GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA005394-TA|BGIBMGA005394-PA|undefined
         (213 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    22   3.8  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   3.8  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   3.8  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   3.8  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                22   5.0  

>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 10/34 (29%), Positives = 19/34 (55%)

Query: 127 DLVAEKIEAVKENDDDSITEEMPEPRTSDDPKGS 160
           D+VA+  E ++      I E +P+    +DP+G+
Sbjct: 345 DVVAQNEETLQMIVSMKIMENLPQSGRINDPEGN 378


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 8/41 (19%), Positives = 21/41 (51%)

Query: 37  LHHKRSRAPGVPPVNEDLKEATENLDEIRDRKENERAVSTE 77
           +   ++  P + P N + +++  +  E   +KE + A +T+
Sbjct: 762 MSRNKALLPVIKPANVNKEQSPNSTKETTPKKERKTATTTQ 802


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 8/19 (42%), Positives = 11/19 (57%)

Query: 31   PESPTELHHKRSRAPGVPP 49
            P SP      + +APG+PP
Sbjct: 1485 PSSPVLSVRTQGQAPGIPP 1503


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 8/19 (42%), Positives = 11/19 (57%)

Query: 31   PESPTELHHKRSRAPGVPP 49
            P SP      + +APG+PP
Sbjct: 1481 PSSPVLSVRTQGQAPGIPP 1499


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 10/43 (23%), Positives = 17/43 (39%)

Query: 26  YRPELPESPTELHHKRSRAPGVPPVNEDLKEATENLDEIRDRK 68
           Y P    SP   H   +  P + P +      T++L  +  R+
Sbjct: 326 YHPHRGSSPHHQHGNHTMGPTMGPPHHHHHHQTQSLQHLHYRQ 368


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.306    0.126    0.355 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 61,647
Number of Sequences: 429
Number of extensions: 2279
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of query: 213
length of database: 140,377
effective HSP length: 55
effective length of query: 158
effective length of database: 116,782
effective search space: 18451556
effective search space used: 18451556
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.5 bits)
S2: 42 (21.0 bits)