GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA005395-TA|BGIBMGA005395-PA|IPR001159|Double-stranded RNA
binding
         (356 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    26   0.43 
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    23   3.0  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   4.0  
AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.                22   7.0  

>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 26.2 bits (55), Expect = 0.43
 Identities = 17/42 (40%), Positives = 21/42 (50%)

Query: 183 FTIICTLLKRREVGTGKSKKLAKRQAAYKMWQALQDNPPESF 224
           FTI  T+      GTG SKKLAK  A+      L++    SF
Sbjct: 182 FTISVTIDGETFEGTGPSKKLAKAAASKAALAKLRNVHSSSF 223



 Score = 23.4 bits (48), Expect = 3.0
 Identities = 20/59 (33%), Positives = 24/59 (40%), Gaps = 5/59 (8%)

Query: 40 KREMESLPTKTPVSVLQELLARRGTVPKYELVQIEGMIHEPTFRYRVTVADLVAMGTGR 98
          KR     P K  V  L EL  + G V  Y++V   G  H P F   V +      G GR
Sbjct: 27 KRNKNPQP-KNAVCALNEL--KSGAV--YKVVDQTGPTHAPIFTIAVQIDGQTYEGKGR 80



 Score = 23.4 bits (48), Expect = 3.0
 Identities = 12/31 (38%), Positives = 17/31 (54%)

Query: 179 HERHFTIICTLLKRREVGTGKSKKLAKRQAA 209
           H   FTI   +  +   G G++KK+AK  AA
Sbjct: 60  HAPIFTIAVQIDGQTYEGKGRTKKMAKHAAA 90


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
          receptor 1 protein.
          Length = 953

 Score = 23.4 bits (48), Expect = 3.0
 Identities = 10/21 (47%), Positives = 15/21 (71%)

Query: 42 EMESLPTKTPVSVLQELLARR 62
          EM+S P KT +SV + L+ R+
Sbjct: 75 EMDSNPIKTALSVCKSLIERQ 95


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 23.0 bits (47), Expect = 4.0
 Identities = 8/17 (47%), Positives = 12/17 (70%)

Query: 236 YADLKDSKISTLTTSHS 252
           Y  ++DSK+ TL  SH+
Sbjct: 589 YYKIRDSKVKTLDASHN 605


>AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.
          Length = 316

 Score = 22.2 bits (45), Expect = 7.0
 Identities = 7/24 (29%), Positives = 13/24 (54%)

Query: 316 CLVQLSTLPVAVCHGAGLTSKDAQ 339
           C+++  T  +  CH AG+   D +
Sbjct: 159 CILKSITCALQFCHNAGIVHADVK 182


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.315    0.131    0.387 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 106,655
Number of Sequences: 429
Number of extensions: 5001
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 3
Number of HSP's gapped (non-prelim): 6
length of query: 356
length of database: 140,377
effective HSP length: 58
effective length of query: 298
effective length of database: 115,495
effective search space: 34417510
effective search space used: 34417510
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 44 (21.8 bits)