Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA005383-TA|BGIBMGA005383-PA|IPR001525|C-5
cytosine-specific DNA methylase
(50 letters)
Database: human
224,733 sequences; 73,234,838 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X63692-1|CAA45219.1| 1616|Homo sapiens DNA (cytosine-5-)-methylt... 84 8e-17
BC126227-1|AAI26228.1| 1632|Homo sapiens DNMT1 protein protein. 84 8e-17
BC092517-1|AAH92517.1| 1511|Homo sapiens DNMT1 protein protein. 84 8e-17
AF180682-1|AAF23609.1| 1280|Homo sapiens DNA (cytosine-5)-methyl... 84 8e-17
AB209413-1|BAD92650.1| 1606|Homo sapiens DNA (cytosine-5-)-methy... 84 8e-17
CR542282-1|CAG47077.1| 313|Homo sapiens alpha; complete cds, wi... 27 9.6
CR533517-1|CAG38548.1| 313|Homo sapiens alpha; complete cds, in... 27 9.6
BC008885-1|AAH08885.1| 313|Homo sapiens small glutamine-rich te... 27 9.6
BC005165-1|AAH05165.1| 313|Homo sapiens small glutamine-rich te... 27 9.6
BC002989-1|AAH02989.2| 313|Homo sapiens small glutamine-rich te... 27 9.6
BC000390-1|AAH00390.1| 313|Homo sapiens small glutamine-rich te... 27 9.6
AJ223828-1|CAA11565.1| 313|Homo sapiens small glutamine-rich te... 27 9.6
AJ133129-1|CAB39725.1| 313|Homo sapiens small glutamine-rich te... 27 9.6
AF408399-1|AAL01051.1| 313|Homo sapiens TPR-containing co-chape... 27 9.6
AF368279-1|AAP29457.1| 313|Homo sapiens small glutamine rich pr... 27 9.6
AC006538-2|AAD13117.1| 313|Homo sapiens small glutamine-rich te... 27 9.6
>X63692-1|CAA45219.1| 1616|Homo sapiens DNA
(cytosine-5-)-methyltransferase protein.
Length = 1616
Score = 83.8 bits (198), Expect = 8e-17
Identities = 36/43 (83%), Positives = 39/43 (90%)
Query: 1 MGKQGRVLHPDQHRVVSVRECARSQGFPDTYLFAGSVQDKHRQ 43
MGKQGRVLHP+QHRVVSVRECARSQGFPDTY G++ DKHRQ
Sbjct: 1533 MGKQGRVLHPEQHRVVSVRECARSQGFPDTYRLFGNILDKHRQ 1575
>BC126227-1|AAI26228.1| 1632|Homo sapiens DNMT1 protein protein.
Length = 1632
Score = 83.8 bits (198), Expect = 8e-17
Identities = 36/43 (83%), Positives = 39/43 (90%)
Query: 1 MGKQGRVLHPDQHRVVSVRECARSQGFPDTYLFAGSVQDKHRQ 43
MGKQGRVLHP+QHRVVSVRECARSQGFPDTY G++ DKHRQ
Sbjct: 1549 MGKQGRVLHPEQHRVVSVRECARSQGFPDTYRLFGNILDKHRQ 1591
>BC092517-1|AAH92517.1| 1511|Homo sapiens DNMT1 protein protein.
Length = 1511
Score = 83.8 bits (198), Expect = 8e-17
Identities = 36/43 (83%), Positives = 39/43 (90%)
Query: 1 MGKQGRVLHPDQHRVVSVRECARSQGFPDTYLFAGSVQDKHRQ 43
MGKQGRVLHP+QHRVVSVRECARSQGFPDTY G++ DKHRQ
Sbjct: 1428 MGKQGRVLHPEQHRVVSVRECARSQGFPDTYRLFGNILDKHRQ 1470
>AF180682-1|AAF23609.1| 1280|Homo sapiens DNA
(cytosine-5)-methyltransferase protein.
Length = 1280
Score = 83.8 bits (198), Expect = 8e-17
Identities = 36/43 (83%), Positives = 39/43 (90%)
Query: 1 MGKQGRVLHPDQHRVVSVRECARSQGFPDTYLFAGSVQDKHRQ 43
MGKQGRVLHP+QHRVVSVRECARSQGFPDTY G++ DKHRQ
Sbjct: 1197 MGKQGRVLHPEQHRVVSVRECARSQGFPDTYRLFGNILDKHRQ 1239
>AB209413-1|BAD92650.1| 1606|Homo sapiens DNA
(cytosine-5-)-methyltransferase 1 variant protein.
Length = 1606
Score = 83.8 bits (198), Expect = 8e-17
Identities = 36/43 (83%), Positives = 39/43 (90%)
Query: 1 MGKQGRVLHPDQHRVVSVRECARSQGFPDTYLFAGSVQDKHRQ 43
MGKQGRVLHP+QHRVVSVRECARSQGFPDTY G++ DKHRQ
Sbjct: 1523 MGKQGRVLHPEQHRVVSVRECARSQGFPDTYRLFGNILDKHRQ 1565
>CR542282-1|CAG47077.1| 313|Homo sapiens alpha; complete cds,
without stopcodon. protein.
Length = 313
Score = 27.1 bits (57), Expect = 9.6
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 21 CARSQGFPDTYLFAGSVQDKHRQGCINPA 49
C R+ + +AG+VQD R CI+PA
Sbjct: 129 CNRAAAYSKLGNYAGAVQDCERAICIDPA 157
>CR533517-1|CAG38548.1| 313|Homo sapiens alpha; complete cds, incl.
stopcodon. protein.
Length = 313
Score = 27.1 bits (57), Expect = 9.6
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 21 CARSQGFPDTYLFAGSVQDKHRQGCINPA 49
C R+ + +AG+VQD R CI+PA
Sbjct: 129 CNRAAAYSKLGNYAGAVQDCERAICIDPA 157
>BC008885-1|AAH08885.1| 313|Homo sapiens small glutamine-rich
tetratricopeptide repeat (TPR)-containing, alpha
protein.
Length = 313
Score = 27.1 bits (57), Expect = 9.6
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 21 CARSQGFPDTYLFAGSVQDKHRQGCINPA 49
C R+ + +AG+VQD R CI+PA
Sbjct: 129 CNRAAAYSKLGNYAGAVQDCERAICIDPA 157
>BC005165-1|AAH05165.1| 313|Homo sapiens small glutamine-rich
tetratricopeptide repeat (TPR)-containing, alpha
protein.
Length = 313
Score = 27.1 bits (57), Expect = 9.6
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 21 CARSQGFPDTYLFAGSVQDKHRQGCINPA 49
C R+ + +AG+VQD R CI+PA
Sbjct: 129 CNRAAAYSKLGNYAGAVQDCERAICIDPA 157
>BC002989-1|AAH02989.2| 313|Homo sapiens small glutamine-rich
tetratricopeptide repeat (TPR)-containing, alpha
protein.
Length = 313
Score = 27.1 bits (57), Expect = 9.6
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 21 CARSQGFPDTYLFAGSVQDKHRQGCINPA 49
C R+ + +AG+VQD R CI+PA
Sbjct: 129 CNRAAAYSKLGNYAGAVQDCERAICIDPA 157
>BC000390-1|AAH00390.1| 313|Homo sapiens small glutamine-rich
tetratricopeptide repeat (TPR)-containing, alpha
protein.
Length = 313
Score = 27.1 bits (57), Expect = 9.6
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 21 CARSQGFPDTYLFAGSVQDKHRQGCINPA 49
C R+ + +AG+VQD R CI+PA
Sbjct: 129 CNRAAAYSKLGNYAGAVQDCERAICIDPA 157
>AJ223828-1|CAA11565.1| 313|Homo sapiens small glutamine-rich
tetratricopeptide (SGT) protein.
Length = 313
Score = 27.1 bits (57), Expect = 9.6
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 21 CARSQGFPDTYLFAGSVQDKHRQGCINPA 49
C R+ + +AG+VQD R CI+PA
Sbjct: 129 CNRAAAYSKLGNYAGAVQDCERAICIDPA 157
>AJ133129-1|CAB39725.1| 313|Homo sapiens small glutamine-rich
tetratricopeptide repeat containing protein protein.
Length = 313
Score = 27.1 bits (57), Expect = 9.6
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 21 CARSQGFPDTYLFAGSVQDKHRQGCINPA 49
C R+ + +AG+VQD R CI+PA
Sbjct: 129 CNRAAAYSKLGNYAGAVQDCERAICIDPA 157
>AF408399-1|AAL01051.1| 313|Homo sapiens TPR-containing
co-chaperone protein.
Length = 313
Score = 27.1 bits (57), Expect = 9.6
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 21 CARSQGFPDTYLFAGSVQDKHRQGCINPA 49
C R+ + +AG+VQD R CI+PA
Sbjct: 129 CNRAAAYSKLGNYAGAVQDCERAICIDPA 157
>AF368279-1|AAP29457.1| 313|Homo sapiens small glutamine rich
protein with tetratricopeptide repeats 1 protein.
Length = 313
Score = 27.1 bits (57), Expect = 9.6
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 21 CARSQGFPDTYLFAGSVQDKHRQGCINPA 49
C R+ + +AG+VQD R CI+PA
Sbjct: 129 CNRAAAYSKLGNYAGAVQDCERAICIDPA 157
>AC006538-2|AAD13117.1| 313|Homo sapiens small glutamine-rich
tetratricopeptide (SGT) protein.
Length = 313
Score = 27.1 bits (57), Expect = 9.6
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 21 CARSQGFPDTYLFAGSVQDKHRQGCINPA 49
C R+ + +AG+VQD R CI+PA
Sbjct: 129 CNRAAAYSKLGNYAGAVQDCERAICIDPA 157
Database: human
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 73,234,838
Number of sequences in database: 224,733
Lambda K H
0.323 0.136 0.431
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,946,700
Number of Sequences: 224733
Number of extensions: 222099
Number of successful extensions: 246
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 230
Number of HSP's gapped (non-prelim): 16
length of query: 50
length of database: 73,234,838
effective HSP length: 30
effective length of query: 20
effective length of database: 66,492,848
effective search space: 1329856960
effective search space used: 1329856960
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 57 (27.1 bits)
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