GeneModel BLAST Result against human

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA005372-TA|BGIBMGA005372-PA|IPR000886|Endoplasmic
reticulum targeting sequence
         (184 letters)

Database: human 
           224,733 sequences; 73,234,838 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D42039-1|BAA07640.2|  235|Homo sapiens KIAA0081 protein.              130   2e-30
BC012746-1|AAH12746.1|  234|Homo sapiens MESDC2 protein protein.      130   2e-30
BC009210-1|AAH09210.1|  234|Homo sapiens MESDC2 protein protein.      130   2e-30
AY359110-1|AAQ89468.1|  234|Homo sapiens Y081 protein.                130   2e-30
BC040534-1|AAH40534.1|  321|Homo sapiens RAPGEF3 protein protein.      29   7.1  

>D42039-1|BAA07640.2|  235|Homo sapiens KIAA0081 protein.
          Length = 235

 Score =  130 bits (315), Expect = 2e-30
 Identities = 65/154 (42%), Positives = 87/154 (56%), Gaps = 1/154 (0%)

Query: 25  PDWAKKDIRDFSDADMERLLDQWXXXXXXXXXXXXXXHLRKPPALDLTKMDMSNPEAVLQ 84
           P   KKDIRD++DADM RLL+QW              H R    +D +K+D S PE++L+
Sbjct: 49  PRKKKKDIRDYNDADMARLLEQWEKDDDIEEGDLPE-HKRPSAPVDFSKIDPSKPESILK 107

Query: 85  ATKKGQTLMMFVSVANKPSRARTEEITKIWQTSLWSNHIQAERYLIDDDRAIFMFKDGSQ 144
            TKKG+TLMMFV+V+  P+   TEEIT +WQ SL++ +   +R+++  DRAIFM +DGS 
Sbjct: 108 MTKKGKTLMMFVTVSGSPTEKETEEITSLWQGSLFNANYDVQRFIVGSDRAIFMLRDGSY 167

Query: 145 AWTAXXXXXXXXXXXXXXXXSQTYPGKKPDIKNK 178
           AW                   Q YPGK    K K
Sbjct: 168 AWEIKDFLVGQDRCADVTLEGQVYPGKGGGSKEK 201


>BC012746-1|AAH12746.1|  234|Homo sapiens MESDC2 protein protein.
          Length = 234

 Score =  130 bits (315), Expect = 2e-30
 Identities = 65/154 (42%), Positives = 87/154 (56%), Gaps = 1/154 (0%)

Query: 25  PDWAKKDIRDFSDADMERLLDQWXXXXXXXXXXXXXXHLRKPPALDLTKMDMSNPEAVLQ 84
           P   KKDIRD++DADM RLL+QW              H R    +D +K+D S PE++L+
Sbjct: 48  PRKKKKDIRDYNDADMARLLEQWEKDDDIEEGDLPE-HKRPSAPVDFSKIDPSKPESILK 106

Query: 85  ATKKGQTLMMFVSVANKPSRARTEEITKIWQTSLWSNHIQAERYLIDDDRAIFMFKDGSQ 144
            TKKG+TLMMFV+V+  P+   TEEIT +WQ SL++ +   +R+++  DRAIFM +DGS 
Sbjct: 107 MTKKGKTLMMFVTVSGSPTEKETEEITSLWQGSLFNANYDVQRFIVGSDRAIFMLRDGSY 166

Query: 145 AWTAXXXXXXXXXXXXXXXXSQTYPGKKPDIKNK 178
           AW                   Q YPGK    K K
Sbjct: 167 AWEIKDFLVGQDRCADVTLEGQVYPGKGGGSKEK 200


>BC009210-1|AAH09210.1|  234|Homo sapiens MESDC2 protein protein.
          Length = 234

 Score =  130 bits (315), Expect = 2e-30
 Identities = 65/154 (42%), Positives = 87/154 (56%), Gaps = 1/154 (0%)

Query: 25  PDWAKKDIRDFSDADMERLLDQWXXXXXXXXXXXXXXHLRKPPALDLTKMDMSNPEAVLQ 84
           P   KKDIRD++DADM RLL+QW              H R    +D +K+D S PE++L+
Sbjct: 48  PRKKKKDIRDYNDADMARLLEQWEKDDDIEEGDLPE-HKRPSAPVDFSKIDPSKPESILK 106

Query: 85  ATKKGQTLMMFVSVANKPSRARTEEITKIWQTSLWSNHIQAERYLIDDDRAIFMFKDGSQ 144
            TKKG+TLMMFV+V+  P+   TEEIT +WQ SL++ +   +R+++  DRAIFM +DGS 
Sbjct: 107 MTKKGKTLMMFVTVSGSPTEKETEEITSLWQGSLFNANYDVQRFIVGSDRAIFMLRDGSY 166

Query: 145 AWTAXXXXXXXXXXXXXXXXSQTYPGKKPDIKNK 178
           AW                   Q YPGK    K K
Sbjct: 167 AWEIKDFLVGQDRCADVTLEGQVYPGKGGGSKEK 200


>AY359110-1|AAQ89468.1|  234|Homo sapiens Y081 protein.
          Length = 234

 Score =  130 bits (315), Expect = 2e-30
 Identities = 65/154 (42%), Positives = 87/154 (56%), Gaps = 1/154 (0%)

Query: 25  PDWAKKDIRDFSDADMERLLDQWXXXXXXXXXXXXXXHLRKPPALDLTKMDMSNPEAVLQ 84
           P   KKDIRD++DADM RLL+QW              H R    +D +K+D S PE++L+
Sbjct: 48  PRKKKKDIRDYNDADMARLLEQWEKDDDIEEGDLPE-HKRPSAPVDFSKIDPSKPESILK 106

Query: 85  ATKKGQTLMMFVSVANKPSRARTEEITKIWQTSLWSNHIQAERYLIDDDRAIFMFKDGSQ 144
            TKKG+TLMMFV+V+  P+   TEEIT +WQ SL++ +   +R+++  DRAIFM +DGS 
Sbjct: 107 MTKKGKTLMMFVTVSGSPTEKETEEITSLWQGSLFNANYDVQRFIVGSDRAIFMLRDGSY 166

Query: 145 AWTAXXXXXXXXXXXXXXXXSQTYPGKKPDIKNK 178
           AW                   Q YPGK    K K
Sbjct: 167 AWEIKDFLVGQDRCADVTLEGQVYPGKGGGSKEK 200


>BC040534-1|AAH40534.1|  321|Homo sapiens RAPGEF3 protein protein.
          Length = 321

 Score = 29.5 bits (63), Expect = 7.1
 Identities = 22/87 (25%), Positives = 44/87 (50%), Gaps = 7/87 (8%)

Query: 65  KPPALDLTKMDMSNPEAVLQATKKGQTLMMFVSVANKPSRARTEEITKIWQTSLWSNHIQ 124
           +P  +   +M+    EAV   +++G   M+ V++   P +   EE+  I++  L   HI+
Sbjct: 146 EPEPVGTHEMEEELAEAVALLSQRGPDAMLTVALRKPPGQRTDEELDLIFEELL---HIK 202

Query: 125 AERYLIDDDR----AIFMFKDGSQAWT 147
           A  +L +  +    A+ +F+  S+A T
Sbjct: 203 AVAHLSNSVKRELAAVLLFEPHSKAGT 229


  Database: human
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 73,234,838
  Number of sequences in database:  224,733
  
Lambda     K      H
   0.318    0.130    0.393 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,840,306
Number of Sequences: 224733
Number of extensions: 654717
Number of successful extensions: 1069
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1061
Number of HSP's gapped (non-prelim): 5
length of query: 184
length of database: 73,234,838
effective HSP length: 86
effective length of query: 98
effective length of database: 53,907,800
effective search space: 5282964400
effective search space used: 5282964400
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 62 (29.1 bits)