Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA005367-TA|BGIBMGA005367-PA|IPR004582|Checkpoint protein
Rad24
(142 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0326 + 7474352-7474448,7474913-7474977,7475105-7475191,747... 53 1e-07
03_02_0445 - 8551912-8552047,8552729-8552896,8553785-8554068,855... 42 2e-04
02_05_0922 - 32742863-32742958,32743081-32743136,32743253-327433... 35 0.022
12_01_0833 - 7730761-7731030,7731171-7731425,7731565-7731736,773... 33 0.066
02_04_0067 - 19425019-19425288,19425393-19425647,19425766-194259... 31 0.27
02_04_0437 - 22938263-22938273,22938345-22938444,22938727-229389... 31 0.47
09_06_0076 + 20710482-20710670,20711313-20711547,20711664-207116... 30 0.62
04_04_0840 + 28570642-28570809,28570919-28571025,28571137-285712... 28 2.5
01_01_0682 - 5244805-5244919,5246468-5246613,5246813-5246994,524... 28 2.5
01_01_0573 + 4253484-4254653,4255526-4255735,4255842-4255937,425... 28 3.3
07_01_0839 + 6823028-6823074,6823449-6823992,6827017-6828258 27 5.8
03_06_0267 - 32751431-32751489,32751600-32751645,32751886-327519... 27 7.6
01_03_0179 + 13500413-13500768,13502522-13502642,13502876-135029... 27 7.6
>03_02_0326 +
7474352-7474448,7474913-7474977,7475105-7475191,
7475393-7475440,7476086-7476142,7476588-7476687,
7476875-7477185,7477298-7477667,7478745-7478876,
7479362-7479575,7479650-7479710,7480098-7480292
Length = 578
Score = 52.8 bits (121), Expect = 1e-07
Identities = 26/74 (35%), Positives = 44/74 (59%), Gaps = 4/74 (5%)
Query: 48 IRNFDPVNINDLAIHNKKVQEVEDWILGNIK--KNT--SEMLLLTGPVGCGKSVTVLIIA 103
+ + P ++ +L++H KKV++V+ W+ ++ K T L+LTG G GKS T+ IA
Sbjct: 66 VDKYKPHSLAELSVHKKKVEDVKKWLDEKLRAPKGTFGGWTLVLTGQAGVGKSATIKAIA 125
Query: 104 KKHNVKITEWITPI 117
+ V+I EW P+
Sbjct: 126 AELGVEICEWTAPV 139
>03_02_0445 -
8551912-8552047,8552729-8552896,8553785-8554068,
8554143-8555386,8556901-8556967,8557059-8557150,
8557269-8557480,8558541-8558623,8559092-8559122,
8559770-8559951,8560557-8560616,8561092-8561289,
8561485-8561539,8562740-8562855,8563012-8563176,
8563310-8563483,8564134-8564333,8564778-8564882,
8565063-8565126,8566452-8566718
Length = 1300
Score = 41.9 bits (94), Expect = 2e-04
Identities = 23/79 (29%), Positives = 37/79 (46%), Gaps = 1/79 (1%)
Query: 44 DQNHIRNFDPVNINDLAIHNKKVQEVEDWILGNIKKNTSEMLLLTGPVGCGKSVTVLIIA 103
D+ RN + N +++ + Q+ D + +LL+TGPVGCGKS V A
Sbjct: 401 DERGHRNKQNIVTNG-SMNGRSCQDGSDTDYSEDASDYENVLLITGPVGCGKSAAVFACA 459
Query: 104 KKHNVKITEWITPIDIEFP 122
++ + E P + FP
Sbjct: 460 REQGFNVIELNMPKTVVFP 478
>02_05_0922 -
32742863-32742958,32743081-32743136,32743253-32743382,
32743768-32743849,32744038-32744227,32744290-32744369,
32744769-32744985,32745740-32745923
Length = 344
Score = 35.1 bits (77), Expect = 0.022
Identities = 19/58 (32%), Positives = 32/58 (55%), Gaps = 4/58 (6%)
Query: 48 IRNFDPVNINDLAIHNKKVQEVEDWILGNIKKNTSEMLLLTGPVGCGKSVTVLIIAKK 105
+ + P ++ D+A H +++ D I +N LLL GP G GK+ T+L +A+K
Sbjct: 41 VEKYRPQSLGDVAAH----RDIVDTIDRLTNENRLPHLLLYGPPGTGKTSTILAVARK 94
>12_01_0833 -
7730761-7731030,7731171-7731425,7731565-7731736,
7731873-7732106,7732362-7732495,7734116-7734199,
7735086-7735376,7735566-7735898,7736351-7736424,
7736558-7736653,7736876-7737029,7737118-7737221,
7737325-7737485,7737774-7738087,7738950-7739231,
7739909-7740210,7740513-7740713,7740924-7741014,
7741424-7741500,7741595-7741754,7742026-7742110,
7742194-7742288
Length = 1322
Score = 33.5 bits (73), Expect = 0.066
Identities = 20/51 (39%), Positives = 29/51 (56%), Gaps = 3/51 (5%)
Query: 62 HNKKVQEVEDWILGNIKKNTSEMLLLTGPVGCGKSVTVLIIAKKHNVKITE 112
H KVQ +E+ + G IK S + LL GP GCGK+ + +A + N + E
Sbjct: 14 HQSKVQILEN-VSGIIKP--SRITLLLGPPGCGKTTLLKALAGRLNKSLKE 61
>02_04_0067 -
19425019-19425288,19425393-19425647,19425766-19425937,
19426069-19426302,19426523-19426656,19427663-19427746,
19428355-19428645,19428788-19429120,19429317-19429390,
19429464-19429644,19429993-19430096,19430232-19430392,
19430727-19431040,19431583-19431864,19432431-19432732,
19433176-19433266,19433368-19433421,19438917-19438993,
19439081-19439240,19439410-19439494,19439574-19440130
Length = 1404
Score = 31.5 bits (68), Expect = 0.27
Identities = 15/32 (46%), Positives = 21/32 (65%), Gaps = 2/32 (6%)
Query: 82 SEMLLLTGPVGCGKSVTVLIIAKK--HNVKIT 111
S + LL GP GCGK+ +L +A K N+K+T
Sbjct: 185 SRLTLLLGPPGCGKTTLLLALAGKLDKNLKVT 216
>02_04_0437 -
22938263-22938273,22938345-22938444,22938727-22938908,
22938989-22939092,22939792-22939857,22940032-22940105,
22940241-22940309,22940902-22941028,22941740-22942971,
22943163-22943486,22943500-22943793
Length = 860
Score = 30.7 bits (66), Expect = 0.47
Identities = 16/58 (27%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
Query: 2 FDFDETEPPPQKLKS---DVNKQGTSSPAKFSKSNTIKPMIFNIIDQNHIRNFDPVNI 56
+ +++ E P ++KS N T AK S S+ ++P I + QN ++ D N+
Sbjct: 463 YRYEQREKTPTRVKSYPAQANHVRTGLAAKSSPSSAVQPSIMKFLSQNKRKHEDSCNL 520
>09_06_0076 +
20710482-20710670,20711313-20711547,20711664-20711689,
20712000-20712293,20712603-20712728,20712827-20712896,
20712992-20713182,20713394-20713519,20713878-20714279,
20714364-20714758,20714861-20715315,20715403-20715524,
20715653-20715693,20716026-20716129,20716363-20716576,
20717667-20717780,20718576-20718612
Length = 1046
Score = 30.3 bits (65), Expect = 0.62
Identities = 12/48 (25%), Positives = 24/48 (50%)
Query: 73 ILGNIKKNTSEMLLLTGPVGCGKSVTVLIIAKKHNVKITEWITPIDIE 120
I + K +L+T V CG ++ L+ +HN + +W + + +E
Sbjct: 209 IYSAVNKGVELSMLMTNSVACGLNIYHLLSIYRHNKERKKWYSTLSLE 256
>04_04_0840 +
28570642-28570809,28570919-28571025,28571137-28571238,
28571786-28571981,28572691-28572819,28572869-28572895,
28572896-28573090,28573182-28573292
Length = 344
Score = 28.3 bits (60), Expect = 2.5
Identities = 17/72 (23%), Positives = 35/72 (48%), Gaps = 4/72 (5%)
Query: 32 SNTIKPMIFNIIDQNHIRNFDPVNINDLAIHNKKVQEVEDWILGNIKKNTSEMLLLTGPV 91
S++ P + + D + + P + D+ ++ V ++D N L+L+GP
Sbjct: 4 SSSSAPDLADAYDIPWVEKYRPTRVADVGGNSDAVARLQDIARDGNMPN----LILSGPP 59
Query: 92 GCGKSVTVLIIA 103
G GK+ ++L +A
Sbjct: 60 GTGKTTSILSLA 71
>01_01_0682 -
5244805-5244919,5246468-5246613,5246813-5246994,
5247069-5247295,5247382-5247467,5247564-5247656,
5247964-5248118,5248407-5248490,5248589-5248768,
5249587-5249828,5249927-5249982
Length = 521
Score = 28.3 bits (60), Expect = 2.5
Identities = 13/39 (33%), Positives = 17/39 (43%)
Query: 59 LAIHNKKVQEVEDWILGNIKKNTSEMLLLTGPVGCGKSV 97
L+IH K Q DW+L K S ++ T G V
Sbjct: 338 LSIHGDKSQAERDWVLSEFKSGKSPIMTATDVAARGLDV 376
>01_01_0573 +
4253484-4254653,4255526-4255735,4255842-4255937,
4256034-4256255,4256829-4257023,4257097-4257243,
4257323-4257472,4257762-4257892,4257978-4258194
Length = 845
Score = 27.9 bits (59), Expect = 3.3
Identities = 12/43 (27%), Positives = 24/43 (55%)
Query: 31 KSNTIKPMIFNIIDQNHIRNFDPVNINDLAIHNKKVQEVEDWI 73
K N ++ ++++ ++ + + D V D K+QEVEDW+
Sbjct: 617 KKNAVESYVYDMRNKLYDKYNDFVTAEDKEAFIAKLQEVEDWL 659
>07_01_0839 + 6823028-6823074,6823449-6823992,6827017-6828258
Length = 610
Score = 27.1 bits (57), Expect = 5.8
Identities = 14/43 (32%), Positives = 25/43 (58%)
Query: 67 QEVEDWILGNIKKNTSEMLLLTGPVGCGKSVTVLIIAKKHNVK 109
+E++D L ++M+LL + GK +VL++ +K NVK
Sbjct: 269 KEIKDLCLRLTVTLCNQMILLYKRIAPGKVASVLMLMEKENVK 311
>03_06_0267 -
32751431-32751489,32751600-32751645,32751886-32751960,
32752045-32752114,32752288-32752386,32752505-32752641,
32753040-32753221,32753314-32753482,32753824-32753856,
32753958-32754068,32754184-32754295,32755592-32755727,
32756264-32756291
Length = 418
Score = 26.6 bits (56), Expect = 7.6
Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 4/41 (9%)
Query: 69 VEDWILGNIKKNTSEM----LLLTGPVGCGKSVTVLIIAKK 105
V D + N+KK +E LL GP G GK V+ + K+
Sbjct: 81 VHDQVAQNLKKLVAEQDCPHLLFYGPSGSGKKTLVMALIKQ 121
>01_03_0179 +
13500413-13500768,13502522-13502642,13502876-13502998,
13504409-13504497,13504612-13504696,13504852-13505011,
13505096-13505160,13505296-13505349,13505437-13505527,
13505685-13505986,13506084-13506365,13506451-13506764,
13506920-13507080,13507202-13507305,13507379-13507535,
13507652-13507896,13507995-13508327,13508428-13508751,
13508816-13508899,13509001-13509169,13509610-13509731,
13510538-13510792,13511115-13511252
Length = 1377
Score = 26.6 bits (56), Expect = 7.6
Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
Query: 84 MLLLTGPVGCGKSVTVLIIAKK--HNVKITEWIT 115
M LL GP G GK+ +L +A K N+K++ +T
Sbjct: 231 MTLLLGPPGSGKTTLLLALAGKLEDNLKVSGKVT 264
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.136 0.408
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,311,805
Number of Sequences: 37544
Number of extensions: 153885
Number of successful extensions: 565
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 555
Number of HSP's gapped (non-prelim): 13
length of query: 142
length of database: 14,793,348
effective HSP length: 75
effective length of query: 67
effective length of database: 11,977,548
effective search space: 802495716
effective search space used: 802495716
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 56 (26.6 bits)
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