GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA005376-TA|BGIBMGA005376-PA|IPR001873|Na+ channel,
amiloride-sensitive
         (509 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22E12.01 ||SPAC890.09|triose phosphate transporter |Schizosa...    33   0.071
SPBC2G2.17c |||beta-glucosidase Psu2 |Schizosaccharomyces pombe|...    27   6.2  
SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase Mde10|S...    27   6.2  

>SPAC22E12.01 ||SPAC890.09|triose phosphate transporter
          |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 374

 Score = 33.5 bits (73), Expect = 0.071
 Identities = 11/28 (39%), Positives = 19/28 (67%)

Query: 35 DTKRHWVERIFWLVFVALSWYASSLLIA 62
          D  +HW+ R+  +V + L+WY  SLL++
Sbjct: 41 DRPQHWITRVVIIVLIVLAWYFFSLLLS 68


>SPBC2G2.17c |||beta-glucosidase Psu2 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 319

 Score = 27.1 bits (57), Expect = 6.2
 Identities = 15/55 (27%), Positives = 24/55 (43%), Gaps = 2/55 (3%)

Query: 61  IAAQYDAYLNNPISFVVETTYKDWNTYFPAVAVCENDNSKRAEEISDSLWGQEHD 115
           I    D     P+S V E +Y +W     +     N + + AE++   +WG E D
Sbjct: 186 IPTNIDGGSKQPLSDVDEDSYYNWGGKKTSAQYYVNKSGRSAEDV--CVWGNEGD 238


>SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase
           Mde10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 512

 Score = 27.1 bits (57), Expect = 6.2
 Identities = 15/61 (24%), Positives = 26/61 (42%), Gaps = 7/61 (11%)

Query: 305 ACTVQCRKDAQMRFCNCSNYFMPNVPEHLKCNVSGIICLNNYVNILTVLKAPWSSRPGLY 364
           +C V C+ +    F +  +Y      +  +C   G +C N     +    A WS +P L+
Sbjct: 442 SCKVSCQNEDGTCFISAKDYI-----DGTRCR--GGLCYNGVCVPIEGSSASWSKQPSLF 494

Query: 365 C 365
           C
Sbjct: 495 C 495


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.321    0.136    0.436 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,598,638
Number of Sequences: 5004
Number of extensions: 117386
Number of successful extensions: 282
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 281
Number of HSP's gapped (non-prelim): 3
length of query: 509
length of database: 2,362,478
effective HSP length: 76
effective length of query: 433
effective length of database: 1,982,174
effective search space: 858281342
effective search space used: 858281342
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 56 (26.6 bits)