GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA005375-TA|BGIBMGA005375-PA|IPR001873|Na+ channel,
amiloride-sensitive
         (330 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    23   4.9  
AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.                22   6.4  

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 21/74 (28%), Positives = 33/74 (44%), Gaps = 6/74 (8%)

Query: 64  MPEGISVSNIIF-PAVGICSNNRISKRAVTELSKHLLKAERNKKYDEEEMMRLLFGLGEL 122
           +PE  S+S+    P +  CS+    KR  ++ +   +KAE        E  + +   GEL
Sbjct: 863 IPEQTSISHENNQPTMNKCSDR---KRPASQATS--VKAEPGSIMAMSESSKKVLSPGEL 917

Query: 123 YDYQTSNDGNMSHM 136
                SNDG  S +
Sbjct: 918 LSSCVSNDGGCSSL 931


>AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.
          Length = 316

 Score = 22.2 bits (45), Expect = 6.4
 Identities = 10/31 (32%), Positives = 16/31 (51%)

Query: 246 MENARTCDLRDIPCLQIYYAQSIAVRPDVEP 276
           ++N R C L+ I C   +   +  V  DV+P
Sbjct: 153 IKNERICILKSITCALQFCHNAGIVHADVKP 183


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.323    0.138    0.425 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 98,556
Number of Sequences: 429
Number of extensions: 4451
Number of successful extensions: 7
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 6
Number of HSP's gapped (non-prelim): 2
length of query: 330
length of database: 140,377
effective HSP length: 58
effective length of query: 272
effective length of database: 115,495
effective search space: 31414640
effective search space used: 31414640
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 44 (21.8 bits)