GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA005384-TA|BGIBMGA005384-PA|IPR007918|Mitochondrial
distribution and morphology family 35/apoptosis
         (82 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate r...    21   2.0  
AB006152-1|BAA24504.1|  178|Apis mellifera inositol 1,4,5-tripho...    21   2.0  
DQ435324-1|ABD92639.1|  152|Apis mellifera OBP3 protein.               20   3.5  
DQ855482-1|ABH88169.1|  116|Apis mellifera chemosensory protein ...    20   4.6  
AJ973399-1|CAJ01446.1|  116|Apis mellifera hypothetical protein ...    20   4.6  
AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    19   8.0  
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    19   8.0  

>DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate
           receptor protein.
          Length = 322

 Score = 21.0 bits (42), Expect = 2.0
 Identities = 12/38 (31%), Positives = 19/38 (50%)

Query: 35  SVCAGIFKIYQECVKNAMKQQSIDFKEIDKDILGTENE 72
           S    IFK   +  + A    S+  K ID +++GT+ E
Sbjct: 68  SCLLSIFKQEFDETERASGDLSLGQKTIDLELIGTQAE 105


>AB006152-1|BAA24504.1|  178|Apis mellifera inositol
          1,4,5-triphosphate recepter protein.
          Length = 178

 Score = 21.0 bits (42), Expect = 2.0
 Identities = 12/38 (31%), Positives = 19/38 (50%)

Query: 35 SVCAGIFKIYQECVKNAMKQQSIDFKEIDKDILGTENE 72
          S    IFK   +  + A    S+  K ID +++GT+ E
Sbjct: 36 SCLLSIFKQEFDETERASGDLSLGQKTIDLELIGTQAE 73


>DQ435324-1|ABD92639.1|  152|Apis mellifera OBP3 protein.
          Length = 152

 Score = 20.2 bits (40), Expect = 3.5
 Identities = 9/24 (37%), Positives = 13/24 (54%)

Query: 31  DQDDSVCAGIFKIYQECVKNAMKQ 54
           D D  +   I KI ++CV NA  +
Sbjct: 85  DMDMDLKDSIRKIIRQCVDNAKNE 108


>DQ855482-1|ABH88169.1|  116|Apis mellifera chemosensory protein 1
          protein.
          Length = 116

 Score = 19.8 bits (39), Expect = 4.6
 Identities = 6/19 (31%), Positives = 13/19 (68%)

Query: 6  EECTDLKKKYDDCFNTWFS 24
          ++CT+++K+  D    WF+
Sbjct: 76 KKCTEIQKQNLDKLAEWFT 94


>AJ973399-1|CAJ01446.1|  116|Apis mellifera hypothetical protein
          protein.
          Length = 116

 Score = 19.8 bits (39), Expect = 4.6
 Identities = 6/19 (31%), Positives = 13/19 (68%)

Query: 6  EECTDLKKKYDDCFNTWFS 24
          ++CT+++K+  D    WF+
Sbjct: 76 KKCTEIQKQNLDKLAEWFT 94


>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 19.0 bits (37), Expect = 8.0
 Identities = 5/14 (35%), Positives = 11/14 (78%)

Query: 44  YQECVKNAMKQQSI 57
           YQ+C+   MK++++
Sbjct: 167 YQKCLAMGMKREAV 180


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 19.0 bits (37), Expect = 8.0
 Identities = 5/14 (35%), Positives = 11/14 (78%)

Query: 44  YQECVKNAMKQQSI 57
           YQ+C+   MK++++
Sbjct: 167 YQKCLAMGMKREAV 180


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.315    0.133    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,560
Number of Sequences: 429
Number of extensions: 919
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of query: 82
length of database: 140,377
effective HSP length: 47
effective length of query: 35
effective length of database: 120,214
effective search space:  4207490
effective search space used:  4207490
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (19.7 bits)
S2: 37 (19.0 bits)