GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA005390-TA|BGIBMGA005390-PA|IPR011598|Helix-loop-helix
DNA-binding, IPR001092|Basic helix-loop-helix dimerisation region
bHLH, IPR003650|Orange
         (217 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization prot...    34   9e-04

>DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization protein
           protein.
          Length = 250

 Score = 34.3 bits (75), Expect = 9e-04
 Identities = 19/60 (31%), Positives = 32/60 (53%), Gaps = 2/60 (3%)

Query: 1   MEKRRRARINNCLNELKALILDAMKKDPARHSKLEKADILEMTVKHLEGLRSEGAVSPDK 60
           +EK RRA + NCL +LK L+   +  + +RH+ L      +  +K LE    + AV  ++
Sbjct: 56  LEKNRRAHLRNCLEKLKVLV--PLGPETSRHTTLGLLTKAKRFIKSLEERERKHAVHKEQ 113


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.315    0.132    0.394 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 55,359
Number of Sequences: 429
Number of extensions: 1993
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 2
Number of HSP's gapped (non-prelim): 1
length of query: 217
length of database: 140,377
effective HSP length: 55
effective length of query: 162
effective length of database: 116,782
effective search space: 18918684
effective search space used: 18918684
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 42 (21.0 bits)