Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA005374-TA|BGIBMGA005374-PA|IPR008984|SMAD/FHA,
IPR006551|DNA 3-phosphatase, IPR006549|HAD-superfamily hydrolase,
subfamily IIIA, IPR013954|Polynucleotide kinase 3 phosphatase, central
region
(447 letters)
Database: human
224,733 sequences; 73,234,838 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC033822-1|AAH33822.1| 521|Homo sapiens polynucleotide kinase 3... 332 2e-90
BC002519-1|AAH02519.2| 482|Homo sapiens PNKP protein protein. 332 2e-90
AY133033-1|AAM82170.1| 521|Homo sapiens polynucleotide kinase 3... 332 2e-90
AF354258-1|AAK57340.1| 521|Homo sapiens polynucleotide kinase-3... 332 2e-90
AF126486-1|AAD51135.1| 521|Homo sapiens polynucleotide kinase-3... 332 2e-90
AF125807-1|AAD50639.1| 521|Homo sapiens DNA 5'-kinase/3'-phosph... 332 2e-90
AC018766-1|AAF44716.1| 456|Homo sapiens Polynucleotide kinase 3... 326 7e-89
AF120499-1|AAD47379.1| 398|Homo sapiens DEM1 protein protein. 247 5e-65
BX538161-1|CAD98041.1| 292|Homo sapiens hypothetical protein pr... 50 2e-05
BC104881-1|AAI04882.1| 342|Homo sapiens aprataxin, isoform a pr... 50 2e-05
AY302071-1|AAQ74134.1| 192|Homo sapiens aprataxin variant LE5 p... 50 2e-05
AY302067-1|AAQ74130.1| 342|Homo sapiens aprataxin protein. 50 2e-05
AY208837-1|AAP86327.1| 342|Homo sapiens FHA-HIT aberrant isofor... 50 2e-05
AY208836-1|AAP86326.1| 342|Homo sapiens FHA-HIT aberrant isofor... 50 2e-05
AY208834-1|AAP86324.1| 337|Homo sapiens FHA-HIT isoform protein. 50 2e-05
AY208829-1|AAP86319.1| 356|Homo sapiens FHA-HIT short isoform p... 50 2e-05
AY040777-1|AAK91768.1| 356|Homo sapiens forkhead-associated dom... 50 2e-05
AL353717-8|CAI15735.1| 342|Homo sapiens aprataxin protein. 50 2e-05
AL353717-3|CAI15730.1| 306|Homo sapiens aprataxin protein. 50 2e-05
AL353717-2|CAI15728.1| 356|Homo sapiens aprataxin protein. 50 2e-05
AL162590-3|CAI15551.1| 306|Homo sapiens aprataxin protein. 50 2e-05
AL162590-2|CAI15549.1| 356|Homo sapiens aprataxin protein. 50 2e-05
AJ565854-1|CAD92458.1| 247|Homo sapiens aprataxin protein. 50 2e-05
AY208831-1|AAP86321.1| 284|Homo sapiens FHA-HIT isoform protein. 41 0.008
AL353717-1|CAI15729.1| 280|Homo sapiens aprataxin protein. 41 0.008
AL162590-1|CAI15550.1| 280|Homo sapiens aprataxin protein. 41 0.008
BC047932-1|AAH47932.1| 437|Homo sapiens vacuolar protein sortin... 38 0.095
AF282903-1|AAG01470.1| 437|Homo sapiens vacuolar protein sortin... 38 0.095
AF255952-1|AAK52408.1| 437|Homo sapiens vacuolar protein sortin... 38 0.095
AF159063-1|AAD49227.1| 437|Homo sapiens SKD1-homolog protein. 38 0.095
AF155740-1|AAD42971.1| 432|Homo sapiens vacuolar sorting protei... 38 0.095
AF112215-1|AAF17203.1| 437|Homo sapiens SKD1 protein protein. 38 0.095
BC039574-1|AAH39574.1| 444|Homo sapiens vacuolar protein sortin... 36 0.22
AY232629-1|AAP59551.1| 444|Homo sapiens cell migration-inducing... 36 0.22
AF282904-1|AAG01471.1| 444|Homo sapiens vacuolar protein sortin... 36 0.22
AF195514-1|AAG33022.1| 444|Homo sapiens VPS4-2 ATPase protein. 36 0.22
BC096077-1|AAH96077.1| 271|Homo sapiens PFKFB1 protein protein. 35 0.51
AF132747-1|AAL75948.1| 437|Homo sapiens SKD2 protein protein. 34 0.88
AC007956-2|AAF61275.1| 1822|Homo sapiens unknown protein. 33 2.0
AL583807-2|CAH69983.1| 1587|Homo sapiens laminin, gamma 3 protein. 32 4.7
AL355872-3|CAI39529.1| 1587|Homo sapiens laminin, gamma 3 protein. 32 4.7
BX276089-2|CAI16432.1| 311|Homo sapiens katanin p60 (ATPase-con... 31 8.2
BC050428-1|AAH50428.1| 311|Homo sapiens KATNA1 protein protein. 31 8.2
BC007426-1|AAH07426.1| 172|Homo sapiens TAF9 RNA polymerase II,... 31 8.2
BC007349-1|AAH07349.1| 172|Homo sapiens TAF9 RNA polymerase II,... 31 8.2
AL078581-2|CAI19504.1| 311|Homo sapiens katanin p60 (ATPase-con... 31 8.2
AJ878881-1|CAI48031.1| 172|Homo sapiens coilin-interacting nulc... 31 8.2
AJ878880-1|CAI48030.1| 172|Homo sapiens coilin-interacting nucl... 31 8.2
AJ246003-1|CAB60208.1| 616|Homo sapiens spastin protein protein. 31 8.2
AJ246001-1|CAB60141.1| 616|Homo sapiens spastin protein protein. 31 8.2
AF151895-1|AAD34132.1| 172|Homo sapiens CGI-137 protein protein. 31 8.2
AF110777-1|AAF14860.1| 172|Homo sapiens adrenal gland protein A... 31 8.2
AB029006-1|BAA83035.1| 584|Homo sapiens KIAA1083 protein protein. 31 8.2
>BC033822-1|AAH33822.1| 521|Homo sapiens polynucleotide kinase
3'-phosphatase protein.
Length = 521
Score = 332 bits (815), Expect = 2e-90
Identities = 185/451 (41%), Positives = 254/451 (56%), Gaps = 25/451 (5%)
Query: 4 VSLKADCEKCHVEIKQLGVNASGLDGFALKKDEVYEIGHGSTIEILLNNHVHILEFDPPP 63
V L AD E V +KQLGVN S LK +G G T+ ++ N +H
Sbjct: 51 VELVADPETRTVAVKQLGVNPSTTGTQELKPGLEGSLGVGDTLYLV--NGLH-------- 100
Query: 64 ESLTTSQNQTFKRKLEDDSTSQRXXXXXXXXXXXXXXXXXXXXIRDMWDEIDKGELYVFT 123
LT +T + + D+ W+ ++K L VFT
Sbjct: 101 -PLTLRWEETRTPESQPDTPPGTPLVSQDEKRDAELPKKRMRKSNPGWENLEK--LLVFT 157
Query: 124 AKGVKSSDKIASFDMDGTLIKTKSGKVHPVDINDWQIAFPSVPQKLKEFLEKDYKIVLFS 183
A GVK K+A FD+DGTLI T+SGKV P +DW+I +P +P+KL+E + YK+V+F+
Sbjct: 158 AAGVKPQGKVAGFDLDGTLITTRSGKVFPTGPSDWRILYPEIPRKLRELEAEGYKLVIFT 217
Query: 184 NQAPIGNGRVKIEDFKKKIESIVQKLNVPVQAYIATGKGIYRKPRIGMWMTLTEKKNDGV 243
NQ IG G++ E+FK K+E++V+KL VP Q +AT G+YRKP GMW L E+ NDG
Sbjct: 218 NQMSIGRGKLPAEEFKAKVEAVVEKLGVPFQVLVATHAGLYRKPVTGMWDHLQEQANDGT 277
Query: 244 KVDMNQSFYCGDAAGRVANWAPG-KKKDHSLADKLFAENLELKFYTPEQFFLGHSIANVL 302
+ + S + GDAAGR ANWAPG KKKD S AD+LFA NL L F TPE+FFL A
Sbjct: 278 PISIGDSIFVGDAAGRPANWAPGRKKKDFSCADRLFALNLGLPFATPEEFFLKWPAAG-- 335
Query: 303 MSKPEFHPKEVTVE-----PFNNKLISKDKEILILVGFPGSGKS-YLAKQIETKSNHKYA 356
P F P+ V+ P + L+S E+++ VGFPG+GKS +L K + + Y
Sbjct: 336 FELPAFDPRTVSRSGPLCLPESRALLSASPEVVVAVGFPGAGKSTFLKKHLVSAG---YV 392
Query: 357 TVCRDILGSWQKCAAEATKLLQQGKSVIVDSTNPDVESRSRWTSLAKQNKVDCRCAKMAT 416
V RD LGSWQ+C L+QGK V +D+TNPD SR+R+ A+ V CRC
Sbjct: 393 HVNRDTLGSWQRCVTTCETALKQGKRVAIDNTNPDAASRARYVQCARAAGVPCRCFLFTA 452
Query: 417 SKAHAQHNNKFRELMKINHVPVNDIVFHTYK 447
+ A+HNN+FRE+ +H+PV+D+V + Y+
Sbjct: 453 TLEQARHNNRFREMTDSSHIPVSDMVMYGYR 483
>BC002519-1|AAH02519.2| 482|Homo sapiens PNKP protein protein.
Length = 482
Score = 332 bits (815), Expect = 2e-90
Identities = 185/451 (41%), Positives = 254/451 (56%), Gaps = 25/451 (5%)
Query: 4 VSLKADCEKCHVEIKQLGVNASGLDGFALKKDEVYEIGHGSTIEILLNNHVHILEFDPPP 63
V L AD E V +KQLGVN S LK +G G T+ ++ N +H
Sbjct: 12 VELVADPETRTVAVKQLGVNPSTTGTQELKPGLEGSLGVGDTLYLV--NGLH-------- 61
Query: 64 ESLTTSQNQTFKRKLEDDSTSQRXXXXXXXXXXXXXXXXXXXXIRDMWDEIDKGELYVFT 123
LT +T + + D+ W+ ++K L VFT
Sbjct: 62 -PLTLRWEETRTPESQPDTPPGTPLVSQDEKRDAELPKKRMRKSNPGWENLEK--LLVFT 118
Query: 124 AKGVKSSDKIASFDMDGTLIKTKSGKVHPVDINDWQIAFPSVPQKLKEFLEKDYKIVLFS 183
A GVK K+A FD+DGTLI T+SGKV P +DW+I +P +P+KL+E + YK+V+F+
Sbjct: 119 AAGVKPQGKVAGFDLDGTLITTRSGKVFPTGPSDWRILYPEIPRKLRELEAEGYKLVIFT 178
Query: 184 NQAPIGNGRVKIEDFKKKIESIVQKLNVPVQAYIATGKGIYRKPRIGMWMTLTEKKNDGV 243
NQ IG G++ E+FK K+E++V+KL VP Q +AT G+YRKP GMW L E+ NDG
Sbjct: 179 NQMSIGRGKLPAEEFKAKVEAVVEKLGVPFQVLVATHAGLYRKPVTGMWDHLQEQANDGT 238
Query: 244 KVDMNQSFYCGDAAGRVANWAPG-KKKDHSLADKLFAENLELKFYTPEQFFLGHSIANVL 302
+ + S + GDAAGR ANWAPG KKKD S AD+LFA NL L F TPE+FFL A
Sbjct: 239 PISIGDSIFVGDAAGRPANWAPGRKKKDFSCADRLFALNLGLPFATPEEFFLKWPAAG-- 296
Query: 303 MSKPEFHPKEVTVE-----PFNNKLISKDKEILILVGFPGSGKS-YLAKQIETKSNHKYA 356
P F P+ V+ P + L+S E+++ VGFPG+GKS +L K + + Y
Sbjct: 297 FELPAFDPRTVSRSGPLCLPESRALLSASPEVVVAVGFPGAGKSTFLKKHLVSAG---YV 353
Query: 357 TVCRDILGSWQKCAAEATKLLQQGKSVIVDSTNPDVESRSRWTSLAKQNKVDCRCAKMAT 416
V RD LGSWQ+C L+QGK V +D+TNPD SR+R+ A+ V CRC
Sbjct: 354 HVNRDTLGSWQRCVTTCETALKQGKRVAIDNTNPDAASRARYVQCARAAGVPCRCFLFTA 413
Query: 417 SKAHAQHNNKFRELMKINHVPVNDIVFHTYK 447
+ A+HNN+FRE+ +H+PV+D+V + Y+
Sbjct: 414 TLEQARHNNRFREMTDSSHIPVSDMVMYGYR 444
>AY133033-1|AAM82170.1| 521|Homo sapiens polynucleotide kinase
3'-phosphatase protein.
Length = 521
Score = 332 bits (815), Expect = 2e-90
Identities = 185/451 (41%), Positives = 254/451 (56%), Gaps = 25/451 (5%)
Query: 4 VSLKADCEKCHVEIKQLGVNASGLDGFALKKDEVYEIGHGSTIEILLNNHVHILEFDPPP 63
V L AD E V +KQLGVN S LK +G G T+ ++ N +H
Sbjct: 51 VELVADPETRTVAVKQLGVNPSTTGTQELKPGLEGSLGVGDTLYLV--NGLH-------- 100
Query: 64 ESLTTSQNQTFKRKLEDDSTSQRXXXXXXXXXXXXXXXXXXXXIRDMWDEIDKGELYVFT 123
LT +T + + D+ W+ ++K L VFT
Sbjct: 101 -PLTLRWEETRTPESQPDTPPGTPLVSQDEKRDAELPKKRMRKSNPGWENLEK--LLVFT 157
Query: 124 AKGVKSSDKIASFDMDGTLIKTKSGKVHPVDINDWQIAFPSVPQKLKEFLEKDYKIVLFS 183
A GVK K+A FD+DGTLI T+SGKV P +DW+I +P +P+KL+E + YK+V+F+
Sbjct: 158 AAGVKPQGKVAGFDLDGTLITTRSGKVFPTGPSDWRILYPEIPRKLRELEAEGYKLVIFT 217
Query: 184 NQAPIGNGRVKIEDFKKKIESIVQKLNVPVQAYIATGKGIYRKPRIGMWMTLTEKKNDGV 243
NQ IG G++ E+FK K+E++V+KL VP Q +AT G+YRKP GMW L E+ NDG
Sbjct: 218 NQMSIGRGKLPAEEFKAKVEAVVEKLGVPFQVLVATHAGLYRKPVTGMWDHLQEQANDGT 277
Query: 244 KVDMNQSFYCGDAAGRVANWAPG-KKKDHSLADKLFAENLELKFYTPEQFFLGHSIANVL 302
+ + S + GDAAGR ANWAPG KKKD S AD+LFA NL L F TPE+FFL A
Sbjct: 278 PISIGDSIFVGDAAGRPANWAPGRKKKDFSCADRLFALNLGLPFATPEEFFLKWPAAG-- 335
Query: 303 MSKPEFHPKEVTVE-----PFNNKLISKDKEILILVGFPGSGKS-YLAKQIETKSNHKYA 356
P F P+ V+ P + L+S E+++ VGFPG+GKS +L K + + Y
Sbjct: 336 FELPAFDPRTVSRSGPLCLPESRALLSASPEVVVAVGFPGAGKSTFLKKHLVSAG---YV 392
Query: 357 TVCRDILGSWQKCAAEATKLLQQGKSVIVDSTNPDVESRSRWTSLAKQNKVDCRCAKMAT 416
V RD LGSWQ+C L+QGK V +D+TNPD SR+R+ A+ V CRC
Sbjct: 393 HVNRDTLGSWQRCVTTCETALKQGKRVAIDNTNPDAASRARYVQCARAAGVPCRCFLFTA 452
Query: 417 SKAHAQHNNKFRELMKINHVPVNDIVFHTYK 447
+ A+HNN+FRE+ +H+PV+D+V + Y+
Sbjct: 453 TLEQARHNNRFREMTDSSHIPVSDMVMYGYR 483
>AF354258-1|AAK57340.1| 521|Homo sapiens polynucleotide
kinase-3'-phosphatase protein.
Length = 521
Score = 332 bits (815), Expect = 2e-90
Identities = 185/451 (41%), Positives = 254/451 (56%), Gaps = 25/451 (5%)
Query: 4 VSLKADCEKCHVEIKQLGVNASGLDGFALKKDEVYEIGHGSTIEILLNNHVHILEFDPPP 63
V L AD E V +KQLGVN S LK +G G T+ ++ N +H
Sbjct: 51 VELVADPETRTVAVKQLGVNPSTTGTQELKPGLEGSLGVGDTLYLV--NGLH-------- 100
Query: 64 ESLTTSQNQTFKRKLEDDSTSQRXXXXXXXXXXXXXXXXXXXXIRDMWDEIDKGELYVFT 123
LT +T + + D+ W+ ++K L VFT
Sbjct: 101 -PLTLRWEETRTPESQPDTPPGTPLVSQDEKRDAELPKKRMRKSNPGWENLEK--LLVFT 157
Query: 124 AKGVKSSDKIASFDMDGTLIKTKSGKVHPVDINDWQIAFPSVPQKLKEFLEKDYKIVLFS 183
A GVK K+A FD+DGTLI T+SGKV P +DW+I +P +P+KL+E + YK+V+F+
Sbjct: 158 AAGVKPQGKVAGFDLDGTLITTRSGKVFPTGPSDWRILYPEIPRKLRELEAEGYKLVIFT 217
Query: 184 NQAPIGNGRVKIEDFKKKIESIVQKLNVPVQAYIATGKGIYRKPRIGMWMTLTEKKNDGV 243
NQ IG G++ E+FK K+E++V+KL VP Q +AT G+YRKP GMW L E+ NDG
Sbjct: 218 NQMSIGRGKLPAEEFKAKVEAVVEKLGVPFQVLVATHAGLYRKPVTGMWDHLQEQANDGT 277
Query: 244 KVDMNQSFYCGDAAGRVANWAPG-KKKDHSLADKLFAENLELKFYTPEQFFLGHSIANVL 302
+ + S + GDAAGR ANWAPG KKKD S AD+LFA NL L F TPE+FFL A
Sbjct: 278 PISIGDSIFVGDAAGRPANWAPGRKKKDFSCADRLFALNLGLPFATPEEFFLKWPAAG-- 335
Query: 303 MSKPEFHPKEVTVE-----PFNNKLISKDKEILILVGFPGSGKS-YLAKQIETKSNHKYA 356
P F P+ V+ P + L+S E+++ VGFPG+GKS +L K + + Y
Sbjct: 336 FELPAFDPRTVSRSGPLCLPESRALLSASPEVVVAVGFPGAGKSTFLKKHLVSAG---YV 392
Query: 357 TVCRDILGSWQKCAAEATKLLQQGKSVIVDSTNPDVESRSRWTSLAKQNKVDCRCAKMAT 416
V RD LGSWQ+C L+QGK V +D+TNPD SR+R+ A+ V CRC
Sbjct: 393 HVNRDTLGSWQRCVTTCETALKQGKRVAIDNTNPDAASRARYVQCARAAGVPCRCFLFTA 452
Query: 417 SKAHAQHNNKFRELMKINHVPVNDIVFHTYK 447
+ A+HNN+FRE+ +H+PV+D+V + Y+
Sbjct: 453 TLEQARHNNRFREMTDSSHIPVSDMVMYGYR 483
>AF126486-1|AAD51135.1| 521|Homo sapiens polynucleotide
kinase-3'-phosphatase protein.
Length = 521
Score = 332 bits (815), Expect = 2e-90
Identities = 185/451 (41%), Positives = 254/451 (56%), Gaps = 25/451 (5%)
Query: 4 VSLKADCEKCHVEIKQLGVNASGLDGFALKKDEVYEIGHGSTIEILLNNHVHILEFDPPP 63
V L AD E V +KQLGVN S LK +G G T+ ++ N +H
Sbjct: 51 VELVADPETRTVAVKQLGVNPSTTGTQELKPGLEGSLGVGDTLYLV--NGLH-------- 100
Query: 64 ESLTTSQNQTFKRKLEDDSTSQRXXXXXXXXXXXXXXXXXXXXIRDMWDEIDKGELYVFT 123
LT +T + + D+ W+ ++K L VFT
Sbjct: 101 -PLTLRWEETRTPESQPDTPPGTPLVSQDEKRDAELPKKRMRKSNPGWENLEK--LLVFT 157
Query: 124 AKGVKSSDKIASFDMDGTLIKTKSGKVHPVDINDWQIAFPSVPQKLKEFLEKDYKIVLFS 183
A GVK K+A FD+DGTLI T+SGKV P +DW+I +P +P+KL+E + YK+V+F+
Sbjct: 158 AAGVKPQGKVAGFDLDGTLITTRSGKVFPTGPSDWRILYPEIPRKLRELEAEGYKLVIFT 217
Query: 184 NQAPIGNGRVKIEDFKKKIESIVQKLNVPVQAYIATGKGIYRKPRIGMWMTLTEKKNDGV 243
NQ IG G++ E+FK K+E++V+KL VP Q +AT G+YRKP GMW L E+ NDG
Sbjct: 218 NQMSIGRGKLPAEEFKAKVEAVVEKLGVPFQVLVATHAGLYRKPVTGMWDHLQEQANDGT 277
Query: 244 KVDMNQSFYCGDAAGRVANWAPG-KKKDHSLADKLFAENLELKFYTPEQFFLGHSIANVL 302
+ + S + GDAAGR ANWAPG KKKD S AD+LFA NL L F TPE+FFL A
Sbjct: 278 PISIGDSIFVGDAAGRPANWAPGRKKKDFSCADRLFALNLGLPFATPEEFFLKWPAAG-- 335
Query: 303 MSKPEFHPKEVTVE-----PFNNKLISKDKEILILVGFPGSGKS-YLAKQIETKSNHKYA 356
P F P+ V+ P + L+S E+++ VGFPG+GKS +L K + + Y
Sbjct: 336 FELPAFDPRTVSRSGPLCLPESRALLSASPEVVVAVGFPGAGKSTFLKKHLVSAG---YV 392
Query: 357 TVCRDILGSWQKCAAEATKLLQQGKSVIVDSTNPDVESRSRWTSLAKQNKVDCRCAKMAT 416
V RD LGSWQ+C L+QGK V +D+TNPD SR+R+ A+ V CRC
Sbjct: 393 HVNRDTLGSWQRCVTTCETALKQGKRVAIDNTNPDAASRARYVQCARAAGVPCRCFLFTA 452
Query: 417 SKAHAQHNNKFRELMKINHVPVNDIVFHTYK 447
+ A+HNN+FRE+ +H+PV+D+V + Y+
Sbjct: 453 TLEQARHNNRFREMTDSSHIPVSDMVMYGYR 483
>AF125807-1|AAD50639.1| 521|Homo sapiens DNA
5'-kinase/3'-phosphatase protein.
Length = 521
Score = 332 bits (815), Expect = 2e-90
Identities = 185/451 (41%), Positives = 254/451 (56%), Gaps = 25/451 (5%)
Query: 4 VSLKADCEKCHVEIKQLGVNASGLDGFALKKDEVYEIGHGSTIEILLNNHVHILEFDPPP 63
V L AD E V +KQLGVN S LK +G G T+ ++ N +H
Sbjct: 51 VELVADPETRTVAVKQLGVNPSTTGTQELKPGLEGSLGVGDTLYLV--NGLH-------- 100
Query: 64 ESLTTSQNQTFKRKLEDDSTSQRXXXXXXXXXXXXXXXXXXXXIRDMWDEIDKGELYVFT 123
LT +T + + D+ W+ ++K L VFT
Sbjct: 101 -PLTLRWEETRTPESQPDTPPGTPLVSQDEKRDAELPKKRMRKSNPGWENLEK--LLVFT 157
Query: 124 AKGVKSSDKIASFDMDGTLIKTKSGKVHPVDINDWQIAFPSVPQKLKEFLEKDYKIVLFS 183
A GVK K+A FD+DGTLI T+SGKV P +DW+I +P +P+KL+E + YK+V+F+
Sbjct: 158 AAGVKPQGKVAGFDLDGTLITTRSGKVFPTGPSDWRILYPEIPRKLRELEAEGYKLVIFT 217
Query: 184 NQAPIGNGRVKIEDFKKKIESIVQKLNVPVQAYIATGKGIYRKPRIGMWMTLTEKKNDGV 243
NQ IG G++ E+FK K+E++V+KL VP Q +AT G+YRKP GMW L E+ NDG
Sbjct: 218 NQMSIGRGKLPAEEFKAKVEAVVEKLGVPFQVLVATHAGLYRKPVTGMWDHLQEQANDGT 277
Query: 244 KVDMNQSFYCGDAAGRVANWAPG-KKKDHSLADKLFAENLELKFYTPEQFFLGHSIANVL 302
+ + S + GDAAGR ANWAPG KKKD S AD+LFA NL L F TPE+FFL A
Sbjct: 278 PISIGDSIFVGDAAGRPANWAPGRKKKDFSCADRLFALNLGLPFATPEEFFLKWPAAG-- 335
Query: 303 MSKPEFHPKEVTVE-----PFNNKLISKDKEILILVGFPGSGKS-YLAKQIETKSNHKYA 356
P F P+ V+ P + L+S E+++ VGFPG+GKS +L K + + Y
Sbjct: 336 FELPAFDPRTVSRSGPLCLPESRALLSASPEVVVAVGFPGAGKSTFLKKHLVSAG---YV 392
Query: 357 TVCRDILGSWQKCAAEATKLLQQGKSVIVDSTNPDVESRSRWTSLAKQNKVDCRCAKMAT 416
V RD LGSWQ+C L+QGK V +D+TNPD SR+R+ A+ V CRC
Sbjct: 393 HVNRDTLGSWQRCVTTCETALKQGKRVAIDNTNPDAASRARYVQCARAAGVPCRCFLFTA 452
Query: 417 SKAHAQHNNKFRELMKINHVPVNDIVFHTYK 447
+ A+HNN+FRE+ +H+PV+D+V + Y+
Sbjct: 453 TLEQARHNNRFREMTDSSHIPVSDMVMYGYR 483
>AC018766-1|AAF44716.1| 456|Homo sapiens Polynucleotide kinase
3'-phosphatase, partial sequence protein.
Length = 456
Score = 326 bits (802), Expect = 7e-89
Identities = 161/344 (46%), Positives = 220/344 (63%), Gaps = 14/344 (4%)
Query: 111 WDEIDKGELYVFTAKGVKSSDKIASFDMDGTLIKTKSGKVHPVDINDWQIAFPSVPQKLK 170
W+ ++K L VFTA GVK K+A FD+DGTLI T+SGKV P +DW+I +P +P+KL+
Sbjct: 82 WENLEK--LLVFTAAGVKPQGKVAGFDLDGTLITTRSGKVFPTGPSDWRILYPEIPRKLR 139
Query: 171 EFLEKDYKIVLFSNQAPIGNGRVKIEDFKKKIESIVQKLNVPVQAYIATGKGIYRKPRIG 230
E + YK+V+F+NQ IG G++ E+FK K+E++V+KL VP Q +AT G+YRKP G
Sbjct: 140 ELEAEGYKLVIFTNQMSIGRGKLPAEEFKAKVEAVVEKLGVPFQVLVATHAGLYRKPVTG 199
Query: 231 MWMTLTEKKNDGVKVDMNQSFYCGDAAGRVANWAPG-KKKDHSLADKLFAENLELKFYTP 289
MW L E+ NDG + + S + GDAAGR ANWAPG KKKD S AD+LFA NL L F TP
Sbjct: 200 MWDHLQEQANDGTPISIGDSIFVGDAAGRPANWAPGRKKKDFSCADRLFALNLGLPFATP 259
Query: 290 EQFFLGHSIANVLMSKPEFHPKEVTVE-----PFNNKLISKDKEILILVGFPGSGKS-YL 343
E+FFL A P F P+ V+ P + L+S E+++ VGFPG+GKS +L
Sbjct: 260 EEFFLKWPAAG--FELPAFDPRTVSRSGPLCLPESRALLSASPEVVVAVGFPGAGKSTFL 317
Query: 344 AKQIETKSNHKYATVCRDILGSWQKCAAEATKLLQQGKSVIVDSTNPDVESRSRWTSLAK 403
K + + Y V RD LGSWQ+C L+QGK V +D+TNPD SR+R+ A+
Sbjct: 318 KKHLVSAG---YVHVNRDTLGSWQRCVTTCETALKQGKRVAIDNTNPDAASRARYVQCAR 374
Query: 404 QNKVDCRCAKMATSKAHAQHNNKFRELMKINHVPVNDIVFHTYK 447
V CRC + A+HNN+FRE+ +H+PV+D+V + Y+
Sbjct: 375 AAGVPCRCFLFTATLEQARHNNRFREMTDSSHIPVSDMVMYGYR 418
>AF120499-1|AAD47379.1| 398|Homo sapiens DEM1 protein protein.
Length = 398
Score = 247 bits (605), Expect = 5e-65
Identities = 145/363 (39%), Positives = 198/363 (54%), Gaps = 21/363 (5%)
Query: 4 VSLKADCEKCHVEIKQLGVNASGLDGFALKKDEVYEIGHGSTIEILLNNHVHILEFDPPP 63
V L AD E V +KQLGVN S LK +G G T+ ++ N +H
Sbjct: 51 VELVADPETRTVAVKQLGVNPSTTGTQELKPGLEGSLGVGDTLYLV--NGLH-------- 100
Query: 64 ESLTTSQNQTFKRKLEDDSTSQRXXXXXXXXXXXXXXXXXXXXIRDMWDEIDKGELYVFT 123
LT +T + + D+ W+ ++K L VFT
Sbjct: 101 -PLTLRWEETRTPESQPDTPPGTPLVSQDEKRDAELPKKRMRKSNPGWENLEK--LLVFT 157
Query: 124 AKGVKSSDKIASFDMDGTLIKTKSGKVHPVDINDWQIAFPSVPQKLKEFLEKDYKIVLFS 183
A GVK K+A FD+DGTLI T+SGKV P +DW+I +P +P+KL+E + YK+V+F+
Sbjct: 158 AAGVKPQGKVAGFDLDGTLITTRSGKVFPTGPSDWRILYPEIPRKLRELEAEGYKLVIFT 217
Query: 184 NQAPIGNGRVKIEDFKKKIESIVQKLNVPVQAYIATGKGIYRKPRIGMWMTLTEKKNDGV 243
NQ IG G++ E+FK K+E++V+KL VP Q +AT G+YRKP GMW L E+ NDG
Sbjct: 218 NQMSIGRGKLPAEEFKAKVEAVVEKLGVPFQVLVATHAGLYRKPVTGMWDHLQEQANDGT 277
Query: 244 KVDMNQSFYCGDAAGRVANWAPG-KKKDHSLADKLFAENLELKFYTPEQFFLGHSIANVL 302
+ + S + GDAAGR ANWAPG KKKD S AD+LFA NL L F TPE+FFL A
Sbjct: 278 PISIGDSIFVGDAAGRPANWAPGRKKKDFSCADRLFALNLGLPFATPEEFFLKWPAAG-- 335
Query: 303 MSKPEFHPKEVTVE-----PFNNKLISKDKEILILVGFPGSGKSYLAKQIETKSNHKYAT 357
P F P+ V+ P + L+S E+++ VGFPG+GKS K+ + + + T
Sbjct: 336 FELPAFDPRTVSRSGPLCLPESRALLSASPEVVVAVGFPGAGKSTFLKKHLVSAGYVHVT 395
Query: 358 VCR 360
R
Sbjct: 396 GTR 398
>BX538161-1|CAD98041.1| 292|Homo sapiens hypothetical protein
protein.
Length = 292
Score = 49.6 bits (113), Expect = 2e-05
Identities = 23/79 (29%), Positives = 45/79 (56%)
Query: 4 VSLKADCEKCHVEIKQLGVNASGLDGFALKKDEVYEIGHGSTIEILLNNHVHILEFDPPP 63
V LKA+C K +V++KQ+GVN + +D + KD+ ++ G + ++ + +I+EF+
Sbjct: 45 VQLKAECNKGYVKVKQVGVNPTSIDSVVIGKDQEVKLQPGQVLHMVNELYPYIVEFEEEA 104
Query: 64 ESLTTSQNQTFKRKLEDDS 82
++ ++ KR DS
Sbjct: 105 KNPGLETHRKRKRSGNSDS 123
>BC104881-1|AAI04882.1| 342|Homo sapiens aprataxin, isoform a
protein.
Length = 342
Score = 49.6 bits (113), Expect = 2e-05
Identities = 23/79 (29%), Positives = 45/79 (56%)
Query: 4 VSLKADCEKCHVEIKQLGVNASGLDGFALKKDEVYEIGHGSTIEILLNNHVHILEFDPPP 63
V LKA+C K +V++KQ+GVN + +D + KD+ ++ G + ++ + +I+EF+
Sbjct: 45 VQLKAECNKGYVKVKQVGVNPTSIDSVVIGKDQEVKLQPGQVLHMVNELYPYIVEFEEEA 104
Query: 64 ESLTTSQNQTFKRKLEDDS 82
++ ++ KR DS
Sbjct: 105 KNPGLETHRKRKRSGNSDS 123
>AY302071-1|AAQ74134.1| 192|Homo sapiens aprataxin variant LE5
protein.
Length = 192
Score = 49.6 bits (113), Expect = 2e-05
Identities = 23/79 (29%), Positives = 45/79 (56%)
Query: 4 VSLKADCEKCHVEIKQLGVNASGLDGFALKKDEVYEIGHGSTIEILLNNHVHILEFDPPP 63
V LKA+C K +V++KQ+GVN + +D + KD+ ++ G + ++ + +I+EF+
Sbjct: 45 VQLKAECNKGYVKVKQVGVNPTSIDSVVIGKDQEVKLQPGQVLHMVNELYPYIVEFEEEA 104
Query: 64 ESLTTSQNQTFKRKLEDDS 82
++ ++ KR DS
Sbjct: 105 KNPGLETHRKRKRSGNSDS 123
>AY302067-1|AAQ74130.1| 342|Homo sapiens aprataxin protein.
Length = 342
Score = 49.6 bits (113), Expect = 2e-05
Identities = 23/79 (29%), Positives = 45/79 (56%)
Query: 4 VSLKADCEKCHVEIKQLGVNASGLDGFALKKDEVYEIGHGSTIEILLNNHVHILEFDPPP 63
V LKA+C K +V++KQ+GVN + +D + KD+ ++ G + ++ + +I+EF+
Sbjct: 45 VQLKAECNKGYVKVKQVGVNPTSIDSVVIGKDQEVKLQPGQVLHMVNELYPYIVEFEEEA 104
Query: 64 ESLTTSQNQTFKRKLEDDS 82
++ ++ KR DS
Sbjct: 105 KNPGLETHRKRKRSGNSDS 123
>AY208837-1|AAP86327.1| 342|Homo sapiens FHA-HIT aberrant isoform
protein.
Length = 342
Score = 49.6 bits (113), Expect = 2e-05
Identities = 23/79 (29%), Positives = 45/79 (56%)
Query: 4 VSLKADCEKCHVEIKQLGVNASGLDGFALKKDEVYEIGHGSTIEILLNNHVHILEFDPPP 63
V LKA+C K +V++KQ+GVN + +D + KD+ ++ G + ++ + +I+EF+
Sbjct: 45 VQLKAECNKGYVKVKQVGVNPTSIDSVVIGKDQEVKLQPGQVLHMVNELYPYIVEFEEEA 104
Query: 64 ESLTTSQNQTFKRKLEDDS 82
++ ++ KR DS
Sbjct: 105 KNPGLETHRKRKRSGNSDS 123
>AY208836-1|AAP86326.1| 342|Homo sapiens FHA-HIT aberrant isoform
protein.
Length = 342
Score = 49.6 bits (113), Expect = 2e-05
Identities = 23/79 (29%), Positives = 45/79 (56%)
Query: 4 VSLKADCEKCHVEIKQLGVNASGLDGFALKKDEVYEIGHGSTIEILLNNHVHILEFDPPP 63
V LKA+C K +V++KQ+GVN + +D + KD+ ++ G + ++ + +I+EF+
Sbjct: 45 VQLKAECNKGYVKVKQVGVNPTSIDSVVIGKDQEVKLQPGQVLHMVNELYPYIVEFEEEA 104
Query: 64 ESLTTSQNQTFKRKLEDDS 82
++ ++ KR DS
Sbjct: 105 KNPGLETHRKRKRSGNSDS 123
>AY208834-1|AAP86324.1| 337|Homo sapiens FHA-HIT isoform protein.
Length = 337
Score = 49.6 bits (113), Expect = 2e-05
Identities = 23/79 (29%), Positives = 45/79 (56%)
Query: 4 VSLKADCEKCHVEIKQLGVNASGLDGFALKKDEVYEIGHGSTIEILLNNHVHILEFDPPP 63
V LKA+C K +V++KQ+GVN + +D + KD+ ++ G + ++ + +I+EF+
Sbjct: 59 VQLKAECNKGYVKVKQVGVNPTSIDSVVIGKDQEVKLQPGQVLHMVNELYPYIVEFEEEA 118
Query: 64 ESLTTSQNQTFKRKLEDDS 82
++ ++ KR DS
Sbjct: 119 KNPGLETHRKRKRSGNSDS 137
>AY208829-1|AAP86319.1| 356|Homo sapiens FHA-HIT short isoform
protein.
Length = 356
Score = 49.6 bits (113), Expect = 2e-05
Identities = 23/79 (29%), Positives = 45/79 (56%)
Query: 4 VSLKADCEKCHVEIKQLGVNASGLDGFALKKDEVYEIGHGSTIEILLNNHVHILEFDPPP 63
V LKA+C K +V++KQ+GVN + +D + KD+ ++ G + ++ + +I+EF+
Sbjct: 59 VQLKAECNKGYVKVKQVGVNPTSIDSVVIGKDQEVKLQPGQVLHMVNELYPYIVEFEEEA 118
Query: 64 ESLTTSQNQTFKRKLEDDS 82
++ ++ KR DS
Sbjct: 119 KNPGLETHRKRKRSGNSDS 137
>AY040777-1|AAK91768.1| 356|Homo sapiens forkhead-associated domain
histidine-triad like protein protein.
Length = 356
Score = 49.6 bits (113), Expect = 2e-05
Identities = 23/79 (29%), Positives = 45/79 (56%)
Query: 4 VSLKADCEKCHVEIKQLGVNASGLDGFALKKDEVYEIGHGSTIEILLNNHVHILEFDPPP 63
V LKA+C K +V++KQ+GVN + +D + KD+ ++ G + ++ + +I+EF+
Sbjct: 59 VQLKAECNKGYVKVKQVGVNPTSIDSVVIGKDQEVKLQPGQVLHMVNELYPYIVEFEEEA 118
Query: 64 ESLTTSQNQTFKRKLEDDS 82
++ ++ KR DS
Sbjct: 119 KNPGLETHRKRKRSGNSDS 137
>AL353717-8|CAI15735.1| 342|Homo sapiens aprataxin protein.
Length = 342
Score = 49.6 bits (113), Expect = 2e-05
Identities = 23/79 (29%), Positives = 45/79 (56%)
Query: 4 VSLKADCEKCHVEIKQLGVNASGLDGFALKKDEVYEIGHGSTIEILLNNHVHILEFDPPP 63
V LKA+C K +V++KQ+GVN + +D + KD+ ++ G + ++ + +I+EF+
Sbjct: 45 VQLKAECNKGYVKVKQVGVNPTSIDSVVIGKDQEVKLQPGQVLHMVNELYPYIVEFEEEA 104
Query: 64 ESLTTSQNQTFKRKLEDDS 82
++ ++ KR DS
Sbjct: 105 KNPGLETHRKRKRSGNSDS 123
>AL353717-3|CAI15730.1| 306|Homo sapiens aprataxin protein.
Length = 306
Score = 49.6 bits (113), Expect = 2e-05
Identities = 23/79 (29%), Positives = 45/79 (56%)
Query: 4 VSLKADCEKCHVEIKQLGVNASGLDGFALKKDEVYEIGHGSTIEILLNNHVHILEFDPPP 63
V LKA+C K +V++KQ+GVN + +D + KD+ ++ G + ++ + +I+EF+
Sbjct: 59 VQLKAECNKGYVKVKQVGVNPTSIDSVVIGKDQEVKLQPGQVLHMVNELYPYIVEFEEEA 118
Query: 64 ESLTTSQNQTFKRKLEDDS 82
++ ++ KR DS
Sbjct: 119 KNPGLETHRKRKRSGNSDS 137
>AL353717-2|CAI15728.1| 356|Homo sapiens aprataxin protein.
Length = 356
Score = 49.6 bits (113), Expect = 2e-05
Identities = 23/79 (29%), Positives = 45/79 (56%)
Query: 4 VSLKADCEKCHVEIKQLGVNASGLDGFALKKDEVYEIGHGSTIEILLNNHVHILEFDPPP 63
V LKA+C K +V++KQ+GVN + +D + KD+ ++ G + ++ + +I+EF+
Sbjct: 59 VQLKAECNKGYVKVKQVGVNPTSIDSVVIGKDQEVKLQPGQVLHMVNELYPYIVEFEEEA 118
Query: 64 ESLTTSQNQTFKRKLEDDS 82
++ ++ KR DS
Sbjct: 119 KNPGLETHRKRKRSGNSDS 137
>AL162590-3|CAI15551.1| 306|Homo sapiens aprataxin protein.
Length = 306
Score = 49.6 bits (113), Expect = 2e-05
Identities = 23/79 (29%), Positives = 45/79 (56%)
Query: 4 VSLKADCEKCHVEIKQLGVNASGLDGFALKKDEVYEIGHGSTIEILLNNHVHILEFDPPP 63
V LKA+C K +V++KQ+GVN + +D + KD+ ++ G + ++ + +I+EF+
Sbjct: 59 VQLKAECNKGYVKVKQVGVNPTSIDSVVIGKDQEVKLQPGQVLHMVNELYPYIVEFEEEA 118
Query: 64 ESLTTSQNQTFKRKLEDDS 82
++ ++ KR DS
Sbjct: 119 KNPGLETHRKRKRSGNSDS 137
>AL162590-2|CAI15549.1| 356|Homo sapiens aprataxin protein.
Length = 356
Score = 49.6 bits (113), Expect = 2e-05
Identities = 23/79 (29%), Positives = 45/79 (56%)
Query: 4 VSLKADCEKCHVEIKQLGVNASGLDGFALKKDEVYEIGHGSTIEILLNNHVHILEFDPPP 63
V LKA+C K +V++KQ+GVN + +D + KD+ ++ G + ++ + +I+EF+
Sbjct: 59 VQLKAECNKGYVKVKQVGVNPTSIDSVVIGKDQEVKLQPGQVLHMVNELYPYIVEFEEEA 118
Query: 64 ESLTTSQNQTFKRKLEDDS 82
++ ++ KR DS
Sbjct: 119 KNPGLETHRKRKRSGNSDS 137
>AJ565854-1|CAD92458.1| 247|Homo sapiens aprataxin protein.
Length = 247
Score = 49.6 bits (113), Expect = 2e-05
Identities = 23/79 (29%), Positives = 45/79 (56%)
Query: 4 VSLKADCEKCHVEIKQLGVNASGLDGFALKKDEVYEIGHGSTIEILLNNHVHILEFDPPP 63
V LKA+C K +V++KQ+GVN + +D + KD+ ++ G + ++ + +I+EF+
Sbjct: 45 VQLKAECNKGYVKVKQVGVNPTSIDSVVIGKDQEVKLQPGQVLHMVNELYPYIVEFEEEA 104
Query: 64 ESLTTSQNQTFKRKLEDDS 82
++ ++ KR DS
Sbjct: 105 KNPGLETHRKRKRSGNSDS 123
>AY208831-1|AAP86321.1| 284|Homo sapiens FHA-HIT isoform protein.
Length = 284
Score = 41.1 bits (92), Expect = 0.008
Identities = 16/45 (35%), Positives = 29/45 (64%)
Query: 4 VSLKADCEKCHVEIKQLGVNASGLDGFALKKDEVYEIGHGSTIEI 48
V LKA+C K +V++KQ+GVN + +D + KD+ ++ G + +
Sbjct: 59 VQLKAECNKGYVKVKQVGVNPTSIDSVVIGKDQEVKLQPGQVLHM 103
>AL353717-1|CAI15729.1| 280|Homo sapiens aprataxin protein.
Length = 280
Score = 41.1 bits (92), Expect = 0.008
Identities = 16/45 (35%), Positives = 29/45 (64%)
Query: 4 VSLKADCEKCHVEIKQLGVNASGLDGFALKKDEVYEIGHGSTIEI 48
V LKA+C K +V++KQ+GVN + +D + KD+ ++ G + +
Sbjct: 59 VQLKAECNKGYVKVKQVGVNPTSIDSVVIGKDQEVKLQPGQVLHM 103
>AL162590-1|CAI15550.1| 280|Homo sapiens aprataxin protein.
Length = 280
Score = 41.1 bits (92), Expect = 0.008
Identities = 16/45 (35%), Positives = 29/45 (64%)
Query: 4 VSLKADCEKCHVEIKQLGVNASGLDGFALKKDEVYEIGHGSTIEI 48
V LKA+C K +V++KQ+GVN + +D + KD+ ++ G + +
Sbjct: 59 VQLKAECNKGYVKVKQVGVNPTSIDSVVIGKDQEVKLQPGQVLHM 103
>BC047932-1|AAH47932.1| 437|Homo sapiens vacuolar protein sorting 4
homolog A (S. cerevisiae) protein.
Length = 437
Score = 37.5 bits (83), Expect = 0.095
Identities = 20/62 (32%), Positives = 35/62 (56%), Gaps = 6/62 (9%)
Query: 330 LILVGFPGSGKSYLAKQIETKSNHK--YATVCRDILGSW----QKCAAEATKLLQQGKSV 383
++L G PG+GKSYLAK + T++N+ ++ D++ W +K +L +Q K
Sbjct: 163 ILLFGPPGTGKSYLAKAVATEANNSTFFSVSSSDLMSKWLGESEKLVKNLFELARQHKPS 222
Query: 384 IV 385
I+
Sbjct: 223 II 224
>AF282903-1|AAG01470.1| 437|Homo sapiens vacuolar protein sorting
factor 4A protein.
Length = 437
Score = 37.5 bits (83), Expect = 0.095
Identities = 20/62 (32%), Positives = 35/62 (56%), Gaps = 6/62 (9%)
Query: 330 LILVGFPGSGKSYLAKQIETKSNHK--YATVCRDILGSW----QKCAAEATKLLQQGKSV 383
++L G PG+GKSYLAK + T++N+ ++ D++ W +K +L +Q K
Sbjct: 163 ILLFGPPGTGKSYLAKAVATEANNSTFFSVSSSDLMSKWLGESEKLVKNLFELARQHKPS 222
Query: 384 IV 385
I+
Sbjct: 223 II 224
>AF255952-1|AAK52408.1| 437|Homo sapiens vacuolar protein sorting
VPS4-1 protein.
Length = 437
Score = 37.5 bits (83), Expect = 0.095
Identities = 20/62 (32%), Positives = 35/62 (56%), Gaps = 6/62 (9%)
Query: 330 LILVGFPGSGKSYLAKQIETKSNHK--YATVCRDILGSW----QKCAAEATKLLQQGKSV 383
++L G PG+GKSYLAK + T++N+ ++ D++ W +K +L +Q K
Sbjct: 163 ILLFGPPGTGKSYLAKAVATEANNSTFFSVSSSDLMSKWLGESEKLVKNLFELARQHKPS 222
Query: 384 IV 385
I+
Sbjct: 223 II 224
>AF159063-1|AAD49227.1| 437|Homo sapiens SKD1-homolog protein.
Length = 437
Score = 37.5 bits (83), Expect = 0.095
Identities = 20/62 (32%), Positives = 35/62 (56%), Gaps = 6/62 (9%)
Query: 330 LILVGFPGSGKSYLAKQIETKSNHK--YATVCRDILGSW----QKCAAEATKLLQQGKSV 383
++L G PG+GKSYLAK + T++N+ ++ D++ W +K +L +Q K
Sbjct: 163 ILLFGPPGTGKSYLAKAVATEANNSTFFSVSSSDLMSKWLGESEKLVKNLFELARQHKPS 222
Query: 384 IV 385
I+
Sbjct: 223 II 224
>AF155740-1|AAD42971.1| 432|Homo sapiens vacuolar sorting protein 4
protein.
Length = 432
Score = 37.5 bits (83), Expect = 0.095
Identities = 20/62 (32%), Positives = 35/62 (56%), Gaps = 6/62 (9%)
Query: 330 LILVGFPGSGKSYLAKQIETKSNHK--YATVCRDILGSW----QKCAAEATKLLQQGKSV 383
++L G PG+GKSYLAK + T++N+ ++ D++ W +K +L +Q K
Sbjct: 158 ILLFGPPGTGKSYLAKAVATEANNSTFFSVSSSDLMSKWLGESEKLVKNLFELARQHKPS 217
Query: 384 IV 385
I+
Sbjct: 218 II 219
>AF112215-1|AAF17203.1| 437|Homo sapiens SKD1 protein protein.
Length = 437
Score = 37.5 bits (83), Expect = 0.095
Identities = 20/62 (32%), Positives = 35/62 (56%), Gaps = 6/62 (9%)
Query: 330 LILVGFPGSGKSYLAKQIETKSNHK--YATVCRDILGSW----QKCAAEATKLLQQGKSV 383
++L G PG+GKSYLAK + T++N+ ++ D++ W +K +L +Q K
Sbjct: 163 ILLFGPPGTGKSYLAKAVATEANNSTFFSVSSSDLMSKWLGESEKLVKNLFELARQHKPS 222
Query: 384 IV 385
I+
Sbjct: 223 II 224
>BC039574-1|AAH39574.1| 444|Homo sapiens vacuolar protein sorting 4
homolog B (S. cerevisiae) protein.
Length = 444
Score = 36.3 bits (80), Expect = 0.22
Identities = 19/62 (30%), Positives = 35/62 (56%), Gaps = 6/62 (9%)
Query: 330 LILVGFPGSGKSYLAKQIETKSNHK--YATVCRDILGSW----QKCAAEATKLLQQGKSV 383
++L G PG+GKSYLAK + T++N+ ++ D++ W +K +L ++ K
Sbjct: 170 ILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENKPS 229
Query: 384 IV 385
I+
Sbjct: 230 II 231
>AY232629-1|AAP59551.1| 444|Homo sapiens cell migration-inducing 1
protein.
Length = 444
Score = 36.3 bits (80), Expect = 0.22
Identities = 19/62 (30%), Positives = 35/62 (56%), Gaps = 6/62 (9%)
Query: 330 LILVGFPGSGKSYLAKQIETKSNHK--YATVCRDILGSW----QKCAAEATKLLQQGKSV 383
++L G PG+GKSYLAK + T++N+ ++ D++ W +K +L ++ K
Sbjct: 170 ILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENKPS 229
Query: 384 IV 385
I+
Sbjct: 230 II 231
>AF282904-1|AAG01471.1| 444|Homo sapiens vacuolar protein sorting
factor 4B protein.
Length = 444
Score = 36.3 bits (80), Expect = 0.22
Identities = 19/62 (30%), Positives = 35/62 (56%), Gaps = 6/62 (9%)
Query: 330 LILVGFPGSGKSYLAKQIETKSNHK--YATVCRDILGSW----QKCAAEATKLLQQGKSV 383
++L G PG+GKSYLAK + T++N+ ++ D++ W +K +L ++ K
Sbjct: 170 ILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENKPS 229
Query: 384 IV 385
I+
Sbjct: 230 II 231
>AF195514-1|AAG33022.1| 444|Homo sapiens VPS4-2 ATPase protein.
Length = 444
Score = 36.3 bits (80), Expect = 0.22
Identities = 19/62 (30%), Positives = 35/62 (56%), Gaps = 6/62 (9%)
Query: 330 LILVGFPGSGKSYLAKQIETKSNHK--YATVCRDILGSW----QKCAAEATKLLQQGKSV 383
++L G PG+GKSYLAK + T++N+ ++ D++ W +K +L ++ K
Sbjct: 170 ILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENKPS 229
Query: 384 IV 385
I+
Sbjct: 230 II 231
>BC096077-1|AAH96077.1| 271|Homo sapiens PFKFB1 protein protein.
Length = 271
Score = 35.1 bits (77), Expect = 0.51
Identities = 27/108 (25%), Positives = 52/108 (48%), Gaps = 10/108 (9%)
Query: 329 ILILVGFPGSGKSYLAKQIETKSNHKYATVCRDILGSWQ---KCAAEATKLL------QQ 379
++I+VG P GK+Y++ ++ T+ + T +D + + Q +CA A K + ++
Sbjct: 44 MVIMVGLPARGKTYISTKL-TRYLNWIGTPTKDNMEALQIRKQCALAALKDVHNYLSHEE 102
Query: 380 GKSVIVDSTNPDVESRSRWTSLAKQNKVDCRCAKMATSKAHAQHNNKF 427
G + D+TN E RS AK++ C +M + + +F
Sbjct: 103 GHVAVFDATNTTRERRSLILQFAKEHGYKGVCEEMTYEEIQEHYPEEF 150
>AF132747-1|AAL75948.1| 437|Homo sapiens SKD2 protein protein.
Length = 437
Score = 34.3 bits (75), Expect = 0.88
Identities = 19/61 (31%), Positives = 33/61 (54%), Gaps = 6/61 (9%)
Query: 331 ILVGFPGSGKSYLAKQIETKSNHK--YATVCRDILGSW----QKCAAEATKLLQQGKSVI 384
+L G PG+GKSYLAK + T++ + ++ D++ W +K +L +Q K I
Sbjct: 164 LLFGPPGTGKSYLAKAVATEATNSTFFSVSSSDLMSKWLGESEKLVKNLFELARQHKPSI 223
Query: 385 V 385
+
Sbjct: 224 I 224
>AC007956-2|AAF61275.1| 1822|Homo sapiens unknown protein.
Length = 1822
Score = 33.1 bits (72), Expect = 2.0
Identities = 31/112 (27%), Positives = 52/112 (46%), Gaps = 6/112 (5%)
Query: 326 DKEILILVGFPGSGKSYLAKQIETKSNHKYATVCRDILGSWQKCAAEATKLLQQG--KSV 383
++ ++I+ G PGSGK+++AK I A + S K K L G +
Sbjct: 1638 ERIVVIMRGLPGSGKTHVAKLIRVMEYEYEAEMEETYRTSMFK---TFKKTLDDGFFPFI 1694
Query: 384 IVDSTNPDVESRSRWTSLAKQNKVDCRCAKM-ATSKAHAQHNNKFRELMKIN 434
I+D+ N V ++ S AK + A+M A ++ + N R+L +IN
Sbjct: 1695 ILDAINDRVRHFDQFWSAAKTKGFEVYLAEMSADNQTCGKRNIHGRKLKEIN 1746
>AL583807-2|CAH69983.1| 1587|Homo sapiens laminin, gamma 3 protein.
Length = 1587
Score = 31.9 bits (69), Expect = 4.7
Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Query: 363 LGSWQKCAAEATKLLQQGKSVIVDSTNPDVESRSRWTSL-AKQNKVDCRCAKMATSKA 419
+ SWQ A EA + LQ + T P ++RSR T+ A Q + R A S +
Sbjct: 1279 VASWQHMATEAARTLQTAAQATLRQTEPLTKARSRLTATSASQLHQEARAALTQASSS 1336
>AL355872-3|CAI39529.1| 1587|Homo sapiens laminin, gamma 3 protein.
Length = 1587
Score = 31.9 bits (69), Expect = 4.7
Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Query: 363 LGSWQKCAAEATKLLQQGKSVIVDSTNPDVESRSRWTSL-AKQNKVDCRCAKMATSKA 419
+ SWQ A EA + LQ + T P ++RSR T+ A Q + R A S +
Sbjct: 1279 VASWQHMATEAARTLQTAAQATLRQTEPLTKARSRLTATSASQLHQEARAALTQASSS 1336
>BX276089-2|CAI16432.1| 311|Homo sapiens katanin p60
(ATPase-containing) subunit A 1 protein.
Length = 311
Score = 31.1 bits (67), Expect = 8.2
Identities = 17/54 (31%), Positives = 32/54 (59%), Gaps = 2/54 (3%)
Query: 325 KDKEILILVGFPGSGKSYLAKQIETKSNHKYATVCRDILGSWQKCAAEATKLLQ 378
++++ +++VG PG+GK+ LAK + T+ + V L S K E+ KL++
Sbjct: 164 REEKGVLMVGPPGTGKTLLAKAVATECKTTFFNVSSSTLTS--KYRGESEKLVR 215
>BC050428-1|AAH50428.1| 311|Homo sapiens KATNA1 protein protein.
Length = 311
Score = 31.1 bits (67), Expect = 8.2
Identities = 17/54 (31%), Positives = 32/54 (59%), Gaps = 2/54 (3%)
Query: 325 KDKEILILVGFPGSGKSYLAKQIETKSNHKYATVCRDILGSWQKCAAEATKLLQ 378
++++ +++VG PG+GK+ LAK + T+ + V L S K E+ KL++
Sbjct: 164 REEKGVLMVGPPGTGKTLLAKAVATECKTTFFNVSSSTLTS--KYRGESEKLVR 215
>BC007426-1|AAH07426.1| 172|Homo sapiens TAF9 RNA polymerase II,
TATA box binding protein (TBP)-associated factor, 32kDa
protein.
Length = 172
Score = 31.1 bits (67), Expect = 8.2
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 330 LILVGFPGSGKSYLAKQIETKSNHKYATV 358
++L G PG GK+ L K++ +KS KY V
Sbjct: 6 ILLTGTPGVGKTTLGKELASKSGLKYINV 34
>BC007349-1|AAH07349.1| 172|Homo sapiens TAF9 RNA polymerase II,
TATA box binding protein (TBP)-associated factor, 32kDa
protein.
Length = 172
Score = 31.1 bits (67), Expect = 8.2
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 330 LILVGFPGSGKSYLAKQIETKSNHKYATV 358
++L G PG GK+ L K++ +KS KY V
Sbjct: 6 ILLTGTPGVGKTTLGKELASKSGLKYINV 34
>AL078581-2|CAI19504.1| 311|Homo sapiens katanin p60
(ATPase-containing) subunit A 1 protein.
Length = 311
Score = 31.1 bits (67), Expect = 8.2
Identities = 17/54 (31%), Positives = 32/54 (59%), Gaps = 2/54 (3%)
Query: 325 KDKEILILVGFPGSGKSYLAKQIETKSNHKYATVCRDILGSWQKCAAEATKLLQ 378
++++ +++VG PG+GK+ LAK + T+ + V L S K E+ KL++
Sbjct: 164 REEKGVLMVGPPGTGKTLLAKAVATECKTTFFNVSSSTLTS--KYRGESEKLVR 215
>AJ878881-1|CAI48031.1| 172|Homo sapiens coilin-interacting nulcear
ATPase protein protein.
Length = 172
Score = 31.1 bits (67), Expect = 8.2
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 330 LILVGFPGSGKSYLAKQIETKSNHKYATV 358
++L G PG GK+ L K++ +KS KY V
Sbjct: 6 ILLTGTPGVGKTTLGKELASKSGLKYINV 34
>AJ878880-1|CAI48030.1| 172|Homo sapiens coilin-interacting nuclear
ATPase protein protein.
Length = 172
Score = 31.1 bits (67), Expect = 8.2
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 330 LILVGFPGSGKSYLAKQIETKSNHKYATV 358
++L G PG GK+ L K++ +KS KY V
Sbjct: 6 ILLTGTPGVGKTTLGKELASKSGLKYINV 34
>AJ246003-1|CAB60208.1| 616|Homo sapiens spastin protein protein.
Length = 616
Score = 31.1 bits (67), Expect = 8.2
Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Query: 330 LILVGFPGSGKSYLAKQIETKSNHKYATVCRDILGSWQKCAAEATKLLQ 378
L+L G PG+GK+ LAK + +SN + + L S K E KL++
Sbjct: 378 LLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTS--KYVGEGEKLVR 424
>AJ246001-1|CAB60141.1| 616|Homo sapiens spastin protein protein.
Length = 616
Score = 31.1 bits (67), Expect = 8.2
Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Query: 330 LILVGFPGSGKSYLAKQIETKSNHKYATVCRDILGSWQKCAAEATKLLQ 378
L+L G PG+GK+ LAK + +SN + + L S K E KL++
Sbjct: 378 LLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTS--KYVGEGEKLVR 424
>AF151895-1|AAD34132.1| 172|Homo sapiens CGI-137 protein protein.
Length = 172
Score = 31.1 bits (67), Expect = 8.2
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 330 LILVGFPGSGKSYLAKQIETKSNHKYATV 358
++L G PG GK+ L K++ +KS KY V
Sbjct: 6 ILLTGTPGVGKTTLGKELASKSGLKYINV 34
>AF110777-1|AAF14860.1| 172|Homo sapiens adrenal gland protein
AD-004 protein.
Length = 172
Score = 31.1 bits (67), Expect = 8.2
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 330 LILVGFPGSGKSYLAKQIETKSNHKYATV 358
++L G PG GK+ L K++ +KS KY V
Sbjct: 6 ILLTGTPGVGKTTLGKELASKSGLKYINV 34
>AB029006-1|BAA83035.1| 584|Homo sapiens KIAA1083 protein protein.
Length = 584
Score = 31.1 bits (67), Expect = 8.2
Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Query: 330 LILVGFPGSGKSYLAKQIETKSNHKYATVCRDILGSWQKCAAEATKLLQ 378
L+L G PG+GK+ LAK + +SN + + L S K E KL++
Sbjct: 346 LLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTS--KYVGEGEKLVR 392
Database: human
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 73,234,838
Number of sequences in database: 224,733
Lambda K H
0.316 0.133 0.392
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 62,944,968
Number of Sequences: 224733
Number of extensions: 2447070
Number of successful extensions: 6009
Number of sequences better than 10.0: 53
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 5936
Number of HSP's gapped (non-prelim): 60
length of query: 447
length of database: 73,234,838
effective HSP length: 92
effective length of query: 355
effective length of database: 52,559,402
effective search space: 18658587710
effective search space used: 18658587710
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 67 (31.1 bits)
- SilkBase 1999-2023 -