GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA005368-TA|BGIBMGA005368-PA|undefined
         (93 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.28c |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    24   3.2  
SPCP31B10.05 |||tyrosyl-DNA phosphodiesterase |Schizosaccharomyc...    23   5.6  
SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog Rhp16|Schizo...    23   7.4  

>SPBP8B7.28c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 215

 Score = 24.2 bits (50), Expect = 3.2
 Identities = 10/25 (40%), Positives = 15/25 (60%)

Query: 67  DDSDMFRALYLVQKFKINEHFEEDV 91
           DDSD+   +Y+  K  IN  + +DV
Sbjct: 144 DDSDLDDDIYIHDKQTINSEYADDV 168


>SPCP31B10.05 |||tyrosyl-DNA phosphodiesterase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 536

 Score = 23.4 bits (48), Expect = 5.6
 Identities = 9/19 (47%), Positives = 14/19 (73%)

Query: 5   WGLGKVPVKIKLLERLPQK 23
           WGLGK+   +K+LE+  +K
Sbjct: 279 WGLGKLKKILKMLEKDSKK 297


>SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog
           Rhp16|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 963

 Score = 23.0 bits (47), Expect = 7.4
 Identities = 8/25 (32%), Positives = 16/25 (64%)

Query: 67  DDSDMFRALYLVQKFKINEHFEEDV 91
           ++ D++++LY+  K K N +  E V
Sbjct: 644 EEEDVYQSLYMDSKRKFNTYLAEGV 668


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.321    0.139    0.416 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 378,308
Number of Sequences: 5004
Number of extensions: 11819
Number of successful extensions: 19
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 16
Number of HSP's gapped (non-prelim): 3
length of query: 93
length of database: 2,362,478
effective HSP length: 62
effective length of query: 31
effective length of database: 2,052,230
effective search space: 63619130
effective search space used: 63619130
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 46 (22.6 bits)