GeneModel BLAST Result against human

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA005378-TA|BGIBMGA005378-PA|undefined
         (245 letters)

Database: human 
           224,733 sequences; 73,234,838 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC012117-1|AAH12117.1|  291|Homo sapiens SDCCAG10 protein protein.     32   1.6  
AY358569-1|AAQ88932.1|  472|Homo sapiens SDCCAG10 protein.             32   1.6  
AF039693-1|AAC18042.1|  332|Homo sapiens unknown protein protein.      32   1.6  
AF039692-1|AAC18041.1|  372|Homo sapiens antigen NY-CO-10 protein.     32   1.6  
AF286471-1|AAG00550.1|  316|Homo sapiens retinitis pigmentosa GT...    31   4.9  

>BC012117-1|AAH12117.1|  291|Homo sapiens SDCCAG10 protein protein.
          Length = 291

 Score = 32.3 bits (70), Expect = 1.6
 Identities = 19/89 (21%), Positives = 44/89 (49%), Gaps = 1/89 (1%)

Query: 100 EDHKEESGQYSLVSDNLETSTENNEDFPKFDEVADVDVIIEESVGEPNDITQIQDDSSLD 159
           E+ +EE  + + VS +++  ++++ D  K D       ++E   G+  D+    +D S +
Sbjct: 109 EEAEEEEEEVNRVSQSMKGKSKSSHDLLKDDPHLSSVPVVESEKGDAPDLVDDGEDESAE 168

Query: 160 YFPEIDDSYRFTSVDKVEDEI-MDTAAGV 187
           +   ID   +    +++  ++  DT+A V
Sbjct: 169 HDEYIDGDEKNLMRERIAKKLKKDTSANV 197


>AY358569-1|AAQ88932.1|  472|Homo sapiens SDCCAG10 protein.
          Length = 472

 Score = 32.3 bits (70), Expect = 1.6
 Identities = 19/89 (21%), Positives = 44/89 (49%), Gaps = 1/89 (1%)

Query: 100 EDHKEESGQYSLVSDNLETSTENNEDFPKFDEVADVDVIIEESVGEPNDITQIQDDSSLD 159
           E+ +EE  + + VS +++  ++++ D  K D       ++E   G+  D+    +D S +
Sbjct: 209 EEAEEEEEEVNRVSQSMKGKSKSSHDLLKDDPHLSSVPVVESEKGDAPDLVDDGEDESAE 268

Query: 160 YFPEIDDSYRFTSVDKVEDEI-MDTAAGV 187
           +   ID   +    +++  ++  DT+A V
Sbjct: 269 HDEYIDGDEKNLMRERIAKKLKKDTSANV 297


>AF039693-1|AAC18042.1|  332|Homo sapiens unknown protein protein.
          Length = 332

 Score = 32.3 bits (70), Expect = 1.6
 Identities = 19/89 (21%), Positives = 44/89 (49%), Gaps = 1/89 (1%)

Query: 100 EDHKEESGQYSLVSDNLETSTENNEDFPKFDEVADVDVIIEESVGEPNDITQIQDDSSLD 159
           E+ +EE  + + VS +++  ++++ D  K D       ++E   G+  D+    +D S +
Sbjct: 69  EEAEEEEEEVNRVSQSMKGKSKSSHDLLKDDPHLSSVPVVESEKGDAADLVDDGEDESAE 128

Query: 160 YFPEIDDSYRFTSVDKVEDEI-MDTAAGV 187
           +   ID   +    +++  ++  DT+A V
Sbjct: 129 HDEYIDGDEKNLMRERIAKKLKKDTSANV 157


>AF039692-1|AAC18041.1|  372|Homo sapiens antigen NY-CO-10 protein.
          Length = 372

 Score = 32.3 bits (70), Expect = 1.6
 Identities = 19/89 (21%), Positives = 44/89 (49%), Gaps = 1/89 (1%)

Query: 100 EDHKEESGQYSLVSDNLETSTENNEDFPKFDEVADVDVIIEESVGEPNDITQIQDDSSLD 159
           E+ +EE  + + VS +++  ++++ D  K D       ++E   G+  D+    +D S +
Sbjct: 109 EEAEEEEEEVNRVSQSMKGKSKSSHDLLKDDPHLSSVPVVESEKGDAPDLVDDGEDESAE 168

Query: 160 YFPEIDDSYRFTSVDKVEDEI-MDTAAGV 187
           +   ID   +    +++  ++  DT+A V
Sbjct: 169 HDEYIDGDEKNLMRERIAKKLKKDTSANV 197


>AF286471-1|AAG00550.1|  316|Homo sapiens retinitis pigmentosa
           GTPase regulator protein.
          Length = 316

 Score = 30.7 bits (66), Expect = 4.9
 Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 7/77 (9%)

Query: 110 SLVSDNLETSTENNEDFPKFDEVADVDVIIE---ESVGEPNDITQIQDDSS---LDYFPE 163
           +L    + T +E N+DF K  E    DVI +   ESV +P+   +   +S     D F +
Sbjct: 150 NLPDRGMNTESEENKDFVKKRESCKQDVIFDSERESVEKPDSYMEGASESQQGIADGFQQ 209

Query: 164 IDDSYRFTSVDKVEDEI 180
             ++  F+S +K +DE+
Sbjct: 210 -PEAIEFSSGEKEDDEV 225


  Database: human
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 73,234,838
  Number of sequences in database:  224,733
  
Lambda     K      H
   0.317    0.134    0.402 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,917,980
Number of Sequences: 224733
Number of extensions: 1069655
Number of successful extensions: 2566
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 2566
Number of HSP's gapped (non-prelim): 5
length of query: 245
length of database: 73,234,838
effective HSP length: 88
effective length of query: 157
effective length of database: 53,458,334
effective search space: 8392958438
effective search space used: 8392958438
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 64 (29.9 bits)