GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA005392-TA|BGIBMGA005392-PA|IPR003185|Proteasome
activator pa28, alpha subunit, IPR003186|Proteasome activator pa28,
beta subunit, IPR009077|Proteasome activator, REGalpha subunit
         (217 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    25   0.55 
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   3.9  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    21   6.8  

>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 25.0 bits (52), Expect = 0.55
 Identities = 8/35 (22%), Positives = 23/35 (65%)

Query: 136 EKQKQHTIPATTPEQREASYRKWLERKRMQNERRK 170
           ++Q QH I A  P+Q++   ++  ++++ Q ++++
Sbjct: 428 QQQTQHVINAQQPQQQQQQQQQQQQQQQQQQQQQQ 462


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 9/21 (42%), Positives = 12/21 (57%)

Query: 62  PPATSNNEPNAKRQRLDSSEL 82
           PP T   E N K+  LDS ++
Sbjct: 317 PPETEEEEENDKKLDLDSIDM 337


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 21.4 bits (43), Expect = 6.8
 Identities = 11/39 (28%), Positives = 19/39 (48%)

Query: 28  PEKIVKLNELLETSNFQNRNLSDVHQDLNIPIPTPPATS 66
           P+  ++L + L     Q + +SD        + TPPA+S
Sbjct: 333 PKYRLELQKRLPWLELQEKPISDSTSTTTETVNTPPASS 371


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.311    0.128    0.360 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 66,658
Number of Sequences: 429
Number of extensions: 3276
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of query: 217
length of database: 140,377
effective HSP length: 55
effective length of query: 162
effective length of database: 116,782
effective search space: 18918684
effective search space used: 18918684
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
S2: 42 (21.0 bits)