GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA005388-TA|BGIBMGA005388-PA|IPR002794|Protein of unknown
function DUF92, transmembrane
         (145 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    25   0.42 
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            22   3.0  
DQ485319-1|ABF21078.1|  175|Apis mellifera icarapin variant 2 pr...    21   5.2  
DQ485318-1|ABF21077.1|  223|Apis mellifera icarapin variant 1 pr...    21   5.2  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    21   5.2  
AY939856-1|AAX33236.1|  223|Apis mellifera venom carbohydrate-ri...    21   5.2  
AY897570-1|AAW81036.1|  223|Apis mellifera venom protein 2 protein.    21   5.2  
AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II ...    21   6.9  

>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 24.6 bits (51), Expect = 0.42
 Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 5/47 (10%)

Query: 81  GTVFSGLGGFVIGLSQYFVLYLFSDKSSWDYAPPQWPIILMGTISGL 127
           GT+   +GGFV     +F+LYL     +  + P + P ILM  ++ L
Sbjct: 306 GTLAVVVGGFVACWLPFFILYL-----ATPFVPVEPPDILMPALTWL 347


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 21.8 bits (44), Expect = 3.0
 Identities = 8/32 (25%), Positives = 17/32 (53%)

Query: 25  DYRSSWLSIGILGVFACCNGDTWASEIGTVFS 56
           D+ +  ++IG+ G         W S++ T++S
Sbjct: 191 DFLNDLVAIGVAGFRVDAAKHMWPSDLRTIYS 222


>DQ485319-1|ABF21078.1|  175|Apis mellifera icarapin variant 2
          precursor protein.
          Length = 175

 Score = 21.0 bits (42), Expect = 5.2
 Identities = 5/12 (41%), Positives = 8/12 (66%)

Query: 63 ITSWKKVPRGTN 74
          + +W K+P G N
Sbjct: 67 VVNWNKIPEGAN 78


>DQ485318-1|ABF21077.1|  223|Apis mellifera icarapin variant 1
           precursor protein.
          Length = 223

 Score = 21.0 bits (42), Expect = 5.2
 Identities = 5/12 (41%), Positives = 8/12 (66%)

Query: 63  ITSWKKVPRGTN 74
           + +W K+P G N
Sbjct: 115 VVNWNKIPEGAN 126


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 21.0 bits (42), Expect = 5.2
 Identities = 6/13 (46%), Positives = 10/13 (76%)

Query: 35  ILGVFACCNGDTW 47
           +L ++ACC  DT+
Sbjct: 227 VLKMYACCPNDTY 239


>AY939856-1|AAX33236.1|  223|Apis mellifera venom carbohydrate-rich
           protein precursor protein.
          Length = 223

 Score = 21.0 bits (42), Expect = 5.2
 Identities = 5/12 (41%), Positives = 8/12 (66%)

Query: 63  ITSWKKVPRGTN 74
           + +W K+P G N
Sbjct: 115 VVNWNKIPEGAN 126


>AY897570-1|AAW81036.1|  223|Apis mellifera venom protein 2 protein.
          Length = 223

 Score = 21.0 bits (42), Expect = 5.2
 Identities = 5/12 (41%), Positives = 8/12 (66%)

Query: 63  ITSWKKVPRGTN 74
           + +W K+P G N
Sbjct: 115 VVNWNKIPEGAN 126


>AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II
           protein.
          Length = 190

 Score = 20.6 bits (41), Expect = 6.9
 Identities = 7/20 (35%), Positives = 10/20 (50%)

Query: 100 LYLFSDKSSWDYAPPQWPII 119
           LY      S+DY  P+W  +
Sbjct: 120 LYAQIKTGSYDYPSPEWDTV 139


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.322    0.141    0.444 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 40,074
Number of Sequences: 429
Number of extensions: 1573
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of query: 145
length of database: 140,377
effective HSP length: 52
effective length of query: 93
effective length of database: 118,069
effective search space: 10980417
effective search space used: 10980417
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.4 bits)
S2: 40 (20.2 bits)