GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA005372-TA|BGIBMGA005372-PA|IPR000886|Endoplasmic
reticulum targeting sequence
         (184 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyce...    27   1.3  
SPAC4H3.05 |srs2||ATP-dependent DNA helicase, UvrD subfamily|Sch...    27   2.2  
SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolo...    25   5.1  

>SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2100

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 11/26 (42%), Positives = 16/26 (61%)

Query: 14  SLCSAKKAAQKPDWAKKDIRDFSDAD 39
           +L +A+KA    DW  K + +F DAD
Sbjct: 544 ALAAARKALSFQDWLDKKMLEFEDAD 569


>SPAC4H3.05 |srs2||ATP-dependent DNA helicase, UvrD
           subfamily|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 887

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 27/103 (26%), Positives = 46/103 (44%), Gaps = 11/103 (10%)

Query: 26  DWAKKDIRDFSDADMERLLDQWXXXXXXXXXXXXXXHLRKPPALD-LTKMDMSNPEAVLQ 84
           +W   D  D + A M+RLLD                 L    AL+ +TK+  SN   V  
Sbjct: 112 NWLIADRND-TQAIMKRLLDSLKKAKNPIASGIRGQELTPQNALNRITKLK-SNGLLV-- 167

Query: 85  ATKKGQTLMMFVSVANKPSRA----RTEEITKIWQTSLWSNHI 123
             K G   +  ++   +P +     ++ E+ +++QTSLW N++
Sbjct: 168 --KPGMDQLSLINGLEEPPKELQSHQSVELYRLYQTSLWKNNL 208


>SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolog
           3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 925

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 10/31 (32%), Positives = 18/31 (58%)

Query: 95  FVSVANKPSRARTEEITKIWQTSLWSNHIQA 125
           ++S+  KP+ A  E I  +WQ  L++   +A
Sbjct: 417 YISIVQKPNIAFPEIILFLWQAILYNKRFRA 447


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.130    0.393 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 694,445
Number of Sequences: 5004
Number of extensions: 20377
Number of successful extensions: 45
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 43
Number of HSP's gapped (non-prelim): 3
length of query: 184
length of database: 2,362,478
effective HSP length: 69
effective length of query: 115
effective length of database: 2,017,202
effective search space: 231978230
effective search space used: 231978230
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 51 (24.6 bits)