GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA005374-TA|BGIBMGA005374-PA|IPR008984|SMAD/FHA,
IPR006551|DNA 3-phosphatase, IPR006549|HAD-superfamily hydrolase,
subfamily IIIA, IPR013954|Polynucleotide kinase 3 phosphatase, central
region
         (447 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              24   2.2  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   6.9  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   6.9  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               22   9.1  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 24.2 bits (50), Expect = 2.2
 Identities = 9/28 (32%), Positives = 17/28 (60%)

Query: 7    KADCEKCHVEIKQLGVNASGLDGFALKK 34
            +A+C++  +  +  GVNA G DG   ++
Sbjct: 1885 EAECDRDQLVNRNYGVNARGKDGMTTEE 1912


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.6 bits (46), Expect = 6.9
 Identities = 12/30 (40%), Positives = 18/30 (60%)

Query: 27  LDGFALKKDEVYEIGHGSTIEILLNNHVHI 56
           LDGFAL  +  + IG   T+   + +HV+I
Sbjct: 457 LDGFALPTNGRFMIGQYVTVHGDVISHVNI 486


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.6 bits (46), Expect = 6.9
 Identities = 12/30 (40%), Positives = 18/30 (60%)

Query: 27  LDGFALKKDEVYEIGHGSTIEILLNNHVHI 56
           LDGFAL  +  + IG   T+   + +HV+I
Sbjct: 457 LDGFALPTNGRFMIGQYVTVHGDVISHVNI 486


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 22.2 bits (45), Expect = 9.1
 Identities = 13/48 (27%), Positives = 18/48 (37%)

Query: 377 LQQGKSVIVDSTNPDVESRSRWTSLAKQNKVDCRCAKMATSKAHAQHN 424
           LQ   +++VD    D+    R T       V     K   SK   QH+
Sbjct: 319 LQHNLNILVDMCEQDIIQNDRRTRHLSDRVVALEAEKKNLSKVIDQHS 366


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.316    0.133    0.392 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 126,789
Number of Sequences: 429
Number of extensions: 5525
Number of successful extensions: 14
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 10
Number of HSP's gapped (non-prelim): 4
length of query: 447
length of database: 140,377
effective HSP length: 60
effective length of query: 387
effective length of database: 114,637
effective search space: 44364519
effective search space used: 44364519
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 45 (22.2 bits)