GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA005389-TA|BGIBMGA005389-PA|IPR011701|Major facilitator
superfamily MFS_1, IPR007114|Major facilitator superfamily
         (515 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    26   0.86 
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    24   3.5  

>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 25.8 bits (54), Expect = 0.86
 Identities = 16/66 (24%), Positives = 27/66 (40%)

Query: 331 VSNAELSALPYLTAWIGGVVLCTIADWTIAKGWISRLNSMKLWNTVAAFLPAFGILGIAW 390
           V+N  + +L      +G  VL   A W + K WI       +W  V  ++    IL +  
Sbjct: 99  VTNMFIVSLAVADLMVGLAVLPFSATWEVFKVWIFGDLWCSIWLAVDVWMCTASILNLCA 158

Query: 391 AGCDKF 396
              D++
Sbjct: 159 ISLDRY 164


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 23.8 bits (49), Expect = 3.5
 Identities = 10/27 (37%), Positives = 17/27 (62%)

Query: 85  VCEANPVSNTTKPTNGEFNWTEQQRSL 111
           +CEA  + + TKP + E++   QQ+ L
Sbjct: 505 LCEAPALRDNTKPIDMEYSSVAQQQFL 531


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.324    0.138    0.450 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 145,545
Number of Sequences: 429
Number of extensions: 6492
Number of successful extensions: 19
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 18
Number of HSP's gapped (non-prelim): 2
length of query: 515
length of database: 140,377
effective HSP length: 61
effective length of query: 454
effective length of database: 114,208
effective search space: 51850432
effective search space used: 51850432
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 46 (22.6 bits)