GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA005377-TA|BGIBMGA005377-PA|IPR004595|TFIIH C1-like,
C-terminal, IPR007198|Ssl1-like
         (352 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    29   0.061
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    22   9.2  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    22   9.2  

>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 29.1 bits (62), Expect = 0.061
 Identities = 30/115 (26%), Positives = 40/115 (34%), Gaps = 14/115 (12%)

Query: 214 PGANVDPPITVCM-CHLXXXXXXXXXXHLCPQCRSKYCSLPAQCRTCGLTLASAPHLARS 272
           P  N++     C+ C            HL  +   K    P +C  CG T A    L R 
Sbjct: 53  PLTNIEEKTYQCLLCQKAFDQKNLYQSHL--RSHGKEGEDPYRCNICGKTFAVPARLTRH 110

Query: 273 YHHLFPVEPYEELDNDGQAQYCFGCLRTFTDIDKKIHRCPRCKE--YYCWECEGA 325
           Y      +PY       Q +YC        ++   +HR    KE  Y C  CE A
Sbjct: 111 YRTHTGEKPY-------QCEYCSKSFSVKENL--SVHRRIHTKERPYKCDVCERA 156


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 21.8 bits (44), Expect = 9.2
 Identities = 9/28 (32%), Positives = 13/28 (46%)

Query: 155 ICKKMCQDTNGDYGVVLDDCHYQSLLLE 182
           I +KM  D  GDY  +    H+  L  +
Sbjct: 442 IYQKMVADVVGDYFFICPSIHFAQLFAD 469


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 21.8 bits (44), Expect = 9.2
 Identities = 9/28 (32%), Positives = 13/28 (46%)

Query: 155 ICKKMCQDTNGDYGVVLDDCHYQSLLLE 182
           I +KM  D  GDY  +    H+  L  +
Sbjct: 442 IYQKMVADVVGDYFFICPSIHFAQLFAD 469


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.321    0.137    0.440 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 101,291
Number of Sequences: 429
Number of extensions: 3917
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 3
Number of HSP's gapped (non-prelim): 3
length of query: 352
length of database: 140,377
effective HSP length: 58
effective length of query: 294
effective length of database: 115,495
effective search space: 33955530
effective search space used: 33955530
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 44 (21.8 bits)