARRGTVPKYELVQIEGMIHEPTFRYRVTVADLVAMGTGRXXXXXXXX 106
P KTP+ VL E + +P YE + + IH PTF +RVTV D+ G G
Sbjct: 31 PGKTPIQVLHEYGMKTKNIPVYECERSDVQIHVPTFTFRVTVGDITCTGEGTSKKLAKHR 90
Query: 107 XXXXLLDKLTGATPADQTTNGNVPETGAVVPTFEDKLMGNPVGWLQELCMSRFWPPPSYH 166
++ L A+ + VP+ P+ + K NP+G LQEL + W P Y
Sbjct: 91 AAEAAINILK----ANASICFAVPDPLMPDPSKQPKNQLNPIGSLQELAIHHGWRLPEYT 146
Query: 167 AENDDNVNRRLPHERHFTIICTLLKRREVGTGKSKKLAKRQAAYKMWQALQDNPPESFQN 226
+ H+R +T IC L E G G SKK AKR AA K
Sbjct: 147 LSQEGGP----AHKREYTTICRLESFMETGKGASKKQAKRNAAEKF-------------- 188
Query: 227 DDEGGVAARYADLKDSKISTLTTSHSHKVSQFHKHLKQSVGPNLAKLQVTPLNNKDFNFV 286
A+++++ +LT H + L+ S G + L+ + L+ + +++
Sbjct: 189 ------LAKFSNISPENHISLTNVVGHSLGCTWHSLRNSPGEKINLLKRSLLSIPNTDYI 242
Query: 287 QFLQEIASEQSFEVTYVDIEEKSMTGLCQCLVQLSTLPVAVCHGAGLTSKDAQSSAAQNA 346
Q L EIA EQ F +TY+DI+E S G QCL +LST P+ VCHG+G++ +AQS AA NA
Sbjct: 243 QLLSEIAKEQGFNITYLDIDELSANGQYQCLAELSTSPITVCHGSGISCGNAQSDAAHNA 302
Query: 347 LEYLKIMTKK 356
L+YLKI+ ++
Sbjct: 303 LQYLKIIAER 312
>BC009470-1|AAH09470.1| 313|Homo sapiens protein kinase,
interferon-inducible double stranded RNA dependent
activator protein.
Length = 313
Score = 163 bits (396), Expect = 8e-40
Identities = 104/310 (33%), Positives = 152/310 (49%), Gaps = 28/310 (9%)
Query: 47 PTKTPVSVLQELLARRGTVPKYELVQIEGMIHEPTFRYRVTVADLVAMGTGRXXXXXXXX 106
P KTP+ VL E + +P YE + + IH PTF +RVTV D+ G G
Sbjct: 31 PGKTPIQVLHEYGMKTKNIPVYECERSDVQIHVPTFTFRVTVGDITCTGEGTSKKLAKHR 90
Query: 107 XXXXLLDKLTGATPADQTTNGNVPETGAVVPTFEDKLMGNPVGWLQELCMSRFWPPPSYH 166
++ L A+ + VP+ P+ + K NP+G LQEL + W P Y
Sbjct: 91 AAEAAINILK----ANASICFAVPDPLMPDPSKQPKNQLNPIGSLQELAIHHGWRLPEYT 146
Query: 167 AENDDNVNRRLPHERHFTIICTLLKRREVGTGKSKKLAKRQAAYKMWQALQDNPPESFQN 226
+ H+R +T IC L E G G SKK AKR AA K
Sbjct: 147 LSQEGGP----AHKREYTTICRLESFMETGKGASKKQAKRNAAEKF-------------- 188
Query: 227 DDEGGVAARYADLKDSKISTLTTSHSHKVSQFHKHLKQSVGPNLAKLQVTPLNNKDFNFV 286
A+++++ +LT H + L+ S G + L+ + L+ + +++
Sbjct: 189 ------LAKFSNISPENHISLTNVVGHSLGCTWHSLRNSPGEKINLLKRSLLSIPNTDYI 242
Query: 287 QFLQEIASEQSFEVTYVDIEEKSMTGLCQCLVQLSTLPVAVCHGAGLTSKDAQSSAAQNA 346
Q L EIA EQ F +TY+DI+E S G QCL +LST P+ VCHG+G++ +AQS AA NA
Sbjct: 243 QLLSEIAKEQGFNITYLDIDELSANGQYQCLAELSTSPITVCHGSGISCGNAQSDAAHNA 302
Query: 347 LEYLKIMTKK 356
L+YLKI+ ++
Sbjct: 303 LQYLKIIAER 312
>AF083033-1|AAD33099.1| 313|Homo sapiens PKR-associating protein
RAX protein.
Length = 313
Score = 163 bits (396), Expect = 8e-40
Identities = 104/310 (33%), Positives = 152/310 (49%), Gaps = 28/310 (9%)
Query: 47 PTKTPVSVLQELLARRGTVPKYELVQIEGMIHEPTFRYRVTVADLVAMGTGRXXXXXXXX 106
P KTP+ VL E + +P YE + + IH PTF +RVTV D+ G G
Sbjct: 31 PGKTPIQVLHEYGMKTKNIPVYECERSDVQIHVPTFTFRVTVGDITCTGEGTSKKLAKHR 90
Query: 107 XXXXLLDKLTGATPADQTTNGNVPETGAVVPTFEDKLMGNPVGWLQELCMSRFWPPPSYH 166
++ L A+ + VP+ P+ + K NP+G LQEL + W P Y
Sbjct: 91 AAEAAINILK----ANASICFAVPDPLMPDPSKQPKNQLNPIGSLQELAIHHGWRLPEYT 146
Query: 167 AENDDNVNRRLPHERHFTIICTLLKRREVGTGKSKKLAKRQAAYKMWQALQDNPPESFQN 226
+ H+R +T IC L E G G SKK AKR AA K
Sbjct: 147 LSQEGGP----AHKREYTTICRLESFMETGKGASKKQAKRNAAEKF-------------- 188
Query: 227 DDEGGVAARYADLKDSKISTLTTSHSHKVSQFHKHLKQSVGPNLAKLQVTPLNNKDFNFV 286
A+++++ +LT H + L+ S G + L+ + L+ + +++
Sbjct: 189 ------LAKFSNISPENHISLTNVVGHSLGCTWHSLRNSPGEKINLLKRSLLSIPNTDYI 242
Query: 287 QFLQEIASEQSFEVTYVDIEEKSMTGLCQCLVQLSTLPVAVCHGAGLTSKDAQSSAAQNA 346
Q L EIA EQ F +TY+DI+E S G QCL +LST P+ VCHG+G++ +AQS AA NA
Sbjct: 243 QLLSEIAKEQGFNITYLDIDELSANGQYQCLAELSTSPITVCHGSGISCGNAQSDAAHNA 302
Query: 347 LEYLKIMTKK 356
L+YLKI+ ++
Sbjct: 303 LQYLKIIAER 312
>AF072860-1|AAC25672.1| 313|Homo sapiens protein activator of the
interferon-induced protein kinase protein.
Length = 313
Score = 163 bits (396), Expect = 8e-40
Identities = 104/310 (33%), Positives = 152/310 (49%), Gaps = 28/310 (9%)
Query: 47 PTKTPVSVLQELLARRGTVPKYELVQIEGMIHEPTFRYRVTVADLVAMGTGRXXXXXXXX 106
P KTP+ VL E + +P YE + + IH PTF +RVTV D+ G G
Sbjct: 31 PGKTPIQVLHEYGMKTKNIPVYECERSDVQIHVPTFTFRVTVGDITCTGEGTSKKLAKHR 90
Query: 107 XXXXLLDKLTGATPADQTTNGNVPETGAVVPTFEDKLMGNPVGWLQELCMSRFWPPPSYH 166
++ L A+ + VP+ P+ + K NP+G LQEL + W P Y
Sbjct: 91 AAEAAINILK----ANASICFAVPDPLMPDPSKQPKNQLNPIGSLQELAIHHGWRLPEYT 146
Query: 167 AENDDNVNRRLPHERHFTIICTLLKRREVGTGKSKKLAKRQAAYKMWQALQDNPPESFQN 226
+ H+R +T IC L E G G SKK AKR AA K
Sbjct: 147 LSQEGGP----AHKREYTTICRLESFMETGKGASKKQAKRNAAEKF-------------- 188
Query: 227 DDEGGVAARYADLKDSKISTLTTSHSHKVSQFHKHLKQSVGPNLAKLQVTPLNNKDFNFV 286
A+++++ +LT H + L+ S G + L+ + L+ + +++
Sbjct: 189 ------LAKFSNISPENHISLTNVVGHSLGCTWHSLRNSPGEKINLLKRSLLSIPNTDYI 242
Query: 287 QFLQEIASEQSFEVTYVDIEEKSMTGLCQCLVQLSTLPVAVCHGAGLTSKDAQSSAAQNA 346
Q L EIA EQ F +TY+DI+E S G QCL +LST P+ VCHG+G++ +AQS AA NA
Sbjct: 243 QLLSEIAKEQGFNITYLDIDELSANGQYQCLAELSTSPITVCHGSGISCGNAQSDAAHNA 302
Query: 347 LEYLKIMTKK 356
L+YLKI+ ++
Sbjct: 303 LQYLKIIAER 312
>AC009948-2|AAX88882.1| 313|Homo sapiens unknown protein.
Length = 313
Score = 163 bits (396), Expect = 8e-40
Identities = 104/310 (33%), Positives = 152/310 (49%), Gaps = 28/310 (9%)
Query: 47 PTKTPVSVLQELLARRGTVPKYELVQIEGMIHEPTFRYRVTVADLVAMGTGRXXXXXXXX 106
P KTP+ VL E + +P YE + + IH PTF +RVTV D+ G G
Sbjct: 31 PGKTPIQVLHEYGMKTKNIPVYECERSDVQIHVPTFTFRVTVGDITCTGEGTSKKLAKHR 90
Query: 107 XXXXLLDKLTGATPADQTTNGNVPETGAVVPTFEDKLMGNPVGWLQELCMSRFWPPPSYH 166
++ L A+ + VP+ P+ + K NP+G LQEL + W P Y
Sbjct: 91 AAEAAINILK----ANASICFAVPDPLMPDPSKQPKNQLNPIGSLQELAIHHGWRLPEYT 146
Query: 167 AENDDNVNRRLPHERHFTIICTLLKRREVGTGKSKKLAKRQAAYKMWQALQDNPPESFQN 226
+ H+R +T IC L E G G SKK AKR AA K
Sbjct: 147 LSQEGGP----AHKREYTTICRLESFMETGKGASKKQAKRNAAEKF-------------- 188
Query: 227 DDEGGVAARYADLKDSKISTLTTSHSHKVSQFHKHLKQSVGPNLAKLQVTPLNNKDFNFV 286
A+++++ +LT H + L+ S G + L+ + L+ + +++
Sbjct: 189 ------LAKFSNISPENHISLTNVVGHSLGCTWHSLRNSPGEKINLLKRSLLSIPNTDYI 242
Query: 287 QFLQEIASEQSFEVTYVDIEEKSMTGLCQCLVQLSTLPVAVCHGAGLTSKDAQSSAAQNA 346
Q L EIA EQ F +TY+DI+E S G QCL +LST P+ VCHG+G++ +AQS AA NA
Sbjct: 243 QLLSEIAKEQGFNITYLDIDELSANGQYQCLAELSTSPITVCHGSGISCGNAQSDAAHNA 302
Query: 347 LEYLKIMTKK 356
L+YLKI+ ++
Sbjct: 303 LQYLKIIAER 312
>BT007140-1|AAP35804.1| 366|Homo sapiens TAR (HIV) RNA binding
protein 2 protein.
Length = 366
Score = 140 bits (338), Expect = 9e-33
Identities = 108/339 (31%), Positives = 157/339 (46%), Gaps = 35/339 (10%)
Query: 47 PTKTPVSVLQELLARRGTVPKYELVQIEGMIHEPTFRYRVTVADLVAMGTGRXXXXXXXX 106
P KTP+S+LQE R G P Y+L++ EG H+P F +RVTV D G G
Sbjct: 27 PGKTPISLLQEYGTRIGKTPVYDLLKAEGQAHQPNFTFRVTVGDTSCTGQGPSKKAAKHK 86
Query: 107 XXXXLLDKLTGAT---PADQTTNGNVPETGAV---VPTFEDKLMGNPVG--WLQELCMSR 158
L L G + PA + ++ P ++ +P F PV L
Sbjct: 87 AAEVALKHLKGGSMLEPALEDSSSFSPLDSSLPEDIPVFTAAAAATPVPSVVLTRSPPME 146
Query: 159 FWPPPSYHAENDDNVNR----------RLP-----------HERHFTIICTLLKRREVGT 197
PP S + V RLP H + FT+ C + + E+G+
Sbjct: 147 LQPPVSPQQSECNPVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVERFIEIGS 206
Query: 198 GKSKKLAKRQAAYKMWQALQDNPPESFQNDDEGGVAARYADLKDSKISTLTTSHSHKVSQ 257
G SKKLAKR AA KM + P ++ ++ ++ S++ L +
Sbjct: 207 GTSKKLAKRNAAAKMLLRVHTVPLDARDGNEVEPDDDHFSIGVGSRLDGL---RNRGPGC 263
Query: 258 FHKHLKQSVGPNLAKLQVTPLNNKDF---NFVQFLQEIASEQSFEVTYVDIEEKSMTGLC 314
L+ SVG + L+ L + + L E++ EQ+F V+Y+DIEE S++GLC
Sbjct: 264 TWDSLRNSVGEKILSLRSCSLGSLGALGPACCRVLSELSEEQAFHVSYLDIEELSLSGLC 323
Query: 315 QCLVQLSTLPVAVCHGAGLTSKDAQSSAAQNALEYLKIM 353
QCLV+LST P VCHG+ T + A+ AA+ AL+YLKIM
Sbjct: 324 QCLVELSTQPATVCHGSATTREAARGEAARRALQYLKIM 362
>BC005860-1|AAH05860.1| 366|Homo sapiens Tar (HIV-1) RNA binding
protein 2 protein.
Length = 366
Score = 140 bits (338), Expect = 9e-33
Identities = 108/339 (31%), Positives = 157/339 (46%), Gaps = 35/339 (10%)
Query: 47 PTKTPVSVLQELLARRGTVPKYELVQIEGMIHEPTFRYRVTVADLVAMGTGRXXXXXXXX 106
P KTP+S+LQE R G P Y+L++ EG H+P F +RVTV D G G
Sbjct: 27 PGKTPISLLQEYGTRIGKTPVYDLLKAEGQAHQPNFTFRVTVGDTSCTGQGPSKKAAKHK 86
Query: 107 XXXXLLDKLTGAT---PADQTTNGNVPETGAV---VPTFEDKLMGNPVG--WLQELCMSR 158
L L G + PA + ++ P ++ +P F PV L
Sbjct: 87 AAEVALKHLKGGSMLEPALEDSSSFSPLDSSLPEDIPVFTAAAAATPVPSVVLTRSPPME 146
Query: 159 FWPPPSYHAENDDNVNR----------RLP-----------HERHFTIICTLLKRREVGT 197
PP S + V RLP H + FT+ C + + E+G+
Sbjct: 147 LQPPVSPQQSECNPVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVERFIEIGS 206
Query: 198 GKSKKLAKRQAAYKMWQALQDNPPESFQNDDEGGVAARYADLKDSKISTLTTSHSHKVSQ 257
G SKKLAKR AA KM + P ++ ++ ++ S++ L +
Sbjct: 207 GTSKKLAKRNAAAKMLLRVHTVPLDARDGNEVEPDDDHFSIGVGSRLDGL---RNRGPGC 263
Query: 258 FHKHLKQSVGPNLAKLQVTPLNNKDF---NFVQFLQEIASEQSFEVTYVDIEEKSMTGLC 314
L+ SVG + L+ L + + L E++ EQ+F V+Y+DIEE S++GLC
Sbjct: 264 TWDSLRNSVGEKILSLRSCSLGSLGALGPACCRVLSELSEEQAFHVSYLDIEELSLSGLC 323
Query: 315 QCLVQLSTLPVAVCHGAGLTSKDAQSSAAQNALEYLKIM 353
QCLV+LST P VCHG+ T + A+ AA+ AL+YLKIM
Sbjct: 324 QCLVELSTQPATVCHGSATTREAARGEAARRALQYLKIM 362
>M60801-1|AAA36765.1| 345|Homo sapiens TAR RNA binding protein
protein.
Length = 345
Score = 138 bits (335), Expect = 2e-32
Identities = 106/343 (30%), Positives = 155/343 (45%), Gaps = 43/343 (12%)
Query: 47 PTKTPVSVLQELLARRGTVPKYELVQIEGMIHEPTFRYRVTVADLVAMGTGRXXXXXXXX 106
P KTP+S+LQE R G P Y+L++ EG H+P F +RVTV D G G
Sbjct: 6 PGKTPISLLQEYGTRIGKTPVYDLLKAEGQAHQPNFTFRVTVGDTSCTGQGPSKKAAKHK 65
Query: 107 XXXXLLDKLTGA-------------TPADQTTNGNVP---ETGAVVPTFEDKLMGNPVGW 150
L L G +P D + ++P A P L +P
Sbjct: 66 AAEVALKHLKGGSMLEPALEDSSSFSPLDSSLPEDIPVFTAAAAATPVPSVVLTRSPAME 125
Query: 151 LQ-----------------ELCMSRFWPPPSYHAENDDNVNRRLPHERHFTIICTLLKRR 193
LQ EL + + W P Y + H + FT+ C + +
Sbjct: 126 LQPPVSPQQSECNPVGALQELVVQKGWRLPEYTVTQESGP----AHRKEFTMTCRVERFI 181
Query: 194 EVGTGKSKKLAKRQAAYKMWQALQDNPPESFQNDDEGGVAARYADLKDSKISTLTTSHSH 253
E+G+G SKKLAKR AA KM + P ++ ++ ++ ++ L +
Sbjct: 182 EIGSGTSKKLAKRNAAAKMLLRVHTVPLDARDGNEVEPDDDHFSIGVGFRLDGL---RNR 238
Query: 254 KVSQFHKHLKQSVGPNLAKLQVTPLNNKDF---NFVQFLQEIASEQSFEVTYVDIEEKSM 310
L+ SVG + L+ L + + L E++ EQ+F V+Y+DIEE S+
Sbjct: 239 GPGCTWDSLRNSVGEKILSLRSCSLGSLGALGPACCRVLSELSEEQAFHVSYLDIEELSL 298
Query: 311 TGLCQCLVQLSTLPVAVCHGAGLTSKDAQSSAAQNALEYLKIM 353
+GLCQCLV+LST P VCHG+ T + A+ AA+ AL+YLKIM
Sbjct: 299 SGLCQCLVELSTQPATVCHGSATTREAARGEAARRALQYLKIM 341
>U08998-1|AAB50581.2| 366|Homo sapiens TAR RNA binding protein 2
protein.
Length = 366
Score = 137 bits (332), Expect = 5e-32
Identities = 107/339 (31%), Positives = 156/339 (46%), Gaps = 35/339 (10%)
Query: 47 PTKTPVSVLQELLARRGTVPKYELVQIEGMIHEPTFRYRVTVADLVAMGTGRXXXXXXXX 106
P KTP+S+LQE R G P Y+L++ EG H+P F +RVTV D G G
Sbjct: 27 PGKTPISLLQEYGTRIGKTPVYDLLKAEGQAHQPNFTFRVTVGDTSCTGQGPSKKAAKHK 86
Query: 107 XXXXLLDKLTGAT---PADQTTNGNVPETGAV---VPTFEDKLMGNPVG--WLQELCMSR 158
L L G + PA + ++ P ++ +P F PV L
Sbjct: 87 AAEVALKHLKGGSMLEPALEDSSSFSPLDSSLPEDIPVFTAAAAATPVPSVVLTRSPPME 146
Query: 159 FWPPPSYHAENDDNVNR----------RLP-----------HERHFTIICTLLKRREVGT 197
PP S + V RLP H + FT+ C + + E+G+
Sbjct: 147 LQPPVSPQQSECNPVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVERFIEIGS 206
Query: 198 GKSKKLAKRQAAYKMWQALQDNPPESFQNDDEGGVAARYADLKDSKISTLTTSHSHKVSQ 257
G SKKLAKR AA KM + P ++ ++ ++ ++ L +
Sbjct: 207 GTSKKLAKRNAAAKMLLRVHTVPLDARDGNEVEPDDDHFSIGVGFRLDGL---RNRGPGC 263
Query: 258 FHKHLKQSVGPNLAKLQVTPLNNKDF---NFVQFLQEIASEQSFEVTYVDIEEKSMTGLC 314
L+ SVG + L+ L + + L E++ EQ+F V+Y+DIEE S++GLC
Sbjct: 264 TWDSLRNSVGEKILSLRSCSLGSLGALGPACCRVLSELSEEQAFHVSYLDIEELSLSGLC 323
Query: 315 QCLVQLSTLPVAVCHGAGLTSKDAQSSAAQNALEYLKIM 353
QCLV+LST P VCHG+ T + A+ AA+ AL+YLKIM
Sbjct: 324 QCLVELSTQPATVCHGSATTREAARGEAARRALQYLKIM 362
>AL133174-4|CAI42819.1| 494|Homo sapiens staufen, RNA binding
protein, homolog 1 (Drosophila) protein.
Length = 494
Score = 55.2 bits (127), Expect = 3e-07
Identities = 52/209 (24%), Positives = 88/209 (42%), Gaps = 13/209 (6%)
Query: 19 RRYQTRPKPNNLQRLPLDEAAKREMESLPTKTPVSVLQELLARRGTVPKYELVQIEGMIH 78
R Q P P L+ + E E+L K+ +S + E+ +R +E+ + G H
Sbjct: 77 RILQNEPLPERLEV----NGRESEEENL-NKSEISQVFEIALKRNLPVNFEVARESGPPH 131
Query: 79 EPTFRYRVTVADLVAMGTGRXXXXXXXXXXXXLLDKLTGATP--ADQTTNGNVPE-TGAV 135
F +V+V + V G G+ +L++L P A + + + T +
Sbjct: 132 MKNFVTKVSVGEFVGEGEGKSKKISKKNAAIAVLEELKKLPPLPAVERVKPRIKKKTKPI 191
Query: 136 VPTFEDKLMG-NPVGWLQELCMSRFWPPPSYHAENDDNVNRRLPHERHFTIICTLLKRRE 194
V T + G NP+ L ++ ++ P Y + R LP R F + +
Sbjct: 192 VKTSPEYGQGINPISRLAQIQQAKKEKEPEYTLLTE----RGLPRRREFVMQVKVGNHTA 247
Query: 195 VGTGKSKKLAKRQAAYKMWQALQDNPPES 223
GTG +KK+AKR AA M + L P++
Sbjct: 248 EGTGTNKKVAKRNAAENMLEILGFKVPQA 276
>AF281068-2|AAL55730.1| 53|Homo sapiens TAR RNA-binding protein
TRBP1 protein.
Length = 53
Score = 54.0 bits (124), Expect = 8e-07
Identities = 23/44 (52%), Positives = 30/44 (68%)
Query: 47 PTKTPVSVLQELLARRGTVPKYELVQIEGMIHEPTFRYRVTVAD 90
P KTP+S+LQE R G P Y+L++ EG H+P F +RVTV D
Sbjct: 6 PGKTPISLLQEYGTRIGKTPVYDLLKAEGQAHQPNFTFRVTVGD 49
>AF281068-1|AAL55731.1| 74|Homo sapiens TAR RNA-binding protein
TRBP2 protein.
Length = 74
Score = 54.0 bits (124), Expect = 8e-07
Identities = 23/44 (52%), Positives = 30/44 (68%)
Query: 47 PTKTPVSVLQELLARRGTVPKYELVQIEGMIHEPTFRYRVTVAD 90
P KTP+S+LQE R G P Y+L++ EG H+P F +RVTV D
Sbjct: 27 PGKTPISLLQEYGTRIGKTPVYDLLKAEGQAHQPNFTFRVTVGD 70
>BC095397-1|AAH95397.1| 496|Homo sapiens staufen, RNA binding
protein, homolog 1 (Drosophila) protein.
Length = 496
Score = 50.4 bits (115), Expect = 9e-06
Identities = 51/211 (24%), Positives = 86/211 (40%), Gaps = 15/211 (7%)
Query: 19 RRYQTRPKPNNLQRLPLDEAAKREMESLPTKTPVSVLQELLARRGTVPKYELVQIEGMIH 78
R Q P P L+ + E E+L K+ +S + E+ +R +E+ + G H
Sbjct: 77 RILQNEPLPERLEV----NGRESEEENL-NKSEISQVFEIALKRNLPVNFEVARESGPPH 131
Query: 79 EPTFRYRVTVADLVAMGTGRXXXXXXXXXXXXLLDKLTGATP--ADQTTNGNVPE-TGAV 135
F +V+V + V G G+ +L++L P A + + + T +
Sbjct: 132 MKNFVTKVSVGEFVGEGEGKSKKISKKNAAIAVLEELKKLPPLPAVERVKPRIKKKTKPI 191
Query: 136 VPTFEDKLMG---NPVGWLQELCMSRFWPPPSYHAENDDNVNRRLPHERHFTIICTLLKR 192
V G NP+ L ++ ++ P Y + R LP R F + +
Sbjct: 192 VKPQTSPEYGQGINPISRLAQIQQAKKEKEPEYTLLTE----RGLPRRREFVMQVKVGNH 247
Query: 193 REVGTGKSKKLAKRQAAYKMWQALQDNPPES 223
GTG +KK+AKR AA M + L P++
Sbjct: 248 TAEGTGTNKKVAKRNAAENMLEILGFKVPQA 278
>BC050432-1|AAH50432.1| 577|Homo sapiens staufen, RNA binding
protein, homolog 1 (Drosophila) protein.
Length = 577
Score = 50.4 bits (115), Expect = 9e-06
Identities = 51/211 (24%), Positives = 86/211 (40%), Gaps = 15/211 (7%)
Query: 19 RRYQTRPKPNNLQRLPLDEAAKREMESLPTKTPVSVLQELLARRGTVPKYELVQIEGMIH 78
R Q P P L+ + E E+L K+ +S + E+ +R +E+ + G H
Sbjct: 158 RILQNEPLPERLEV----NGRESEEENL-NKSEISQVFEIALKRNLPVNFEVARESGPPH 212
Query: 79 EPTFRYRVTVADLVAMGTGRXXXXXXXXXXXXLLDKLTGATP--ADQTTNGNVPE-TGAV 135
F +V+V + V G G+ +L++L P A + + + T +
Sbjct: 213 MKNFVTKVSVGEFVGEGEGKSKKISKKNAAIAVLEELKKLPPLPAVERVKPRIKKKTKPI 272
Query: 136 VPTFEDKLMG---NPVGWLQELCMSRFWPPPSYHAENDDNVNRRLPHERHFTIICTLLKR 192
V G NP+ L ++ ++ P Y + R LP R F + +
Sbjct: 273 VKPQTSPEYGQGINPISRLAQIQQAKKEKEPEYTLLTE----RGLPRRREFVMQVKVGNH 328
Query: 193 REVGTGKSKKLAKRQAAYKMWQALQDNPPES 223
GTG +KK+AKR AA M + L P++
Sbjct: 329 TAEGTGTNKKVAKRNAAENMLEILGFKVPQA 359
>AL133174-8|CAC14085.1| 577|Homo sapiens staufen, RNA binding
protein, homolog 1 (Drosophila) protein.
Length = 577
Score = 50.4 bits (115), Expect = 9e-06
Identities = 51/211 (24%), Positives = 86/211 (40%), Gaps = 15/211 (7%)
Query: 19 RRYQTRPKPNNLQRLPLDEAAKREMESLPTKTPVSVLQELLARRGTVPKYELVQIEGMIH 78
R Q P P L+ + E E+L K+ +S + E+ +R +E+ + G H
Sbjct: 158 RILQNEPLPERLEV----NGRESEEENL-NKSEISQVFEIALKRNLPVNFEVARESGPPH 212
Query: 79 EPTFRYRVTVADLVAMGTGRXXXXXXXXXXXXLLDKLTGATP--ADQTTNGNVPE-TGAV 135
F +V+V + V G G+ +L++L P A + + + T +
Sbjct: 213 MKNFVTKVSVGEFVGEGEGKSKKISKKNAAIAVLEELKKLPPLPAVERVKPRIKKKTKPI 272
Query: 136 VPTFEDKLMG---NPVGWLQELCMSRFWPPPSYHAENDDNVNRRLPHERHFTIICTLLKR 192
V G NP+ L ++ ++ P Y + R LP R F + +
Sbjct: 273 VKPQTSPEYGQGINPISRLAQIQQAKKEKEPEYTLLTE----RGLPRRREFVMQVKVGNH 328
Query: 193 REVGTGKSKKLAKRQAAYKMWQALQDNPPES 223
GTG +KK+AKR AA M + L P++
Sbjct: 329 TAEGTGTNKKVAKRNAAENMLEILGFKVPQA 359
>AL133174-3|CAC14084.1| 496|Homo sapiens staufen, RNA binding
protein, homolog 1 (Drosophila) protein.
Length = 496
Score = 50.4 bits (115), Expect = 9e-06
Identities = 51/211 (24%), Positives = 86/211 (40%), Gaps = 15/211 (7%)
Query: 19 RRYQTRPKPNNLQRLPLDEAAKREMESLPTKTPVSVLQELLARRGTVPKYELVQIEGMIH 78
R Q P P L+ + E E+L K+ +S + E+ +R +E+ + G H
Sbjct: 77 RILQNEPLPERLEV----NGRESEEENL-NKSEISQVFEIALKRNLPVNFEVARESGPPH 131
Query: 79 EPTFRYRVTVADLVAMGTGRXXXXXXXXXXXXLLDKLTGATP--ADQTTNGNVPE-TGAV 135
F +V+V + V G G+ +L++L P A + + + T +
Sbjct: 132 MKNFVTKVSVGEFVGEGEGKSKKISKKNAAIAVLEELKKLPPLPAVERVKPRIKKKTKPI 191
Query: 136 VPTFEDKLMG---NPVGWLQELCMSRFWPPPSYHAENDDNVNRRLPHERHFTIICTLLKR 192
V G NP+ L ++ ++ P Y + R LP R F + +
Sbjct: 192 VKPQTSPEYGQGINPISRLAQIQQAKKEKEPEYTLLTE----RGLPRRREFVMQVKVGNH 247
Query: 193 REVGTGKSKKLAKRQAAYKMWQALQDNPPES 223
GTG +KK+AKR AA M + L P++
Sbjct: 248 TAEGTGTNKKVAKRNAAENMLEILGFKVPQA 278
>AB209561-1|BAD92798.1| 591|Homo sapiens staufen isoform b variant
protein.
Length = 591
Score = 50.4 bits (115), Expect = 9e-06
Identities = 51/211 (24%), Positives = 86/211 (40%), Gaps = 15/211 (7%)
Query: 19 RRYQTRPKPNNLQRLPLDEAAKREMESLPTKTPVSVLQELLARRGTVPKYELVQIEGMIH 78
R Q P P L+ + E E+L K+ +S + E+ +R +E+ + G H
Sbjct: 172 RILQNEPLPERLEV----NGRESEEENL-NKSEISQVFEIALKRNLPVNFEVARESGPPH 226
Query: 79 EPTFRYRVTVADLVAMGTGRXXXXXXXXXXXXLLDKLTGATP--ADQTTNGNVPE-TGAV 135
F +V+V + V G G+ +L++L P A + + + T +
Sbjct: 227 MKNFVTKVSVGEFVGEGEGKSKKISKKNAAIAVLEELKKLPPLPAVERVKPRIKKKTKPI 286
Query: 136 VPTFEDKLMG---NPVGWLQELCMSRFWPPPSYHAENDDNVNRRLPHERHFTIICTLLKR 192
V G NP+ L ++ ++ P Y + R LP R F + +
Sbjct: 287 VKPQTSPEYGQGINPISRLAQIQQAKKEKEPEYTLLTE----RGLPRRREFVMQVKVGNH 342
Query: 193 REVGTGKSKKLAKRQAAYKMWQALQDNPPES 223
GTG +KK+AKR AA M + L P++
Sbjct: 343 TAEGTGTNKKVAKRNAAENMLEILGFKVPQA 373
>AJ132258-1|CAB40082.1| 496|Homo sapiens staufen protein protein.
Length = 496
Score = 50.0 bits (114), Expect = 1e-05
Identities = 51/210 (24%), Positives = 85/210 (40%), Gaps = 15/210 (7%)
Query: 19 RRYQTRPKPNNLQRLPLDEAAKREMESLPTKTPVSVLQELLARRGTVPKYELVQIEGMIH 78
R Q P P L+ + E E+L K+ +S + E+ +R +E+ + G H
Sbjct: 77 RILQNEPLPERLEV----NGRESEEENL-NKSEISQVFEIALKRNLPVNFEVARESGPPH 131
Query: 79 EPTFRYRVTVADLVAMGTGRXXXXXXXXXXXXLLDKLTGATP--ADQTTNGNVPE-TGAV 135
F +V+V + V G G+ +L++L P A + + + T +
Sbjct: 132 MKNFVTKVSVGEFVGEGEGKSKKISKKNAAIAVLEELKKLPPLPAVERVKPRIKKKTKPI 191
Query: 136 VPTFEDKLMG---NPVGWLQELCMSRFWPPPSYHAENDDNVNRRLPHERHFTIICTLLKR 192
V G NP+ L ++ ++ P Y + R LP R F + +
Sbjct: 192 VKPQTSPEYGQGINPISRLAQIQQAKKEKEPEYTLLTE----RGLPRRREFVMQVKVGNH 247
Query: 193 REVGTGKSKKLAKRQAAYKMWQALQDNPPE 222
GTG +KK+AKR AA M + L P+
Sbjct: 248 TAEGTGTNKKVAKRNAAENMLEILGFKVPQ 277
>AF061941-1|AAD17533.1| 496|Homo sapiens staufen protein protein.
Length = 496
Score = 50.0 bits (114), Expect = 1e-05
Identities = 51/210 (24%), Positives = 85/210 (40%), Gaps = 15/210 (7%)
Query: 19 RRYQTRPKPNNLQRLPLDEAAKREMESLPTKTPVSVLQELLARRGTVPKYELVQIEGMIH 78
R Q P P L+ + E E+L K+ +S + E+ +R +E+ + G H
Sbjct: 77 RILQNEPLPERLEV----NGRESEEENL-NKSEISQVFEIALKRNLPVNFEVARESGPPH 131
Query: 79 EPTFRYRVTVADLVAMGTGRXXXXXXXXXXXXLLDKLTGATP--ADQTTNGNVPE-TGAV 135
F +V+V + V G G+ +L++L P A + + + T +
Sbjct: 132 MKNFVTKVSVGEFVGEGEGKSKKISKKNAAIAVLEELKKLPPLPAVERVKPRIKKKTKPI 191
Query: 136 VPTFEDKLMG---NPVGWLQELCMSRFWPPPSYHAENDDNVNRRLPHERHFTIICTLLKR 192
V G NP+ L ++ ++ P Y + R LP R F + +
Sbjct: 192 VKPQTSPEYGQGINPISRLAQIQQAKKEKEPEYTLLTE----RGLPRRREFVMQVKVGNH 247
Query: 193 REVGTGKSKKLAKRQAAYKMWQALQDNPPE 222
GTG +KK+AKR AA M + L P+
Sbjct: 248 TAEGTGTNKKVAKRNAAENMLEILGFKVPQ 277
>AF061940-1|AAD17532.1| 496|Homo sapiens staufen protein protein.
Length = 496
Score = 50.0 bits (114), Expect = 1e-05
Identities = 51/210 (24%), Positives = 85/210 (40%), Gaps = 15/210 (7%)
Query: 19 RRYQTRPKPNNLQRLPLDEAAKREMESLPTKTPVSVLQELLARRGTVPKYELVQIEGMIH 78
R Q P P L+ + E E+L K+ +S + E+ +R +E+ + G H
Sbjct: 77 RILQNEPLPERLEV----NGRESEEENL-NKSEISQVFEIALKRNLPVNFEVARESGPPH 131
Query: 79 EPTFRYRVTVADLVAMGTGRXXXXXXXXXXXXLLDKLTGATP--ADQTTNGNVPE-TGAV 135
F +V+V + V G G+ +L++L P A + + + T +
Sbjct: 132 MKNFVTKVSVGEFVGEGEGKSKKISKKNAAIAVLEELKKLPPLPAVERVKPRIKKKTKPI 191
Query: 136 VPTFEDKLMG---NPVGWLQELCMSRFWPPPSYHAENDDNVNRRLPHERHFTIICTLLKR 192
V G NP+ L ++ ++ P Y + R LP R F + +
Sbjct: 192 VKPQTSPEYGQGINPISRLAQIQQAKKEKEPEYTLLTE----RGLPRRREFVMQVKVGNH 247
Query: 193 REVGTGKSKKLAKRQAAYKMWQALQDNPPE 222
GTG +KK+AKR AA M + L P+
Sbjct: 248 TAEGTGTNKKVAKRNAAENMLEILGFKVPQ 277
>AF061939-1|AAD17531.1| 577|Homo sapiens staufen protein protein.
Length = 577
Score = 50.0 bits (114), Expect = 1e-05
Identities = 51/210 (24%), Positives = 85/210 (40%), Gaps = 15/210 (7%)
Query: 19 RRYQTRPKPNNLQRLPLDEAAKREMESLPTKTPVSVLQELLARRGTVPKYELVQIEGMIH 78
R Q P P L+ + E E+L K+ +S + E+ +R +E+ + G H
Sbjct: 158 RILQNEPLPERLEV----NGRESEEENL-NKSEISQVFEIALKRNLPVNFEVARESGPPH 212
Query: 79 EPTFRYRVTVADLVAMGTGRXXXXXXXXXXXXLLDKLTGATP--ADQTTNGNVPE-TGAV 135
F +V+V + V G G+ +L++L P A + + + T +
Sbjct: 213 MKNFVTKVSVGEFVGEGEGKSKKISKKNAAIAVLEELKKLPPLPAVERVKPRIKKKTKPI 272
Query: 136 VPTFEDKLMG---NPVGWLQELCMSRFWPPPSYHAENDDNVNRRLPHERHFTIICTLLKR 192
V G NP+ L ++ ++ P Y + R LP R F + +
Sbjct: 273 VKPQTSPEYGQGINPISRLAQIQQAKKEKEPEYTLLTE----RGLPRRREFVMQVKVGNH 328
Query: 193 REVGTGKSKKLAKRQAAYKMWQALQDNPPE 222
GTG +KK+AKR AA M + L P+
Sbjct: 329 TAEGTGTNKKVAKRNAAENMLEILGFKVPQ 358
>AF061938-1|AAD17530.1| 496|Homo sapiens staufen protein protein.
Length = 496
Score = 50.0 bits (114), Expect = 1e-05
Identities = 51/210 (24%), Positives = 85/210 (40%), Gaps = 15/210 (7%)
Query: 19 RRYQTRPKPNNLQRLPLDEAAKREMESLPTKTPVSVLQELLARRGTVPKYELVQIEGMIH 78
R Q P P L+ + E E+L K+ +S + E+ +R +E+ + G H
Sbjct: 77 RILQNEPLPERLEV----NGRESEEENL-NKSEISQVFEIALKRNLPVNFEVARESGPPH 131
Query: 79 EPTFRYRVTVADLVAMGTGRXXXXXXXXXXXXLLDKLTGATP--ADQTTNGNVPE-TGAV 135
F +V+V + V G G+ +L++L P A + + + T +
Sbjct: 132 MKNFVTKVSVGEFVGEGEGKSKKISKKNAAIAVLEELKKLPPLPAVERVKPRIKKKTKPI 191
Query: 136 VPTFEDKLMG---NPVGWLQELCMSRFWPPPSYHAENDDNVNRRLPHERHFTIICTLLKR 192
V G NP+ L ++ ++ P Y + R LP R F + +
Sbjct: 192 VKPQTSPEYGQGINPISRLAQIQQAKKEKEPEYTLLTE----RGLPRRREFVMQVKVGNH 247
Query: 193 REVGTGKSKKLAKRQAAYKMWQALQDNPPE 222
GTG +KK+AKR AA M + L P+
Sbjct: 248 TAEGTGTNKKVAKRNAAENMLEILGFKVPQ 277
>AK002152-1|BAA92111.1| 570|Homo sapiens protein ( Homo sapiens
cDNA FLJ11290 fis, clone PLACE1009622, weakly similar to
MATERNAL EFFECT PROTEIN STAUFEN. ).
Length = 570
Score = 48.0 bits (109), Expect = 5e-05
Identities = 52/204 (25%), Positives = 81/204 (39%), Gaps = 7/204 (3%)
Query: 49 KTPVSVLQELLARRGTVPKYELVQIEGMIHEPTFRYRVTVADLVAMGTGRXXXXXXXXXX 108
KT + ++ EL P+Y+L+ G H F ++++ + G
Sbjct: 7 KTAMCLVNELARFNRVQPQYKLLNERGPAHSKMFSVQLSLGEQTWESEGSSIKKAQQAVA 66
Query: 109 XXLLDKLTGATPADQTTNGNVPET-GAVVPTFEDKLMGNPVGWLQELCMSRFWPPPSYHA 167
L + T P + NV G++ PT E + G P P+Y A
Sbjct: 67 NKALTESTLPKPVQKPPKSNVNNNPGSITPTVELNGLAMKRGEPAIYRPLDPKPFPNYRA 126
Query: 168 ENDDN--VNRRL--PHERHFTIICTLLKRREVGTGKSKKLAKRQAAYKMWQALQDNP-PE 222
+ N+R P + F + T+ G GK+++ A+ AA K QALQ+ P PE
Sbjct: 127 NYNFRGMYNQRYHCPVPKIFYVQLTVGNNEFFGEGKTRQAARHNAAMKALQALQNEPIPE 186
Query: 223 -SFQNDDEGGVAARYADLKDSKIS 245
S QN + G D S+IS
Sbjct: 187 RSPQNGESGKDMDDDKDANKSEIS 210
Score = 46.4 bits (105), Expect = 2e-04
Identities = 46/199 (23%), Positives = 84/199 (42%), Gaps = 17/199 (8%)
Query: 22 QTRPKPNNLQRLPLDEAAKREMESLP--TKTPVSVLQELLARRGTVPKYELVQIEGMIHE 79
Q P P +R P + + ++M+ K+ +S++ E+ +R +E+++ G H
Sbjct: 180 QNEPIP---ERSPQNGESGKDMDDDKDANKSEISLVFEIALKRNMPVSFEVIKESGPPHM 236
Query: 80 PTFRYRVTVADLVAMGTGRXXXXXXXXXXXXLLDKLTGATPADQTTNGNV-----PETGA 134
+F RV+V + A G G +L +L P + P+T
Sbjct: 237 KSFVTRVSVGEFSAEGEGNSKKLSKKRAATTVLQELKKLPPLPVVEKPKLFFKKRPKT-- 294
Query: 135 VVPTFEDKLMG-NPVGWLQELCMSRFWPPPSYHAENDDNVNRRLPHERHFTIICTLLKRR 193
+V + G NP+ L ++ ++ P Y ++ R +P R F + +
Sbjct: 295 IVKAGPEYGQGMNPISRLAQIQQAKKEKEPDYVLLSE----RGMPRRREFVMQVKVGNEV 350
Query: 194 EVGTGKSKKLAKRQAAYKM 212
GTG +KK+AK+ AA M
Sbjct: 351 ATGTGPNKKIAKKNAAEAM 369
Score = 31.5 bits (68), Expect = 4.7
Identities = 16/44 (36%), Positives = 25/44 (56%)
Query: 178 PHERHFTIICTLLKRREVGTGKSKKLAKRQAAYKMWQALQDNPP 221
PH + F ++ + G G SKKL+K++AA + Q L+ PP
Sbjct: 234 PHMKSFVTRVSVGEFSAEGEGNSKKLSKKRAATTVLQELKKLPP 277
>AF459097-1|AAN37926.1| 570|Homo sapiens double-stranded
RNA-binding protein Staufen2 long isoform protein.
Length = 570
Score = 48.0 bits (109), Expect = 5e-05
Identities = 52/204 (25%), Positives = 81/204 (39%), Gaps = 7/204 (3%)
Query: 49 KTPVSVLQELLARRGTVPKYELVQIEGMIHEPTFRYRVTVADLVAMGTGRXXXXXXXXXX 108
KT + ++ EL P+Y+L+ G H F ++++ + G
Sbjct: 7 KTAMCLVNELARFNRVQPQYKLLNERGPAHSKMFSVQLSLGEQTWESEGSSIKKAQQAVA 66
Query: 109 XXLLDKLTGATPADQTTNGNVPET-GAVVPTFEDKLMGNPVGWLQELCMSRFWPPPSYHA 167
L + T P + NV G++ PT E + G P P+Y A
Sbjct: 67 NKALTESTLPKPVQKPPKSNVNNNPGSITPTVELNGLAMKRGEPAIYRPLDPKPFPNYRA 126
Query: 168 ENDDN--VNRRL--PHERHFTIICTLLKRREVGTGKSKKLAKRQAAYKMWQALQDNP-PE 222
+ N+R P + F + T+ G GK+++ A+ AA K QALQ+ P PE
Sbjct: 127 NYNFRGMYNQRYHCPVPKIFYVQLTVGNNEFFGEGKTRQAARHNAAMKALQALQNEPIPE 186
Query: 223 -SFQNDDEGGVAARYADLKDSKIS 245
S QN + G D S+IS
Sbjct: 187 RSPQNGESGKDMDDDKDANKSEIS 210
Score = 46.4 bits (105), Expect = 2e-04
Identities = 46/199 (23%), Positives = 84/199 (42%), Gaps = 17/199 (8%)
Query: 22 QTRPKPNNLQRLPLDEAAKREMESLP--TKTPVSVLQELLARRGTVPKYELVQIEGMIHE 79
Q P P +R P + + ++M+ K+ +S++ E+ +R +E+++ G H
Sbjct: 180 QNEPIP---ERSPQNGESGKDMDDDKDANKSEISLVFEIALKRNMPVSFEVIKESGPPHM 236
Query: 80 PTFRYRVTVADLVAMGTGRXXXXXXXXXXXXLLDKLTGATPADQTTNGNV-----PETGA 134
+F RV+V + A G G +L +L P + P+T
Sbjct: 237 KSFVTRVSVGEFSAEGEGNSKKLSKKRAATTVLQELKKLPPLPVVEKPKLFFKKRPKT-- 294
Query: 135 VVPTFEDKLMG-NPVGWLQELCMSRFWPPPSYHAENDDNVNRRLPHERHFTIICTLLKRR 193
+V + G NP+ L ++ ++ P Y ++ R +P R F + +
Sbjct: 295 IVKAGPEYGQGMNPISRLAQIQQAKKEKEPDYVLLSE----RGMPRRREFVMQVKVGNEV 350
Query: 194 EVGTGKSKKLAKRQAAYKM 212
GTG +KK+AK+ AA M
Sbjct: 351 ATGTGPNKKIAKKNAAEAM 369
Score = 31.5 bits (68), Expect = 4.7
Identities = 16/44 (36%), Positives = 25/44 (56%)
Query: 178 PHERHFTIICTLLKRREVGTGKSKKLAKRQAAYKMWQALQDNPP 221
PH + F ++ + G G SKKL+K++AA + Q L+ PP
Sbjct: 234 PHMKSFVTRVSVGEFSAEGEGNSKKLSKKRAATTVLQELKKLPP 277
>Y19062-1|CAB64341.1| 479|Homo sapiens 39k3 protein protein.
Length = 479
Score = 46.4 bits (105), Expect = 2e-04
Identities = 46/199 (23%), Positives = 84/199 (42%), Gaps = 17/199 (8%)
Query: 22 QTRPKPNNLQRLPLDEAAKREMESLP--TKTPVSVLQELLARRGTVPKYELVQIEGMIHE 79
Q P P +R P + + ++M+ K+ +S++ E+ +R +E+++ G H
Sbjct: 148 QNEPIP---ERSPQNGESGKDMDDDKDANKSEISLVFEIALKRNMPVSFEVIKESGPPHM 204
Query: 80 PTFRYRVTVADLVAMGTGRXXXXXXXXXXXXLLDKLTGATPADQTTNGNV-----PETGA 134
+F RV+V + A G G +L +L P + P+T
Sbjct: 205 KSFVTRVSVGEFSAEGEGNSKKLSKKRAATTVLQELKKLPPLPVVEKPKLFFKKRPKT-- 262
Query: 135 VVPTFEDKLMG-NPVGWLQELCMSRFWPPPSYHAENDDNVNRRLPHERHFTIICTLLKRR 193
+V + G NP+ L ++ ++ P Y ++ R +P R F + +
Sbjct: 263 IVKAGPEYGQGMNPISRLAQIQQAKKEKEPDYVLLSE----RGMPRRREFVMQVKVGNEV 318
Query: 194 EVGTGKSKKLAKRQAAYKM 212
GTG +KK+AK+ AA M
Sbjct: 319 ATGTGPNKKIAKKNAAEAM 337
Score = 34.7 bits (76), Expect = 0.50
Identities = 27/84 (32%), Positives = 39/84 (46%), Gaps = 2/84 (2%)
Query: 164 SYHAENDDNVNRRLPHERHFTIICTLLKRREVGTGKSKKLAKRQAAYKMWQALQDNP-PE 222
+Y+ N P + F + T+ G GK+++ A+ AA K QALQ+ P PE
Sbjct: 95 NYNFRGMYNQRYHCPVPKIFYVQLTVGNNEFFGEGKTRQAARHNAAMKALQALQNEPIPE 154
Query: 223 -SFQNDDEGGVAARYADLKDSKIS 245
S QN + G D S+IS
Sbjct: 155 RSPQNGESGKDMDDDKDANKSEIS 178
Score = 31.5 bits (68), Expect = 4.7
Identities = 16/44 (36%), Positives = 25/44 (56%)
Query: 178 PHERHFTIICTLLKRREVGTGKSKKLAKRQAAYKMWQALQDNPP 221
PH + F ++ + G G SKKL+K++AA + Q L+ PP
Sbjct: 202 PHMKSFVTRVSVGEFSAEGEGNSKKLSKKRAATTVLQELKKLPP 245
>BC110447-1|AAI10448.1| 479|Homo sapiens staufen, RNA binding
protein, homolog 2 (Drosophila) protein.
Length = 479
Score = 46.4 bits (105), Expect = 2e-04
Identities = 46/199 (23%), Positives = 84/199 (42%), Gaps = 17/199 (8%)
Query: 22 QTRPKPNNLQRLPLDEAAKREMESLP--TKTPVSVLQELLARRGTVPKYELVQIEGMIHE 79
Q P P +R P + + ++M+ K+ +S++ E+ +R +E+++ G H
Sbjct: 148 QNEPIP---ERSPQNGESGKDMDDDKDANKSEISLVFEIALKRNMPVSFEVIKESGPPHM 204
Query: 80 PTFRYRVTVADLVAMGTGRXXXXXXXXXXXXLLDKLTGATPADQTTNGNV-----PETGA 134
+F RV+V + A G G +L +L P + P+T
Sbjct: 205 KSFVTRVSVGEFSAEGEGNSKKLSKKRAATTVLQELKKLPPLPVVEKPKLFFKKRPKT-- 262
Query: 135 VVPTFEDKLMG-NPVGWLQELCMSRFWPPPSYHAENDDNVNRRLPHERHFTIICTLLKRR 193
+V + G NP+ L ++ ++ P Y ++ R +P R F + +
Sbjct: 263 IVKAGPEYGQGMNPISRLAQIQQAKKEKEPDYVLLSE----RGMPRRREFVMQVKVGNEV 318
Query: 194 EVGTGKSKKLAKRQAAYKM 212
GTG +KK+AK+ AA M
Sbjct: 319 ATGTGPNKKIAKKNAAEAM 337
Score = 34.7 bits (76), Expect = 0.50
Identities = 27/84 (32%), Positives = 39/84 (46%), Gaps = 2/84 (2%)
Query: 164 SYHAENDDNVNRRLPHERHFTIICTLLKRREVGTGKSKKLAKRQAAYKMWQALQDNP-PE 222
+Y+ N P + F + T+ G GK+++ A+ AA K QALQ+ P PE
Sbjct: 95 NYNFRGMYNQRYHCPVPKIFYVQLTVGNNEFFGEGKTRQAARHNAAMKALQALQNEPIPE 154
Query: 223 -SFQNDDEGGVAARYADLKDSKIS 245
S QN + G D S+IS
Sbjct: 155 RSPQNGESGKDMDDDKDANKSEIS 178
Score = 31.5 bits (68), Expect = 4.7
Identities = 16/44 (36%), Positives = 25/44 (56%)
Query: 178 PHERHFTIICTLLKRREVGTGKSKKLAKRQAAYKMWQALQDNPP 221
PH + F ++ + G G SKKL+K++AA + Q L+ PP
Sbjct: 202 PHMKSFVTRVSVGEFSAEGEGNSKKLSKKRAATTVLQELKKLPP 245
>BC008369-1|AAH08369.1| 538|Homo sapiens STAU2 protein protein.
Length = 538
Score = 46.4 bits (105), Expect = 2e-04
Identities = 46/199 (23%), Positives = 84/199 (42%), Gaps = 17/199 (8%)
Query: 22 QTRPKPNNLQRLPLDEAAKREMESLP--TKTPVSVLQELLARRGTVPKYELVQIEGMIHE 79
Q P P +R P + + ++M+ K+ +S++ E+ +R +E+++ G H
Sbjct: 148 QNEPIP---ERSPQNGESGKDMDDDKDANKSEISLVFEIALKRNMPVSFEVIKESGPPHM 204
Query: 80 PTFRYRVTVADLVAMGTGRXXXXXXXXXXXXLLDKLTGATPADQTTNGNV-----PETGA 134
+F RV+V + A G G +L +L P + P+T
Sbjct: 205 KSFVTRVSVGEFSAEGEGNSKKLSKKRAATTVLQELKKLPPLPVVEKPKLFFKKRPKT-- 262
Query: 135 VVPTFEDKLMG-NPVGWLQELCMSRFWPPPSYHAENDDNVNRRLPHERHFTIICTLLKRR 193
+V + G NP+ L ++ ++ P Y ++ R +P R F + +
Sbjct: 263 IVKAGPEYGQGMNPISRLAQIQQAKKEKEPDYVLLSE----RGMPRRREFVMQVKVGNEV 318
Query: 194 EVGTGKSKKLAKRQAAYKM 212
GTG +KK+AK+ AA M
Sbjct: 319 ATGTGPNKKIAKKNAAEAM 337
Score = 34.7 bits (76), Expect = 0.50
Identities = 27/84 (32%), Positives = 39/84 (46%), Gaps = 2/84 (2%)
Query: 164 SYHAENDDNVNRRLPHERHFTIICTLLKRREVGTGKSKKLAKRQAAYKMWQALQDNP-PE 222
+Y+ N P + F + T+ G GK+++ A+ AA K QALQ+ P PE
Sbjct: 95 NYNFRGMYNQRYHCPVPKIFYVQLTVGNNEFFGEGKTRQAARHNAAMKALQALQNEPIPE 154
Query: 223 -SFQNDDEGGVAARYADLKDSKIS 245
S QN + G D S+IS
Sbjct: 155 RSPQNGESGKDMDDDKDANKSEIS 178
Score = 31.5 bits (68), Expect = 4.7
Identities = 16/44 (36%), Positives = 25/44 (56%)
Query: 178 PHERHFTIICTLLKRREVGTGKSKKLAKRQAAYKMWQALQDNPP 221
PH + F ++ + G G SKKL+K++AA + Q L+ PP
Sbjct: 202 PHMKSFVTRVSVGEFSAEGEGNSKKLSKKRAATTVLQELKKLPP 245
>AF459098-1|AAN37927.1| 538|Homo sapiens double-stranded
RNA-binding protein Staufen2 short isoform protein.
Length = 538
Score = 46.4 bits (105), Expect = 2e-04
Identities = 46/199 (23%), Positives = 84/199 (42%), Gaps = 17/199 (8%)
Query: 22 QTRPKPNNLQRLPLDEAAKREMESLP--TKTPVSVLQELLARRGTVPKYELVQIEGMIHE 79
Q P P +R P + + ++M+ K+ +S++ E+ +R +E+++ G H
Sbjct: 148 QNEPIP---ERSPQNGESGKDMDDDKDANKSEISLVFEIALKRNMPVSFEVIKESGPPHM 204
Query: 80 PTFRYRVTVADLVAMGTGRXXXXXXXXXXXXLLDKLTGATPADQTTNGNV-----PETGA 134
+F RV+V + A G G +L +L P + P+T
Sbjct: 205 KSFVTRVSVGEFSAEGEGNSKKLSKKRAATTVLQELKKLPPLPVVEKPKLFFKKRPKT-- 262
Query: 135 VVPTFEDKLMG-NPVGWLQELCMSRFWPPPSYHAENDDNVNRRLPHERHFTIICTLLKRR 193
+V + G NP+ L ++ ++ P Y ++ R +P R F + +
Sbjct: 263 IVKAGPEYGQGMNPISRLAQIQQAKKEKEPDYVLLSE----RGMPRRREFVMQVKVGNEV 318
Query: 194 EVGTGKSKKLAKRQAAYKM 212
GTG +KK+AK+ AA M
Sbjct: 319 ATGTGPNKKIAKKNAAEAM 337
Score = 34.7 bits (76), Expect = 0.50
Identities = 27/84 (32%), Positives = 39/84 (46%), Gaps = 2/84 (2%)
Query: 164 SYHAENDDNVNRRLPHERHFTIICTLLKRREVGTGKSKKLAKRQAAYKMWQALQDNP-PE 222
+Y+ N P + F + T+ G GK+++ A+ AA K QALQ+ P PE
Sbjct: 95 NYNFRGMYNQRYHCPVPKIFYVQLTVGNNEFFGEGKTRQAARHNAAMKALQALQNEPIPE 154
Query: 223 -SFQNDDEGGVAARYADLKDSKIS 245
S QN + G D S+IS
Sbjct: 155 RSPQNGESGKDMDDDKDANKSEIS 178
Score = 31.5 bits (68), Expect = 4.7
Identities = 16/44 (36%), Positives = 25/44 (56%)
Query: 178 PHERHFTIICTLLKRREVGTGKSKKLAKRQAAYKMWQALQDNPP 221
PH + F ++ + G G SKKL+K++AA + Q L+ PP
Sbjct: 202 PHMKSFVTRVSVGEFSAEGEGNSKKLSKKRAATTVLQELKKLPP 245
>AB210014-1|BAE06096.1| 490|Homo sapiens STAU2 variant protein
protein.
Length = 490
Score = 46.0 bits (104), Expect = 2e-04
Identities = 40/170 (23%), Positives = 72/170 (42%), Gaps = 12/170 (7%)
Query: 49 KTPVSVLQELLARRGTVPKYELVQIEGMIHEPTFRYRVTVADLVAMGTGRXXXXXXXXXX 108
K+ +S++ E+ +R +E+++ G H +F RV+V + A G G
Sbjct: 185 KSEISLVFEIALKRNMPVSFEVIKESGPPHMKSFVTRVSVGEFSAEGEGNSKKLSKKRAA 244
Query: 109 XXLLDKLTGATPADQTTNGNV-----PETGAVVPTFEDKLMG-NPVGWLQELCMSRFWPP 162
+L +L P + P+T +V + G NP+ L ++ ++
Sbjct: 245 TTVLQELKKLPPLPVVEKPKLFFKKRPKT--IVKAGPEYGQGMNPISRLAQIQQAKKEKE 302
Query: 163 PSYHAENDDNVNRRLPHERHFTIICTLLKRREVGTGKSKKLAKRQAAYKM 212
P Y ++ R +P R F + + GTG +KK+AK+ AA M
Sbjct: 303 PDYVLLSE----RGMPRRREFVMQVKVGNEVATGTGPNKKIAKKNAAEAM 348
Score = 35.1 bits (77), Expect = 0.38
Identities = 27/84 (32%), Positives = 39/84 (46%), Gaps = 2/84 (2%)
Query: 164 SYHAENDDNVNRRLPHERHFTIICTLLKRREVGTGKSKKLAKRQAAYKMWQALQDNP-PE 222
+Y+ N P + F + T+ G GK+++ A+ AA K QALQ+ P PE
Sbjct: 106 NYNFRGMYNQRYHCPVPKIFYVQLTVGNNEFFGEGKTRQAARHNAAMKALQALQNEPIPE 165
Query: 223 -SFQNDDEGGVAARYADLKDSKIS 245
S QN + G D S+IS
Sbjct: 166 RSPQNGESGKDVDDDKDANKSEIS 189
Score = 31.5 bits (68), Expect = 4.7
Identities = 16/44 (36%), Positives = 25/44 (56%)
Query: 178 PHERHFTIICTLLKRREVGTGKSKKLAKRQAAYKMWQALQDNPP 221
PH + F ++ + G G SKKL+K++AA + Q L+ PP
Sbjct: 213 PHMKSFVTRVSVGEFSAEGEGNSKKLSKKRAATTVLQELKKLPP 256
>AY546099-1|AAS76637.1| 502|Homo sapiens staufen protein T4 variant
protein.
Length = 502
Score = 42.7 bits (96), Expect = 0.002
Identities = 53/217 (24%), Positives = 87/217 (40%), Gaps = 21/217 (9%)
Query: 19 RRYQTRPKPNNLQRLPLDEAAKREMESLPTKTPVSVLQELLARRGTVPKYE---LVQI-- 73
R Q P P L+ + E E+L K+ +S + E+ +R +E L Q+
Sbjct: 77 RILQNEPLPERLEV----NGRESEEENL-NKSEISQVFEIALKRNLPVNFESFPLKQVAR 131
Query: 74 -EGMIHEPTFRYRVTVADLVAMGTGRXXXXXXXXXXXXLLDKLTGATP--ADQTTNGNVP 130
G H F +V+V + V G G+ +L++L P A + +
Sbjct: 132 ESGPPHMKNFVTKVSVGEFVGEGEGKSKKISKKNAAIAVLEELKKLPPLPAVERVKPRIK 191
Query: 131 E-TGAVVPTFEDKLMG---NPVGWLQELCMSRFWPPPSYHAENDDNVNRRLPHERHFTII 186
+ T +V G NP+ L ++ ++ P Y + R LP R F +
Sbjct: 192 KKTKPIVKPQTSPEYGQGINPISRLAQIQQAKKEKEPEYTLLTE----RGLPRRREFVMQ 247
Query: 187 CTLLKRREVGTGKSKKLAKRQAAYKMWQALQDNPPES 223
+ GTG +KK+AKR AA M + L P++
Sbjct: 248 VKVGNHTAEGTGTNKKVAKRNAAENMLEILGFKVPQA 284
>AY529074-1|AAS76636.1| 502|Homo sapiens staufen protein T5 variant
protein.
Length = 502
Score = 42.7 bits (96), Expect = 0.002
Identities = 53/217 (24%), Positives = 87/217 (40%), Gaps = 21/217 (9%)
Query: 19 RRYQTRPKPNNLQRLPLDEAAKREMESLPTKTPVSVLQELLARRGTVPKYE---LVQI-- 73
R Q P P L+ + E E+L K+ +S + E+ +R +E L Q+
Sbjct: 77 RILQNEPLPERLEV----NGRESEEENL-NKSEISQVFEIALKRNLPVNFESFPLKQVAR 131
Query: 74 -EGMIHEPTFRYRVTVADLVAMGTGRXXXXXXXXXXXXLLDKLTGATP--ADQTTNGNVP 130
G H F +V+V + V G G+ +L++L P A + +
Sbjct: 132 ESGPPHMKNFVTKVSVGEFVGEGEGKSKKISKKNAAIAVLEELKKLPPLPAVERVKPRIK 191
Query: 131 E-TGAVVPTFEDKLMG---NPVGWLQELCMSRFWPPPSYHAENDDNVNRRLPHERHFTII 186
+ T +V G NP+ L ++ ++ P Y + R LP R F +
Sbjct: 192 KKTKPIVKPQTSPEYGQGINPISRLAQIQQAKKEKEPEYTLLTE----RGLPRRREFVMQ 247
Query: 187 CTLLKRREVGTGKSKKLAKRQAAYKMWQALQDNPPES 223
+ GTG +KK+AKR AA M + L P++
Sbjct: 248 VKVGNHTAEGTGTNKKVAKRNAAENMLEILGFKVPQA 284
>AL133174-5|CAI42820.1| 502|Homo sapiens staufen, RNA binding
protein, homolog 1 (Drosophila) protein.
Length = 502
Score = 42.7 bits (96), Expect = 0.002
Identities = 53/217 (24%), Positives = 87/217 (40%), Gaps = 21/217 (9%)
Query: 19 RRYQTRPKPNNLQRLPLDEAAKREMESLPTKTPVSVLQELLARRGTVPKYE---LVQI-- 73
R Q P P L+ + E E+L K+ +S + E+ +R +E L Q+
Sbjct: 77 RILQNEPLPERLEV----NGRESEEENL-NKSEISQVFEIALKRNLPVNFESFPLKQVAR 131
Query: 74 -EGMIHEPTFRYRVTVADLVAMGTGRXXXXXXXXXXXXLLDKLTGATP--ADQTTNGNVP 130
G H F +V+V + V G G+ +L++L P A + +
Sbjct: 132 ESGPPHMKNFVTKVSVGEFVGEGEGKSKKISKKNAAIAVLEELKKLPPLPAVERVKPRIK 191
Query: 131 E-TGAVVPTFEDKLMG---NPVGWLQELCMSRFWPPPSYHAENDDNVNRRLPHERHFTII 186
+ T +V G NP+ L ++ ++ P Y + R LP R F +
Sbjct: 192 KKTKPIVKPQTSPEYGQGINPISRLAQIQQAKKEKEPEYTLLTE----RGLPRRREFVMQ 247
Query: 187 CTLLKRREVGTGKSKKLAKRQAAYKMWQALQDNPPES 223
+ GTG +KK+AKR AA M + L P++
Sbjct: 248 VKVGNHTAEGTGTNKKVAKRNAAENMLEILGFKVPQA 284
>U75503-3|AAB97117.1| 1181|Homo sapiens RNA adenosine deaminase
protein.
Length = 1181
Score = 36.3 bits (80), Expect = 0.16
Identities = 30/110 (27%), Positives = 44/110 (40%), Gaps = 5/110 (4%)
Query: 49 KTPVSVLQELLARRGTVPKYELVQIEGMIHEPTFRYRVTV-ADLVAMGTGRXXXXXXXXX 107
K+PV+ L E + + G ++ L+ EG HEP F+Y V V A +
Sbjct: 613 KSPVTTLLECMHKLGNSCEFRLLSKEGPAHEPKFQYCVAVGAQTFPSVSAPSKKVAKQMA 672
Query: 108 XXXLLDKLTGATPADQTTNGNVPETGAVVPTFEDKLMGNPVGWLQELCMS 157
+ L G ++ V + G +V L NPVG L E S
Sbjct: 673 AEEAMKALHGEATNSMASDNQVRKIGELV----RYLNTNPVGGLLEYARS 718
>X98559-2|CAA67169.1| 931|Homo sapiens dsRNA adenosine deaminase
protein.
Length = 931
Score = 35.1 bits (77), Expect = 0.38
Identities = 16/40 (40%), Positives = 24/40 (60%)
Query: 49 KTPVSVLQELLARRGTVPKYELVQIEGMIHEPTFRYRVTV 88
K+PV+ L E + + G ++ L+ EG HEP F+Y V V
Sbjct: 318 KSPVTTLLECMHKLGNSCEFRLLSKEGPAHEPKFQYCVAV 357
>X98559-1|CAA67170.1| 1221|Homo sapiens dsRNA adenosine deaminase
protein.
Length = 1221
Score = 35.1 bits (77), Expect = 0.38
Identities = 16/40 (40%), Positives = 24/40 (60%)
Query: 49 KTPVSVLQELLARRGTVPKYELVQIEGMIHEPTFRYRVTV 88
K+PV+ L E + + G ++ L+ EG HEP F+Y V V
Sbjct: 608 KSPVTTLLECMHKLGNSCEFRLLSKEGPAHEPKFQYCVAV 647
>X79449-1|CAA55968.1| 1226|Homo sapiens IFI-4 protein.
Length = 1226
Score = 35.1 bits (77), Expect = 0.38
Identities = 16/40 (40%), Positives = 24/40 (60%)
Query: 49 KTPVSVLQELLARRGTVPKYELVQIEGMIHEPTFRYRVTV 88
K+PV+ L E + + G ++ L+ EG HEP F+Y V V
Sbjct: 613 KSPVTTLLECMHKLGNSCEFRLLSKEGPAHEPKFQYCVAV 652
>X79448-1|CAA55967.1| 931|Homo sapiens IFI-4 protein.
Length = 931
Score = 35.1 bits (77), Expect = 0.38
Identities = 16/40 (40%), Positives = 24/40 (60%)
Query: 49 KTPVSVLQELLARRGTVPKYELVQIEGMIHEPTFRYRVTV 88
K+PV+ L E + + G ++ L+ EG HEP F+Y V V
Sbjct: 318 KSPVTTLLECMHKLGNSCEFRLLSKEGPAHEPKFQYCVAV 357
>U75503-2|AAB97116.1| 1200|Homo sapiens RNA adenosine deaminase
protein.
Length = 1200
Score = 35.1 bits (77), Expect = 0.38
Identities = 16/40 (40%), Positives = 24/40 (60%)
Query: 49 KTPVSVLQELLARRGTVPKYELVQIEGMIHEPTFRYRVTV 88
K+PV+ L E + + G ++ L+ EG HEP F+Y V V
Sbjct: 613 KSPVTTLLECMHKLGNSCEFRLLSKEGPAHEPKFQYCVAV 652
>U75503-1|AAB97118.1| 1226|Homo sapiens RNA adenosine deaminase
protein.
Length = 1226
Score = 35.1 bits (77), Expect = 0.38
Identities = 16/40 (40%), Positives = 24/40 (60%)
Query: 49 KTPVSVLQELLARRGTVPKYELVQIEGMIHEPTFRYRVTV 88
K+PV+ L E + + G ++ L+ EG HEP F+Y V V
Sbjct: 613 KSPVTTLLECMHKLGNSCEFRLLSKEGPAHEPKFQYCVAV 652
>U18121-1|AAC13782.1| 1226|Homo sapiens p136 protein.
Length = 1226
Score = 35.1 bits (77), Expect = 0.38
Identities = 16/40 (40%), Positives = 24/40 (60%)
Query: 49 KTPVSVLQELLARRGTVPKYELVQIEGMIHEPTFRYRVTV 88
K+PV+ L E + + G ++ L+ EG HEP F+Y V V
Sbjct: 613 KSPVTTLLECMHKLGNSCEFRLLSKEGPAHEPKFQYCVAV 652
>U10439-1|AAB06697.1| 1226|Homo sapiens double-stranded RNA
adenosine deaminase protein.
Length = 1226
Score = 35.1 bits (77), Expect = 0.38
Identities = 16/40 (40%), Positives = 24/40 (60%)
Query: 49 KTPVSVLQELLARRGTVPKYELVQIEGMIHEPTFRYRVTV 88
K+PV+ L E + + G ++ L+ EG HEP F+Y V V
Sbjct: 613 KSPVTTLLECMHKLGNSCEFRLLSKEGPAHEPKFQYCVAV 652
>BX640741-1|CAE45853.1| 1278|Homo sapiens hypothetical protein
protein.
Length = 1278
Score = 35.1 bits (77), Expect = 0.38
Identities = 16/40 (40%), Positives = 24/40 (60%)
Query: 49 KTPVSVLQELLARRGTVPKYELVQIEGMIHEPTFRYRVTV 88
K+PV+ L E + + G ++ L+ EG HEP F+Y V V
Sbjct: 644 KSPVTTLLECMHKLGNSCEFRLLSKEGPAHEPKFQYCVAV 683
>BX538232-1|CAD98075.1| 1257|Homo sapiens hypothetical protein
protein.
Length = 1257
Score = 35.1 bits (77), Expect = 0.38
Identities = 16/40 (40%), Positives = 24/40 (60%)
Query: 49 KTPVSVLQELLARRGTVPKYELVQIEGMIHEPTFRYRVTV 88
K+PV+ L E + + G ++ L+ EG HEP F+Y V V
Sbjct: 644 KSPVTTLLECMHKLGNSCEFRLLSKEGPAHEPKFQYCVAV 683
>BC038227-1|AAH38227.1| 1226|Homo sapiens adenosine deaminase,
RNA-specific protein.
Length = 1226
Score = 35.1 bits (77), Expect = 0.38
Identities = 16/40 (40%), Positives = 24/40 (60%)
Query: 49 KTPVSVLQELLARRGTVPKYELVQIEGMIHEPTFRYRVTV 88
K+PV+ L E + + G ++ L+ EG HEP F+Y V V
Sbjct: 613 KSPVTTLLECMHKLGNSCEFRLLSKEGPAHEPKFQYCVAV 652
>AL691488-2|CAI17376.1| 1226|Homo sapiens adenosine deaminase,
RNA-specific protein.
Length = 1226
Score = 35.1 bits (77), Expect = 0.38
Identities = 16/40 (40%), Positives = 24/40 (60%)
Query: 49 KTPVSVLQELLARRGTVPKYELVQIEGMIHEPTFRYRVTV 88
K+PV+ L E + + G ++ L+ EG HEP F+Y V V
Sbjct: 613 KSPVTTLLECMHKLGNSCEFRLLSKEGPAHEPKFQYCVAV 652
>AL691488-1|CAI17375.1| 931|Homo sapiens adenosine deaminase,
RNA-specific protein.
Length = 931
Score = 35.1 bits (77), Expect = 0.38
Identities = 16/40 (40%), Positives = 24/40 (60%)
Query: 49 KTPVSVLQELLARRGTVPKYELVQIEGMIHEPTFRYRVTV 88
K+PV+ L E + + G ++ L+ EG HEP F+Y V V
Sbjct: 318 KSPVTTLLECMHKLGNSCEFRLLSKEGPAHEPKFQYCVAV 357
>AL606500-2|CAH71908.1| 1226|Homo sapiens adenosine deaminase,
RNA-specific protein.
Length = 1226
Score = 35.1 bits (77), Expect = 0.38
Identities = 16/40 (40%), Positives = 24/40 (60%)
Query: 49 KTPVSVLQELLARRGTVPKYELVQIEGMIHEPTFRYRVTV 88
K+PV+ L E + + G ++ L+ EG HEP F+Y V V
Sbjct: 613 KSPVTTLLECMHKLGNSCEFRLLSKEGPAHEPKFQYCVAV 652
>AL606500-1|CAH71907.1| 931|Homo sapiens adenosine deaminase,
RNA-specific protein.
Length = 931
Score = 35.1 bits (77), Expect = 0.38
Identities = 16/40 (40%), Positives = 24/40 (60%)
Query: 49 KTPVSVLQELLARRGTVPKYELVQIEGMIHEPTFRYRVTV 88
K+PV+ L E + + G ++ L+ EG HEP F+Y V V
Sbjct: 318 KSPVTTLLECMHKLGNSCEFRLLSKEGPAHEPKFQYCVAV 357
>AL592078-4|CAI16185.1| 1226|Homo sapiens adenosine deaminase,
RNA-specific protein.
Length = 1226
Score = 35.1 bits (77), Expect = 0.38
Identities = 16/40 (40%), Positives = 24/40 (60%)
Query: 49 KTPVSVLQELLARRGTVPKYELVQIEGMIHEPTFRYRVTV 88
K+PV+ L E + + G ++ L+ EG HEP F+Y V V
Sbjct: 613 KSPVTTLLECMHKLGNSCEFRLLSKEGPAHEPKFQYCVAV 652
>AL592078-2|CAI16183.1| 931|Homo sapiens adenosine deaminase,
RNA-specific protein.
Length = 931
Score = 35.1 bits (77), Expect = 0.38
Identities = 16/40 (40%), Positives = 24/40 (60%)
Query: 49 KTPVSVLQELLARRGTVPKYELVQIEGMIHEPTFRYRVTV 88
K+PV+ L E + + G ++ L+ EG HEP F+Y V V
Sbjct: 318 KSPVTTLLECMHKLGNSCEFRLLSKEGPAHEPKFQYCVAV 357
>AB209891-1|BAD93128.1| 1244|Homo sapiens adenosine deaminase,
RNA-specific isoform ADAR-a variant protein.
Length = 1244
Score = 35.1 bits (77), Expect = 0.38
Identities = 16/40 (40%), Positives = 24/40 (60%)
Query: 49 KTPVSVLQELLARRGTVPKYELVQIEGMIHEPTFRYRVTV 88
K+PV+ L E + + G ++ L+ EG HEP F+Y V V
Sbjct: 631 KSPVTTLLECMHKLGNSCEFRLLSKEGPAHEPKFQYCVAV 670
>X63753-1|CAA45282.1| 1523|Homo sapiens son-a protein.
Length = 1523
Score = 33.1 bits (72), Expect = 1.5
Identities = 25/89 (28%), Positives = 38/89 (42%), Gaps = 6/89 (6%)
Query: 146 NPVGWLQELCMSRFWPPPSYHAENDDNVNRRLPHERH--FTIICTLLKRREVGTGKSKKL 203
+PV L E+C R W PP + +D + H +H F ++ + +KK
Sbjct: 1364 HPVSALMEICNKRRWQPPEFLLVHDSGPD----HRKHFLFRVLINGSAYQPSFASPNKKH 1419
Query: 204 AKRQAAYKMWQALQDNPPESFQNDDEGGV 232
AK AA + QA+ P + N GV
Sbjct: 1420 AKATAATVVLQAMGLVPKDLMANALASGV 1448
>BC017732-1|AAH17732.1| 672|Homo sapiens spermatid perinuclear RNA
binding protein protein.
Length = 672
Score = 31.9 bits (69), Expect = 3.5
Identities = 28/91 (30%), Positives = 35/91 (38%), Gaps = 5/91 (5%)
Query: 49 KTPVSVLQELLARRGTVPKYELVQIEGMIHEPTFRYRVTVADLVAMGTGRXXXXXXXXXX 108
K PV L E RRG KYEL+ G H+ F V V G G
Sbjct: 512 KNPVMELNE--KRRGL--KYELISETGGSHDKRFVMEVEVDGQKFRGAGPNKKVAKASAA 567
Query: 109 XXLLDKL-TGATPADQTTNGNVPETGAVVPT 138
L+KL +G A+ +P+ VV T
Sbjct: 568 LAALEKLFSGPNAANNKKKKIIPQAKGVVNT 598
>BC002693-1|AAH02693.2| 615|Homo sapiens STRBP protein protein.
Length = 615
Score = 31.9 bits (69), Expect = 3.5
Identities = 28/91 (30%), Positives = 35/91 (38%), Gaps = 5/91 (5%)
Query: 49 KTPVSVLQELLARRGTVPKYELVQIEGMIHEPTFRYRVTVADLVAMGTGRXXXXXXXXXX 108
K PV L E RRG KYEL+ G H+ F V V G G
Sbjct: 455 KNPVMELNE--KRRGL--KYELISETGGSHDKRFVMEVEVDGQKFRGAGPNKKVAKASAA 510
Query: 109 XXLLDKL-TGATPADQTTNGNVPETGAVVPT 138
L+KL +G A+ +P+ VV T
Sbjct: 511 LAALEKLFSGPNAANNKKKKIIPQAKGVVNT 541
>AL365338-5|CAH70300.1| 672|Homo sapiens spermatid perinuclear RNA
binding protein protein.
Length = 672
Score = 31.9 bits (69), Expect = 3.5
Identities = 28/91 (30%), Positives = 35/91 (38%), Gaps = 5/91 (5%)
Query: 49 KTPVSVLQELLARRGTVPKYELVQIEGMIHEPTFRYRVTVADLVAMGTGRXXXXXXXXXX 108
K PV L E RRG KYEL+ G H+ F V V G G
Sbjct: 512 KNPVMELNE--KRRGL--KYELISETGGSHDKRFVMEVEVDGQKFRGAGPNKKVAKASAA 567
Query: 109 XXLLDKL-TGATPADQTTNGNVPETGAVVPT 138
L+KL +G A+ +P+ VV T
Sbjct: 568 LAALEKLFSGPNAANNKKKKIIPQAKGVVNT 598
>AL365338-4|CAH70299.1| 658|Homo sapiens spermatid perinuclear RNA
binding protein protein.
Length = 658
Score = 31.9 bits (69), Expect = 3.5
Identities = 28/91 (30%), Positives = 35/91 (38%), Gaps = 5/91 (5%)
Query: 49 KTPVSVLQELLARRGTVPKYELVQIEGMIHEPTFRYRVTVADLVAMGTGRXXXXXXXXXX 108
K PV L E RRG KYEL+ G H+ F V V G G
Sbjct: 498 KNPVMELNE--KRRGL--KYELISETGGSHDKRFVMEVEVDGQKFRGAGPNKKVAKASAA 553
Query: 109 XXLLDKL-TGATPADQTTNGNVPETGAVVPT 138
L+KL +G A+ +P+ VV T
Sbjct: 554 LAALEKLFSGPNAANNKKKKIIPQAKGVVNT 584
>AK027890-1|BAB55434.1| 672|Homo sapiens protein ( Homo sapiens
cDNA FLJ14984 fis, clone Y79AA1000349, highly similar to
M.musculus Spnr mRNA for RNA binding protein. ).
Length = 672
Score = 31.9 bits (69), Expect = 3.5
Identities = 28/91 (30%), Positives = 35/91 (38%), Gaps = 5/91 (5%)
Query: 49 KTPVSVLQELLARRGTVPKYELVQIEGMIHEPTFRYRVTVADLVAMGTGRXXXXXXXXXX 108
K PV L E RRG KYEL+ G H+ F V V G G
Sbjct: 512 KNPVMELNE--KRRGL--KYELISETGGSHDKRFVMEVEVDGQKFRGAGPNKKVAKASAA 567
Query: 109 XXLLDKL-TGATPADQTTNGNVPETGAVVPT 138
L+KL +G A+ +P+ VV T
Sbjct: 568 LAALEKLFSGPNAANNKKKKIIPQAKGVVNT 598
>AK024285-1|BAB14873.1| 405|Homo sapiens protein ( Homo sapiens
cDNA FLJ14223 fis, clone NT2RP3004013, highly similar to
M.musculus Spnr mRNA for RNA binding protein. ).
Length = 405
Score = 31.9 bits (69), Expect = 3.5
Identities = 28/91 (30%), Positives = 35/91 (38%), Gaps = 5/91 (5%)
Query: 49 KTPVSVLQELLARRGTVPKYELVQIEGMIHEPTFRYRVTVADLVAMGTGRXXXXXXXXXX 108
K PV L E RRG KYEL+ G H+ F V V G G
Sbjct: 245 KNPVMELNE--KRRGL--KYELISETGGSHDKRFVMEVEVDGQKFRGAGPNKKVAKASAA 300
Query: 109 XXLLDKL-TGATPADQTTNGNVPETGAVVPT 138
L+KL +G A+ +P+ VV T
Sbjct: 301 LAALEKLFSGPNAANNKKKKIIPQAKGVVNT 331
>AK002169-1|BAA92120.1| 490|Homo sapiens spermatid perinuclear
RNA-binding protein. protein.
Length = 490
Score = 31.9 bits (69), Expect = 3.5
Identities = 28/91 (30%), Positives = 35/91 (38%), Gaps = 5/91 (5%)
Query: 49 KTPVSVLQELLARRGTVPKYELVQIEGMIHEPTFRYRVTVADLVAMGTGRXXXXXXXXXX 108
K PV L E RRG KYEL+ G H+ F V V G G
Sbjct: 330 KNPVMELNE--KRRGL--KYELISETGGSHDKRFVMEVEVDGQKFRGAGPNKKVAKASAA 385
Query: 109 XXLLDKL-TGATPADQTTNGNVPETGAVVPT 138
L+KL +G A+ +P+ VV T
Sbjct: 386 LAALEKLFSGPNAANNKKKKIIPQAKGVVNT 416
>AF380182-1|AAL34500.1| 147|Homo sapiens SON DNA binding protein
isoform D protein.
Length = 147
Score = 31.9 bits (69), Expect = 3.5
Identities = 23/83 (27%), Positives = 36/83 (43%), Gaps = 6/83 (7%)
Query: 146 NPVGWLQELCMSRFWPPPSYHAENDDNVNRRLPHERH--FTIICTLLKRREVGTGKSKKL 203
+PV L E+C R W PP + +D + H +H F ++ + +KK
Sbjct: 59 HPVSALMEICNKRRWQPPEFLLVHDSGPD----HRKHFLFRVLINGSAYQPSFASPNKKH 114
Query: 204 AKRQAAYKMWQALQDNPPESFQN 226
AK AA + QA+ P + N
Sbjct: 115 AKATAATVVLQAMGLVPKDLMAN 137
>AF380179-1|AAL34497.1| 2140|Homo sapiens SON DNA binding protein
isoform A protein.
Length = 2140
Score = 31.9 bits (69), Expect = 3.5
Identities = 23/83 (27%), Positives = 36/83 (43%), Gaps = 6/83 (7%)
Query: 146 NPVGWLQELCMSRFWPPPSYHAENDDNVNRRLPHERH--FTIICTLLKRREVGTGKSKKL 203
+PV L E+C R W PP + +D + H +H F ++ + +KK
Sbjct: 2052 HPVSALMEICNKRRWQPPEFLLVHDSGPD----HRKHFLFRVLINGSAYQPSFASPNKKH 2107
Query: 204 AKRQAAYKMWQALQDNPPESFQN 226
AK AA + QA+ P + N
Sbjct: 2108 AKATAATVVLQAMGLVPKDLMAN 2130
>AF333337-1|AAK20832.1| 673|Homo sapiens spermatid perinuclear
RNA-binding protein protein.
Length = 673
Score = 31.9 bits (69), Expect = 3.5
Identities = 28/91 (30%), Positives = 35/91 (38%), Gaps = 5/91 (5%)
Query: 49 KTPVSVLQELLARRGTVPKYELVQIEGMIHEPTFRYRVTVADLVAMGTGRXXXXXXXXXX 108
K PV L E RRG KYEL+ G H+ F V V G G
Sbjct: 513 KNPVMELNE--KRRGL--KYELISETGGSHDKRFVMEVEVDGQKFRGAGPNKKVAKASAA 568
Query: 109 XXLLDKL-TGATPADQTTNGNVPETGAVVPT 138
L+KL +G A+ +P+ VV T
Sbjct: 569 LAALEKLFSGPNAANNKKKKIIPQAKGVVNT 599
>BC010169-1|AAH10169.1| 196|Homo sapiens STAU1 protein protein.
Length = 196
Score = 31.1 bits (67), Expect = 6.2
Identities = 15/44 (34%), Positives = 26/44 (59%)
Query: 178 PHERHFTIICTLLKRREVGTGKSKKLAKRQAAYKMWQALQDNPP 221
PH ++F ++ + G GKSKK++K+ AA + + L+ PP
Sbjct: 136 PHMKNFVTKVSVGEFVGEGEGKSKKISKKNAAIAVLEELKKLPP 179
>AL133174-6|CAI42821.1| 199|Homo sapiens staufen, RNA binding
protein, homolog 1 (Drosophila) protein.
Length = 199
Score = 31.1 bits (67), Expect = 6.2
Identities = 15/44 (34%), Positives = 26/44 (59%)
Query: 178 PHERHFTIICTLLKRREVGTGKSKKLAKRQAAYKMWQALQDNPP 221
PH ++F ++ + G GKSKK++K+ AA + + L+ PP
Sbjct: 136 PHMKNFVTKVSVGEFVGEGEGKSKKISKKNAAIAVLEELKKLPP 179
>AK023314-1|BAB14522.1| 206|Homo sapiens protein ( Homo sapiens
cDNA FLJ13252 fis, clone OVARC1000746, weakly similar to
MATERNAL EFFECT PROTEIN STAUFEN. ).
Length = 206
Score = 31.1 bits (67), Expect = 6.2
Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 4/67 (5%)
Query: 146 NPVGWLQELCMSRFWPPPSYHAENDDNVNRRLPHERHFTIICTLLKRREVGTGKSKKLAK 205
NP+ L ++ ++ P Y ++ R +P R F + + GTG +KK+AK
Sbjct: 2 NPISRLAQIQQAKKEKEPDYVLLSE----RGMPRRREFVMQVKVGNEVATGTGPNKKIAK 57
Query: 206 RQAAYKM 212
+ AA M
Sbjct: 58 KNAAEAM 64
>AK001576-1|BAA91766.1| 206|Homo sapiens protein ( Homo sapiens
cDNA FLJ10714 fis, clone NT2RP3000994, weakly similar to
MATERNAL EFFECT PROTEIN STAUFEN. ).
Length = 206
Score = 31.1 bits (67), Expect = 6.2
Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 4/67 (5%)
Query: 146 NPVGWLQELCMSRFWPPPSYHAENDDNVNRRLPHERHFTIICTLLKRREVGTGKSKKLAK 205
NP+ L ++ ++ P Y ++ R +P R F + + GTG +KK+AK
Sbjct: 2 NPISRLAQIQQAKKEKEPDYVLLSE----RGMPRRREFVMQVKVGNEVATGTGPNKKIAK 57
Query: 206 RQAAYKM 212
+ AA M
Sbjct: 58 KNAAEAM 64
Database: human
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 73,234,838
Number of sequences in database: 224,733
Lambda K H
0.315 0.131 0.387
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 53,987,838
Number of Sequences: 224733
Number of extensions: 2352433
Number of successful extensions: 4486
Number of sequences better than 10.0: 68
Number of HSP's better than 10.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 4230
Number of HSP's gapped (non-prelim): 216
length of query: 356
length of database: 73,234,838
effective HSP length: 91
effective length of query: 265
effective length of database: 52,784,135
effective search space: 13987795775
effective search space used: 13987795775
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 66 (30.7 bits)
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