GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA005380-TA|BGIBMGA005380-PA|IPR009003|Peptidase,
trypsin-like serine and cysteine, IPR001254|Peptidase S1 and S6,
chymotrypsin/Hap
         (109 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    44   4e-07
AY897570-1|AAW81036.1|  223|Apis mellifera venom protein 2 protein.    22   1.9  
DQ485319-1|ABF21078.1|  175|Apis mellifera icarapin variant 2 pr...    21   3.3  
DQ485318-1|ABF21077.1|  223|Apis mellifera icarapin variant 1 pr...    21   3.3  
AY939856-1|AAX33236.1|  223|Apis mellifera venom carbohydrate-ri...    21   3.3  

>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 44.0 bits (99), Expect = 4e-07
 Identities = 35/99 (35%), Positives = 53/99 (53%), Gaps = 15/99 (15%)

Query: 8   SNILLKANVTAVKAEKCSESYLNWRKLPKGISDSQICAGDPEGIRDTCQGDSGGPLQMWR 67
           S+IL K  +  +   +C + Y N       I  + +CA   +G +D CQ DSGGP+ +W+
Sbjct: 307 SHILQKTTLNMLTQVECYKYYGN-------IMVNAMCAY-AKG-KDACQMDSGGPV-LWQ 356

Query: 68  D--VYRLV--GVTSFGRGCGSPVPGVYTRLSRYLDWIES 102
           +    RLV  G+ S+G  CG   P   T++  Y+DWI S
Sbjct: 357 NPRTKRLVNIGIISWGAECGK-YPNGNTKVGSYIDWIVS 394


>AY897570-1|AAW81036.1|  223|Apis mellifera venom protein 2 protein.
          Length = 223

 Score = 21.8 bits (44), Expect = 1.9
 Identities = 11/36 (30%), Positives = 18/36 (50%), Gaps = 3/36 (8%)

Query: 26  ESYLNWRKLPKG---ISDSQICAGDPEGIRDTCQGD 58
           +  +NW K+P+G    S ++I  G    I +T   D
Sbjct: 113 QGVVNWNKIPEGANTTSTTKIIDGHVVAINETTYTD 148


>DQ485319-1|ABF21078.1|  175|Apis mellifera icarapin variant 2
           precursor protein.
          Length = 175

 Score = 21.0 bits (42), Expect = 3.3
 Identities = 11/36 (30%), Positives = 18/36 (50%), Gaps = 3/36 (8%)

Query: 26  ESYLNWRKLPKG---ISDSQICAGDPEGIRDTCQGD 58
           +  +NW K+P+G    S ++I  G    I +T   D
Sbjct: 65  QGVVNWNKIPEGANTTSTTKIIDGHVVTINETTYTD 100


>DQ485318-1|ABF21077.1|  223|Apis mellifera icarapin variant 1
           precursor protein.
          Length = 223

 Score = 21.0 bits (42), Expect = 3.3
 Identities = 11/36 (30%), Positives = 18/36 (50%), Gaps = 3/36 (8%)

Query: 26  ESYLNWRKLPKG---ISDSQICAGDPEGIRDTCQGD 58
           +  +NW K+P+G    S ++I  G    I +T   D
Sbjct: 113 QGVVNWNKIPEGANTTSTTKIIDGHVVTINETTYTD 148


>AY939856-1|AAX33236.1|  223|Apis mellifera venom carbohydrate-rich
           protein precursor protein.
          Length = 223

 Score = 21.0 bits (42), Expect = 3.3
 Identities = 11/36 (30%), Positives = 18/36 (50%), Gaps = 3/36 (8%)

Query: 26  ESYLNWRKLPKG---ISDSQICAGDPEGIRDTCQGD 58
           +  +NW K+P+G    S ++I  G    I +T   D
Sbjct: 113 QGVVNWNKIPEGANTTSTTKIIDGHVVTINETTYTD 148


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.320    0.137    0.458 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 33,444
Number of Sequences: 429
Number of extensions: 1248
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of query: 109
length of database: 140,377
effective HSP length: 50
effective length of query: 59
effective length of database: 118,927
effective search space:  7016693
effective search space used:  7016693
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)
S2: 39 (19.8 bits)