GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA005383-TA|BGIBMGA005383-PA|IPR001525|C-5
cytosine-specific DNA methylase
         (50 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    19   4.9  
DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    18   8.5  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    18   8.5  

>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 19.0 bits (37), Expect = 4.9
 Identities = 8/23 (34%), Positives = 11/23 (47%)

Query: 8   LHPDQHRVVSVRECARSQGFPDT 30
           LHP +   V++    R  G P T
Sbjct: 428 LHPRELEAVNLGSACRIHGSPAT 450


>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 18.2 bits (35), Expect = 8.5
 Identities = 6/10 (60%), Positives = 7/10 (70%)

Query: 41  HRQGCINPAA 50
           H+Q CIN  A
Sbjct: 290 HQQSCINRVA 299


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
          protein.
          Length = 352

 Score = 18.2 bits (35), Expect = 8.5
 Identities = 6/12 (50%), Positives = 8/12 (66%)

Query: 3  KQGRVLHPDQHR 14
          + G V HP QH+
Sbjct: 14 RNGGVEHPHQHQ 25


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.323    0.136    0.431 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,423
Number of Sequences: 429
Number of extensions: 305
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of query: 50
length of database: 140,377
effective HSP length: 30
effective length of query: 20
effective length of database: 127,507
effective search space:  2550140
effective search space used:  2550140
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (19.2 bits)
S2: 35 (18.2 bits)