GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA005372-TA|BGIBMGA005372-PA|IPR000886|Endoplasmic
reticulum targeting sequence
         (184 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    23   1.8  
U66709-1|AAB07515.1|  182|Apis mellifera ankyrin protein.              22   4.1  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    21   9.5  

>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 23.0 bits (47), Expect = 1.8
 Identities = 9/21 (42%), Positives = 13/21 (61%)

Query: 94  MFVSVANKPSRARTEEITKIW 114
           M VSV +KPS    +  T++W
Sbjct: 402 MTVSVTSKPSTMERQTQTEVW 422


>U66709-1|AAB07515.1|  182|Apis mellifera ankyrin protein.
          Length = 182

 Score = 21.8 bits (44), Expect = 4.1
 Identities = 12/47 (25%), Positives = 22/47 (46%)

Query: 65  KPPALDLTKMDMSNPEAVLQATKKGQTLMMFVSVANKPSRARTEEIT 111
           KP  L +     +N   + Q   +  TL +  S+A   S ++ E++T
Sbjct: 50  KPITLTIPVPQAANKGMINQYGGEQPTLRLLCSIAGGTSESQWEDVT 96


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 20.6 bits (41), Expect = 9.5
 Identities = 5/12 (41%), Positives = 8/12 (66%)

Query: 111 TKIWQTSLWSNH 122
           T  W T +W++H
Sbjct: 54  TNCWVTQIWTDH 65


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.318    0.130    0.393 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 41,734
Number of Sequences: 429
Number of extensions: 1081
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of query: 184
length of database: 140,377
effective HSP length: 54
effective length of query: 130
effective length of database: 117,211
effective search space: 15237430
effective search space used: 15237430
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 41 (20.6 bits)