Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA005367-TA|BGIBMGA005367-PA|IPR004582|Checkpoint protein
Rad24
(142 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC14C4.13 |rad17||RFC related checkpoint protein Rad17|Schizos... 62 4e-11
SPAC27E2.10c |rfc3|SPAPJ698.01c|DNA replication factor C complex... 34 0.010
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 30 0.12
SPAC2F3.10 |||GARP complex subunit Vps54 |Schizosaccharomyces po... 29 0.28
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 29 0.36
SPAC1834.02 |aro1||pentafunctional aromatic polypeptide Aro1 |Sc... 29 0.36
SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyc... 29 0.36
SPCC24B10.10c |||mitochondrial outer membrane ATPase Msp1 |Schiz... 27 1.1
SPBP23A10.13 |orc4|orp4|origin recognition complex subunit Orc4|... 26 1.9
SPAC2F7.03c |pom1||DYRK family protein kinase Pom1|Schizosacchar... 26 1.9
SPBC23E6.07c |rfc1||DNA replication factor C complex subunit Rfc... 26 1.9
SPAC16A10.04 |rho4||Rho family GTPase Rho4|Schizosaccharomyces p... 26 2.6
SPBC25B2.06c |btb2||BTB/POZ domain protein Btb2|Schizosaccharomy... 25 3.4
SPCC965.04c |||mitochondrial inner membrane i-AAA protease compl... 25 3.4
SPBC19G7.01c |msh2|swi8, mut3, SPBC24C6.12c|MutS protein homolog... 25 3.4
SPBC56F2.07c |||AAA family ATPase, unknown biological role|Schiz... 25 4.5
SPBC18H10.17c |||mitochondrial ribosomal protein subunit Mrp49 |... 25 4.5
SPAC607.10 |spo3||sporulation protein Spo3|Schizosaccharomyces p... 25 5.9
SPBC902.02c |ctf18|chl12|DNA replication factor C complex subuni... 25 5.9
SPCC663.03 |pmd1||leptomycin efflux transporter Pmd1|Schizosacch... 24 7.8
SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyc... 24 7.8
SPBC947.11c |elg1||DNA replication factor C complex subunit Elg1... 24 7.8
SPAC1834.07 |klp3|krp1|kinesin-like protein Klp3|Schizosaccharom... 24 7.8
SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces pomb... 24 7.8
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha... 24 7.8
>SPAC14C4.13 |rad17||RFC related checkpoint protein
Rad17|Schizosaccharomyces pombe|chr 1|||Manual
Length = 606
Score = 61.7 bits (143), Expect = 4e-11
Identities = 25/72 (34%), Positives = 45/72 (62%), Gaps = 2/72 (2%)
Query: 53 PVNINDLAIHNKKVQEVEDWILGNIKKNTSEMLLLTGPVGCGKSVTVLIIAKKHNVKITE 112
P DLA+H K+ ++ W+L + + S +LL+ GP GCGKS V ++AK+ + E
Sbjct: 78 PQKAADLAVHKSKISAIKQWMLTDSLE--SRLLLICGPSGCGKSTAVQVLAKELGYSLIE 135
Query: 113 WITPIDIEFPND 124
W+ P++++ P++
Sbjct: 136 WLNPMNLKEPSN 147
>SPAC27E2.10c |rfc3|SPAPJ698.01c|DNA replication factor C complex
subunit Rfc3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 342
Score = 33.9 bits (74), Expect = 0.010
Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 4/58 (6%)
Query: 48 IRNFDPVNINDLAIHNKKVQEVEDWILGNIKKNTSEMLLLTGPVGCGKSVTVLIIAKK 105
+ + P N+ D+ H + +E +I N +L GP G GK+ T+L A+K
Sbjct: 26 VEKYRPANLEDVVSHKDIISTLEKFI----SSNRVPHMLFYGPPGTGKTSTILACARK 79
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 30.3 bits (65), Expect = 0.12
Identities = 13/39 (33%), Positives = 19/39 (48%)
Query: 59 LAIHNKKVQEVEDWILGNIKKNTSEMLLLTGPVGCGKSV 97
LAIH K Q+ DW+L + S +++ T G V
Sbjct: 397 LAIHGDKAQDERDWVLNEFRTGKSPIMVATDVASRGIDV 435
>SPAC2F3.10 |||GARP complex subunit Vps54 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 949
Score = 29.1 bits (62), Expect = 0.28
Identities = 21/81 (25%), Positives = 36/81 (44%), Gaps = 5/81 (6%)
Query: 2 FDFDETEPPPQKLKSDVNKQGTSSPAKFSKSNTIKPMIFNIIDQNHI---RNFDPVNIN- 57
+D D+ P L + + S S N P IF+++ + HI + D N N
Sbjct: 148 YDIDDNVNPSSSLVDNFSISSVPSVFFQSDFNLDDPQIFDVVSE-HIDITQTSDAPNSNR 206
Query: 58 DLAIHNKKVQEVEDWILGNIK 78
+L ++N +QE W L ++
Sbjct: 207 NLLLNNSMLQEKISWYLDTVE 227
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 28.7 bits (61), Expect = 0.36
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 81 TSEMLLLTGPVGCGKSVTVLIIAKKHNVKIT 111
T+E LLL G G GK+ T+ ++A K+T
Sbjct: 466 TNEPLLLVGETGTGKTTTIQLLAGLLGQKVT 496
Score = 25.0 bits (52), Expect = 4.5
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 83 EMLLLTGPVGCGKSVTVLIIAK 104
E +LL G GCGK+ I+A+
Sbjct: 1187 EPVLLVGDTGCGKTTVCQILAE 1208
>SPAC1834.02 |aro1||pentafunctional aromatic polypeptide Aro1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1573
Score = 28.7 bits (61), Expect = 0.36
Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
Query: 71 DWILGNIKKNTSEMLLLTGPVGCGKSVTVLIIAKKHNVKITE 112
D + G+I KN S ++L G G GK+ IIAK+ N K +
Sbjct: 854 DPLKGSISKNAS--IILIGMRGAGKTTIGKIIAKQLNFKFLD 893
>SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1428
Score = 28.7 bits (61), Expect = 0.36
Identities = 10/30 (33%), Positives = 19/30 (63%)
Query: 80 NTSEMLLLTGPVGCGKSVTVLIIAKKHNVK 109
N S++L+++G GCGKS + +++ K
Sbjct: 645 NNSQLLIISGDTGCGKSTQIPAFLLENSTK 674
>SPCC24B10.10c |||mitochondrial outer membrane ATPase Msp1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 355
Score = 27.1 bits (57), Expect = 1.1
Identities = 11/21 (52%), Positives = 15/21 (71%)
Query: 85 LLLTGPVGCGKSVTVLIIAKK 105
LLL GP GCGK++ +AK+
Sbjct: 128 LLLYGPPGCGKTMLAKALAKQ 148
>SPBP23A10.13 |orc4|orp4|origin recognition complex subunit
Orc4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 972
Score = 26.2 bits (55), Expect = 1.9
Identities = 14/51 (27%), Positives = 23/51 (45%)
Query: 62 HNKKVQEVEDWILGNIKKNTSEMLLLTGPVGCGKSVTVLIIAKKHNVKITE 112
H + ++ W+ I +++ GP G GKSV V I + +I E
Sbjct: 555 HMDEQTKLYQWVRQTIVLGEGNSVIIVGPRGSGKSVLVDDILSRAAQEINE 605
>SPAC2F7.03c |pom1||DYRK family protein kinase
Pom1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1087
Score = 26.2 bits (55), Expect = 1.9
Identities = 12/44 (27%), Positives = 19/44 (43%)
Query: 5 DETEPPPQKLKSDVNKQGTSSPAKFSKSNTIKPMIFNIIDQNHI 48
D PPP S Q + P K + ++ P+ N D+ H+
Sbjct: 510 DSASPPPVPRLSITRSQVSREPEKPEEIPSVPPLPSNFKDKGHV 553
>SPBC23E6.07c |rfc1||DNA replication factor C complex subunit
Rfc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 934
Score = 26.2 bits (55), Expect = 1.9
Identities = 18/75 (24%), Positives = 35/75 (46%), Gaps = 13/75 (17%)
Query: 51 FDPVNINDLAIHNKKVQEVEDWILG---NIKKNTSE----------MLLLTGPVGCGKSV 97
+ P ++ D+ + VQ+++ W+ N K N ++ +LL+GP G GK+
Sbjct: 365 YAPTSLKDICGNKGVVQKLQKWLQDYHKNRKSNFNKPGPDGLGLYKAVLLSGPPGIGKTT 424
Query: 98 TVLIIAKKHNVKITE 112
++AK + E
Sbjct: 425 AAHLVAKLEGYDVLE 439
>SPAC16A10.04 |rho4||Rho family GTPase Rho4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 203
Score = 25.8 bits (54), Expect = 2.6
Identities = 9/26 (34%), Positives = 17/26 (65%)
Query: 78 KKNTSEMLLLTGPVGCGKSVTVLIIA 103
K TS+ L++ G GCGK+ +++ +
Sbjct: 10 KSETSKKLVVVGDGGCGKTCLLIVFS 35
>SPBC25B2.06c |btb2||BTB/POZ domain protein Btb2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 284
Score = 25.4 bits (53), Expect = 3.4
Identities = 14/35 (40%), Positives = 19/35 (54%)
Query: 14 LKSDVNKQGTSSPAKFSKSNTIKPMIFNIIDQNHI 48
L+SD G SS A++ +N I M + QNHI
Sbjct: 209 LESDKLTVGASSMARYKLANEIVKMRASFRKQNHI 243
>SPCC965.04c |||mitochondrial inner membrane i-AAA protease complex
subunit Yme1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 709
Score = 25.4 bits (53), Expect = 3.4
Identities = 11/24 (45%), Positives = 16/24 (66%)
Query: 85 LLLTGPVGCGKSVTVLIIAKKHNV 108
+LLTGP G GK++ +A + NV
Sbjct: 303 VLLTGPPGTGKTMLARAVAGEANV 326
>SPBC19G7.01c |msh2|swi8, mut3, SPBC24C6.12c|MutS protein homolog
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 982
Score = 25.4 bits (53), Expect = 3.4
Identities = 10/24 (41%), Positives = 17/24 (70%)
Query: 76 NIKKNTSEMLLLTGPVGCGKSVTV 99
N++ +SE+L++TGP GKS +
Sbjct: 708 NLEHGSSELLIITGPNMGGKSTYI 731
>SPBC56F2.07c |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 809
Score = 25.0 bits (52), Expect = 4.5
Identities = 10/19 (52%), Positives = 13/19 (68%)
Query: 85 LLLTGPVGCGKSVTVLIIA 103
+LL GP GC K++T IA
Sbjct: 585 VLLYGPPGCSKTITAKAIA 603
>SPBC18H10.17c |||mitochondrial ribosomal protein subunit Mrp49
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 175
Score = 25.0 bits (52), Expect = 4.5
Identities = 9/26 (34%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Query: 113 WITPIDIEFPNDNGMQISIFYKAFSY 138
W+ + +EFPN++ Q S+F + +Y
Sbjct: 58 WVPLLKVEFPNESMFQ-SVFMQLLNY 82
>SPAC607.10 |spo3||sporulation protein Spo3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1028
Score = 24.6 bits (51), Expect = 5.9
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 22 GTSSPAKFSKSNTIKPMIFNIIDQN 46
GT S A+ K+ +K M + +ID+N
Sbjct: 783 GTHSRAEVHKNEVLKRMAYYLIDEN 807
>SPBC902.02c |ctf18|chl12|DNA replication factor C complex subunit
Ctf18|Schizosaccharomyces pombe|chr 2|||Manual
Length = 960
Score = 24.6 bits (51), Expect = 5.9
Identities = 10/29 (34%), Positives = 17/29 (58%)
Query: 84 MLLLTGPVGCGKSVTVLIIAKKHNVKITE 112
+++LTG G GK+ +IA + K+ E
Sbjct: 418 IMMLTGLAGAGKTTLAHVIAHQAGYKVLE 446
>SPCC663.03 |pmd1||leptomycin efflux transporter
Pmd1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1362
Score = 24.2 bits (50), Expect = 7.8
Identities = 9/29 (31%), Positives = 15/29 (51%)
Query: 76 NIKKNTSEMLLLTGPVGCGKSVTVLIIAK 104
N+ + + G GCGKS T+ +I +
Sbjct: 1141 NLTVKPGQFVAFVGSSGCGKSTTIGLIER 1169
>SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 987
Score = 24.2 bits (50), Expect = 7.8
Identities = 9/20 (45%), Positives = 13/20 (65%)
Query: 121 FPNDNGMQISIFYKAFSYCF 140
F ND + + +FY+ FSY F
Sbjct: 205 FLNDRVINLFLFYEKFSYLF 224
>SPBC947.11c |elg1||DNA replication factor C complex subunit
Elg1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 920
Score = 24.2 bits (50), Expect = 7.8
Identities = 10/31 (32%), Positives = 18/31 (58%)
Query: 82 SEMLLLTGPVGCGKSVTVLIIAKKHNVKITE 112
S +L+TG G GK+ + I ++ N ++ E
Sbjct: 425 SNWMLVTGVTGIGKTSCLYAICRELNFEVVE 455
>SPAC1834.07 |klp3|krp1|kinesin-like protein
Klp3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 554
Score = 24.2 bits (50), Expect = 7.8
Identities = 12/43 (27%), Positives = 21/43 (48%)
Query: 47 HIRNFDPVNINDLAIHNKKVQEVEDWILGNIKKNTSEMLLLTG 89
H NFD +IN L + + D +L + K+ S+++ G
Sbjct: 419 HRHNFDSDSINRLYAEAQLELKQRDGVLSSTKQQLSDLMTALG 461
>SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 779
Score = 24.2 bits (50), Expect = 7.8
Identities = 9/21 (42%), Positives = 14/21 (66%)
Query: 85 LLLTGPVGCGKSVTVLIIAKK 105
+LL GP GCGK++ +A +
Sbjct: 529 VLLWGPPGCGKTLLAKAVANE 549
>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 4196
Score = 24.2 bits (50), Expect = 7.8
Identities = 9/34 (26%), Positives = 17/34 (50%)
Query: 13 KLKSDVNKQGTSSPAKFSKSNTIKPMIFNIIDQN 46
++K ++NK P KF ++ + N + QN
Sbjct: 2951 EIKKNLNKLNEFQPLKFDSEESVTEIFMNNVFQN 2984
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.136 0.408
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 738,599
Number of Sequences: 5004
Number of extensions: 29688
Number of successful extensions: 145
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 117
Number of HSP's gapped (non-prelim): 31
length of query: 142
length of database: 2,362,478
effective HSP length: 66
effective length of query: 76
effective length of database: 2,032,214
effective search space: 154448264
effective search space used: 154448264
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 50 (24.2 bits)
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