GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA005376-TA|BGIBMGA005376-PA|IPR001873|Na+ channel,
amiloride-sensitive
         (509 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    23   6.0  
AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier...    23   7.9  
AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor p...    23   7.9  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    23   7.9  

>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 23.0 bits (47), Expect = 6.0
 Identities = 15/47 (31%), Positives = 21/47 (44%)

Query: 383 KDATAEDYATVEIELAMLPSERYRRNVVRGILDLVVSTGGTGGLFLG 429
           KD  A+    +E   A+LP  R     +R  L  V   GG G + +G
Sbjct: 219 KDGNADGKTLIEALDAILPPSRPTDKALRLPLQDVYKIGGIGTVPVG 265


>AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier
           protein JHBP-1 protein.
          Length = 253

 Score = 22.6 bits (46), Expect = 7.9
 Identities = 25/90 (27%), Positives = 38/90 (42%), Gaps = 5/90 (5%)

Query: 400 LPSERYRRNVVRGILDLVVSTGGTGGLFLGASILSFVEL-LYILLIRPFCDIYSQREDDP 458
           LP + Y + +   + D VVS    GGL     IL    L +  + I       + R++  
Sbjct: 35  LPQKEYNQCIAEAVRDAVVSL--AGGL-KSFKILPIEPLAVDSVKIGESQGSVTLRQEYK 91

Query: 459 WYRKYG-TRRLEDNKYTPNWKWNYFRSKSY 487
             + YG T+ LE   Y  +W      S+SY
Sbjct: 92  NIKLYGLTKNLEIKNYNIDWDKCILSSESY 121


>AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor
           protein.
          Length = 139

 Score = 22.6 bits (46), Expect = 7.9
 Identities = 9/26 (34%), Positives = 15/26 (57%)

Query: 423 TGGLFLGASILSFVELLYILLIRPFC 448
           T G+ +G  IL ++    + L+R FC
Sbjct: 10  TLGIIVGGFILCWLPFFTMYLVRAFC 35


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 22.6 bits (46), Expect = 7.9
 Identities = 9/26 (34%), Positives = 15/26 (57%)

Query: 423 TGGLFLGASILSFVELLYILLIRPFC 448
           T G+ +G  IL ++    + L+R FC
Sbjct: 458 TLGIIVGGFILCWLPFFTMYLVRAFC 483


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.321    0.136    0.436 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 170,296
Number of Sequences: 429
Number of extensions: 8844
Number of successful extensions: 13
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 10
Number of HSP's gapped (non-prelim): 4
length of query: 509
length of database: 140,377
effective HSP length: 61
effective length of query: 448
effective length of database: 114,208
effective search space: 51165184
effective search space used: 51165184
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 46 (22.6 bits)