GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA005393-TA|BGIBMGA005393-PA|undefined
         (68 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ435332-1|ABD92647.1|  135|Apis mellifera OBP15 protein.              20   3.0  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    19   5.3  

>DQ435332-1|ABD92647.1|  135|Apis mellifera OBP15 protein.
          Length = 135

 Score = 19.8 bits (39), Expect = 3.0
 Identities = 8/28 (28%), Positives = 16/28 (57%)

Query: 32 RTSKNKPLPVPLNQGELSMRGSVSQMYI 59
          +T  NK +   +N G++++     Q+YI
Sbjct: 36 KTGINKQIINDVNDGKINIEDENVQLYI 63


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 19.0 bits (37), Expect = 5.3
 Identities = 10/28 (35%), Positives = 14/28 (50%)

Query: 29  DWLRTSKNKPLPVPLNQGELSMRGSVSQ 56
           DW   + + P  VPL  G L+   + SQ
Sbjct: 432 DWYSLASSWPALVPLALGFLAGELTYSQ 459


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.312    0.126    0.397 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,466
Number of Sequences: 429
Number of extensions: 469
Number of successful extensions: 2
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2
length of query: 68
length of database: 140,377
effective HSP length: 45
effective length of query: 23
effective length of database: 121,072
effective search space:  2784656
effective search space used:  2784656
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.7 bits)
S2: 35 (18.2 bits)