Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA005367-TA|BGIBMGA005367-PA|IPR004582|Checkpoint protein
Rad24
(142 letters)
Database: celegans
27,539 sequences; 12,573,161 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81521-2|CAB04224.1| 514|Caenorhabditis elegans Hypothetical pr... 53 9e-08
AF076840-1|AAC95522.1| 514|Caenorhabditis elegans Rad17-like pr... 53 9e-08
Z68879-1|CAA93081.1| 850|Caenorhabditis elegans Hypothetical pr... 39 0.002
Z66567-9|CAA91495.1| 1268|Caenorhabditis elegans Hypothetical pr... 33 0.077
Z66562-7|CAA91467.1| 1268|Caenorhabditis elegans Hypothetical pr... 33 0.077
X65055-1|CAA46191.1| 1254|Caenorhabditis elegans P-glycoprotein ... 33 0.077
L23648-10|AAK95878.2| 368|Caenorhabditis elegans Hypothetical p... 31 0.31
Z70268-5|CAJ85767.2| 1204|Caenorhabditis elegans Hypothetical pr... 30 0.72
Z70268-4|CAA94220.3| 1263|Caenorhabditis elegans Hypothetical pr... 30 0.72
Z70268-3|CAA94219.3| 1263|Caenorhabditis elegans Hypothetical pr... 30 0.72
U40947-1|AAC48068.1| 610|Caenorhabditis elegans Hypothetical pr... 30 0.72
Z66562-6|CAA91463.1| 1266|Caenorhabditis elegans Hypothetical pr... 29 0.95
Z92834-8|CAB07394.2| 1589|Caenorhabditis elegans Hypothetical pr... 29 1.3
Z92834-7|CAB07385.2| 1587|Caenorhabditis elegans Hypothetical pr... 29 1.3
Z77666-6|CAB01232.1| 1321|Caenorhabditis elegans Hypothetical pr... 29 1.3
X65054-1|CAA46190.1| 1321|Caenorhabditis elegans P-glycoprotein ... 29 1.3
U33051-1|AAA85507.1| 1587|Caenorhabditis elegans sur-2 protein. 29 1.3
Z93782-3|CAB07855.1| 1294|Caenorhabditis elegans Hypothetical pr... 29 1.7
Z81484-12|CAB03973.1| 1294|Caenorhabditis elegans Hypothetical p... 29 1.7
Z78066-6|CAB51467.1| 2484|Caenorhabditis elegans Hypothetical pr... 29 1.7
Z78066-4|CAB01522.2| 2607|Caenorhabditis elegans Hypothetical pr... 29 1.7
AF067621-1|AAC17540.2| 4368|Caenorhabditis elegans Hypothetical ... 29 1.7
Z34801-6|CAA84329.1| 428|Caenorhabditis elegans Hypothetical pr... 28 2.2
U46673-6|AAC48149.2| 1382|Caenorhabditis elegans P-glycoprotein ... 28 2.2
U23510-13|AAK71392.2| 425|Caenorhabditis elegans Hypothetical p... 28 2.2
U41037-2|AAA82388.3| 651|Caenorhabditis elegans Hypothetical pr... 28 2.9
AL132949-7|CAB61080.1| 1168|Caenorhabditis elegans Hypothetical ... 28 2.9
U80437-18|AAB37629.1| 518|Caenorhabditis elegans Cell division ... 27 3.8
AL032663-5|CAA21765.1| 896|Caenorhabditis elegans Hypothetical ... 27 3.8
AF026212-1|AAF99971.1| 807|Caenorhabditis elegans Hypothetical ... 27 3.8
AC025715-1|ABJ99062.1| 747|Caenorhabditis elegans Paraplegin aa... 27 3.8
AB257343-1|BAE96353.1| 747|Caenorhabditis elegans paraplegin pr... 27 3.8
Z48178-3|CAC42246.1| 1553|Caenorhabditis elegans Hypothetical pr... 27 5.1
Z48178-2|CAA88201.1| 1551|Caenorhabditis elegans Hypothetical pr... 27 5.1
AF036699-3|AAB88360.1| 334|Caenorhabditis elegans Rfc (dna repl... 27 5.1
Z99771-2|CAB16920.1| 1130|Caenorhabditis elegans Hypothetical pr... 27 6.7
Z81555-7|CAB04518.1| 561|Caenorhabditis elegans Hypothetical pr... 27 6.7
Z66513-15|CAA91339.1| 1130|Caenorhabditis elegans Hypothetical p... 27 6.7
U23515-9|AAP82644.1| 360|Caenorhabditis elegans Hypothetical pr... 27 6.7
U23515-8|AAP82645.1| 362|Caenorhabditis elegans Hypothetical pr... 27 6.7
Z69787-8|CAA93640.1| 127|Caenorhabditis elegans Hypothetical pr... 26 8.8
U80444-4|AAB37790.1| 531|Caenorhabditis elegans Importin alpha ... 26 8.8
AF326936-1|AAG49386.1| 531|Caenorhabditis elegans importin beta... 26 8.8
AF040996-1|AAB97172.1| 531|Caenorhabditis elegans importin alph... 26 8.8
>Z81521-2|CAB04224.1| 514|Caenorhabditis elegans Hypothetical
protein F32A11.2 protein.
Length = 514
Score = 52.8 bits (121), Expect = 9e-08
Identities = 23/63 (36%), Positives = 39/63 (61%), Gaps = 2/63 (3%)
Query: 53 PVNINDLAIHNKKVQEVEDWILGNIKKNTSEM--LLLTGPVGCGKSVTVLIIAKKHNVKI 110
P ++L IHNKK+ EV+ W+ ++ ++ + LTGP G GKS TV ++ + N++I
Sbjct: 15 PRRRDELQIHNKKIAEVDHWLKNVFSESNKQLGVMYLTGPAGSGKSTTVEVMCTEQNIEI 74
Query: 111 TEW 113
E+
Sbjct: 75 IEY 77
>AF076840-1|AAC95522.1| 514|Caenorhabditis elegans Rad17-like
protein protein.
Length = 514
Score = 52.8 bits (121), Expect = 9e-08
Identities = 23/63 (36%), Positives = 39/63 (61%), Gaps = 2/63 (3%)
Query: 53 PVNINDLAIHNKKVQEVEDWILGNIKKNTSEM--LLLTGPVGCGKSVTVLIIAKKHNVKI 110
P ++L IHNKK+ EV+ W+ ++ ++ + LTGP G GKS TV ++ + N++I
Sbjct: 15 PRRRDELQIHNKKIAEVDHWLKNVFSESNKQLGVMYLTGPAGSGKSTTVEVMCTEQNIEI 74
Query: 111 TEW 113
E+
Sbjct: 75 IEY 77
>Z68879-1|CAA93081.1| 850|Caenorhabditis elegans Hypothetical
protein K08F4.1 protein.
Length = 850
Score = 38.7 bits (86), Expect = 0.002
Identities = 20/47 (42%), Positives = 30/47 (63%)
Query: 59 LAIHNKKVQEVEDWILGNIKKNTSEMLLLTGPVGCGKSVTVLIIAKK 105
LA +K +EV G I++ +S+MLLL+GP G GKS I+A++
Sbjct: 307 LASLGEKEREVLHMDNGKIRRPSSKMLLLSGPAGLGKSTLARIVARQ 353
>Z66567-9|CAA91495.1| 1268|Caenorhabditis elegans Hypothetical protein
ZK455.7 protein.
Length = 1268
Score = 33.1 bits (72), Expect = 0.077
Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
Query: 60 AIHNKKVQEVEDWILGNIKKNTSEMLLLTGPVGCGKSVTVLIIAKKHN 107
A N++ Q V D N+ N + + L GP GCGKS T+ +I + ++
Sbjct: 1037 AYPNRRRQLVLDGF--NMSANFGQTVALVGPSGCGKSTTIQLIERYYD 1082
Score = 26.2 bits (55), Expect = 8.8
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 80 NTSEMLLLTGPVGCGKSVTVLIIAKKHN 107
N E + L G GCGKS ++ ++ + +N
Sbjct: 402 NPGETVALVGHSGCGKSTSIGLLMRFYN 429
>Z66562-7|CAA91467.1| 1268|Caenorhabditis elegans Hypothetical protein
ZK455.7 protein.
Length = 1268
Score = 33.1 bits (72), Expect = 0.077
Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
Query: 60 AIHNKKVQEVEDWILGNIKKNTSEMLLLTGPVGCGKSVTVLIIAKKHN 107
A N++ Q V D N+ N + + L GP GCGKS T+ +I + ++
Sbjct: 1037 AYPNRRRQLVLDGF--NMSANFGQTVALVGPSGCGKSTTIQLIERYYD 1082
Score = 26.2 bits (55), Expect = 8.8
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 80 NTSEMLLLTGPVGCGKSVTVLIIAKKHN 107
N E + L G GCGKS ++ ++ + +N
Sbjct: 402 NPGETVALVGHSGCGKSTSIGLLMRFYN 429
>X65055-1|CAA46191.1| 1254|Caenorhabditis elegans P-glycoprotein C
protein.
Length = 1254
Score = 33.1 bits (72), Expect = 0.077
Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
Query: 60 AIHNKKVQEVEDWILGNIKKNTSEMLLLTGPVGCGKSVTVLIIAKKHN 107
A N++ Q V D N+ N + + L GP GCGKS T+ +I + ++
Sbjct: 1023 AYPNRRRQLVLDGF--NMSANFGQTVALVGPSGCGKSTTIQLIERYYD 1068
Score = 26.2 bits (55), Expect = 8.8
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 80 NTSEMLLLTGPVGCGKSVTVLIIAKKHN 107
N E + L G GCGKS ++ ++ + +N
Sbjct: 402 NPGETVALVGHSGCGKSTSIGLLMRFYN 429
>L23648-10|AAK95878.2| 368|Caenorhabditis elegans Hypothetical
protein F44B9.8 protein.
Length = 368
Score = 31.1 bits (67), Expect = 0.31
Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 4/58 (6%)
Query: 48 IRNFDPVNINDLAIHNKKVQEVEDWILGNIKKNTSEMLLLTGPVGCGKSVTVLIIAKK 105
+ + P +++L H + V+ + +I + T LL GP G GK+ TVL A++
Sbjct: 32 VEKYRPSKLDELVAHEQIVKTLTKFI----ENRTLPHLLFYGPPGTGKTTTVLAAARQ 85
>Z70268-5|CAJ85767.2| 1204|Caenorhabditis elegans Hypothetical protein
T21E8.1b protein.
Length = 1204
Score = 29.9 bits (64), Expect = 0.72
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 76 NIKKNTSEMLLLTGPVGCGKSVTVLIIAK 104
N+K + + L L GP GCGKS + ++ +
Sbjct: 979 NLKVDPGKTLALVGPSGCGKSTIISLLER 1007
>Z70268-4|CAA94220.3| 1263|Caenorhabditis elegans Hypothetical protein
T21E8.1a protein.
Length = 1263
Score = 29.9 bits (64), Expect = 0.72
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 76 NIKKNTSEMLLLTGPVGCGKSVTVLIIAK 104
N+K + + L L GP GCGKS + ++ +
Sbjct: 1038 NLKVDPGKTLALVGPSGCGKSTIISLLER 1066
>Z70268-3|CAA94219.3| 1263|Caenorhabditis elegans Hypothetical protein
T21E8.2 protein.
Length = 1263
Score = 29.9 bits (64), Expect = 0.72
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 76 NIKKNTSEMLLLTGPVGCGKSVTVLIIAK 104
N+K + + L L GP GCGKS + ++ +
Sbjct: 1038 NLKVDPGKTLALVGPSGCGKSTIISLLER 1066
>U40947-1|AAC48068.1| 610|Caenorhabditis elegans Hypothetical
protein R03E9.2 protein.
Length = 610
Score = 29.9 bits (64), Expect = 0.72
Identities = 17/71 (23%), Positives = 33/71 (46%), Gaps = 2/71 (2%)
Query: 63 NKKVQEVEDWILGNIKKNTSEMLLLTGPVGCGKSVTVLIIAKKHNVKITEWITPIDIEFP 122
NK++Q+ D G K N+S L+T + + + N++ TP+ ++
Sbjct: 467 NKELQQYGDLETGKFKPNSSSHALIT--LSLVNETSEDLTRFLQNIQTDNNFTPLGLQMS 524
Query: 123 NDNGMQISIFY 133
D+G+ +S Y
Sbjct: 525 EDDGVSVSANY 535
>Z66562-6|CAA91463.1| 1266|Caenorhabditis elegans Hypothetical protein
F42E11.1 protein.
Length = 1266
Score = 29.5 bits (63), Expect = 0.95
Identities = 11/32 (34%), Positives = 19/32 (59%)
Query: 76 NIKKNTSEMLLLTGPVGCGKSVTVLIIAKKHN 107
N+ E + L GP GCGKS ++ +I + ++
Sbjct: 1049 NMSAQFGETVALVGPSGCGKSTSIQLIERYYD 1080
Score = 26.6 bits (56), Expect = 6.7
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 80 NTSEMLLLTGPVGCGKSVTVLIIAKKHN 107
N E + L G GCGKS ++ ++ + +N
Sbjct: 400 NPGETIALVGHSGCGKSTSIGLLMRFYN 427
>Z92834-8|CAB07394.2| 1589|Caenorhabditis elegans Hypothetical
protein F39B2.4b protein.
Length = 1589
Score = 29.1 bits (62), Expect = 1.3
Identities = 12/41 (29%), Positives = 20/41 (48%)
Query: 11 PQKLKSDVNKQGTSSPAKFSKSNTIKPMIFNIIDQNHIRNF 51
P + + T SP + N IK I +++++NH R F
Sbjct: 5 PGSAEDTIEMDDTCSPQFVQEVNRIKSQIKSLVEENHTRKF 45
>Z92834-7|CAB07385.2| 1587|Caenorhabditis elegans Hypothetical
protein F39B2.4a protein.
Length = 1587
Score = 29.1 bits (62), Expect = 1.3
Identities = 12/41 (29%), Positives = 20/41 (48%)
Query: 11 PQKLKSDVNKQGTSSPAKFSKSNTIKPMIFNIIDQNHIRNF 51
P + + T SP + N IK I +++++NH R F
Sbjct: 5 PGSAEDTIEMDDTCSPQFVQEVNRIKSQIKSLVEENHTRKF 45
>Z77666-6|CAB01232.1| 1321|Caenorhabditis elegans Hypothetical
protein K08E7.9 protein.
Length = 1321
Score = 29.1 bits (62), Expect = 1.3
Identities = 10/33 (30%), Positives = 20/33 (60%)
Query: 76 NIKKNTSEMLLLTGPVGCGKSVTVLIIAKKHNV 108
N++ N + + L G GCGKS + ++ + ++V
Sbjct: 438 NLRVNAGQTVALVGSSGCGKSTIISLLLRYYDV 470
Score = 27.1 bits (57), Expect = 5.1
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 83 EMLLLTGPVGCGKSVTVLIIAK 104
+ L L GP GCGKS V ++ +
Sbjct: 1106 QTLALVGPSGCGKSTVVALLER 1127
>X65054-1|CAA46190.1| 1321|Caenorhabditis elegans P-glycoprotein A
protein.
Length = 1321
Score = 29.1 bits (62), Expect = 1.3
Identities = 10/33 (30%), Positives = 20/33 (60%)
Query: 76 NIKKNTSEMLLLTGPVGCGKSVTVLIIAKKHNV 108
N++ N + + L G GCGKS + ++ + ++V
Sbjct: 438 NLRVNAGQTVALVGSSGCGKSTIISLLLRYYDV 470
Score = 27.1 bits (57), Expect = 5.1
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 83 EMLLLTGPVGCGKSVTVLIIAK 104
+ L L GP GCGKS V ++ +
Sbjct: 1106 QTLALVGPSGCGKSTVVALLER 1127
>U33051-1|AAA85507.1| 1587|Caenorhabditis elegans sur-2 protein.
Length = 1587
Score = 29.1 bits (62), Expect = 1.3
Identities = 12/41 (29%), Positives = 20/41 (48%)
Query: 11 PQKLKSDVNKQGTSSPAKFSKSNTIKPMIFNIIDQNHIRNF 51
P + + T SP + N IK I +++++NH R F
Sbjct: 5 PGSAEDTIEMDDTCSPQFVQEVNRIKSQIKSLVEENHTRKF 45
>Z93782-3|CAB07855.1| 1294|Caenorhabditis elegans Hypothetical protein
C47A10.1 protein.
Length = 1294
Score = 28.7 bits (61), Expect = 1.7
Identities = 10/32 (31%), Positives = 18/32 (56%)
Query: 76 NIKKNTSEMLLLTGPVGCGKSVTVLIIAKKHN 107
N+ + L L GP GCGKS + ++ + ++
Sbjct: 1052 NVHVKPGQTLALVGPSGCGKSTVISLLERLYD 1083
>Z81484-12|CAB03973.1| 1294|Caenorhabditis elegans Hypothetical
protein C47A10.1 protein.
Length = 1294
Score = 28.7 bits (61), Expect = 1.7
Identities = 10/32 (31%), Positives = 18/32 (56%)
Query: 76 NIKKNTSEMLLLTGPVGCGKSVTVLIIAKKHN 107
N+ + L L GP GCGKS + ++ + ++
Sbjct: 1052 NVHVKPGQTLALVGPSGCGKSTVISLLERLYD 1083
>Z78066-6|CAB51467.1| 2484|Caenorhabditis elegans Hypothetical protein
W06A7.3c protein.
Length = 2484
Score = 28.7 bits (61), Expect = 1.7
Identities = 20/74 (27%), Positives = 36/74 (48%), Gaps = 3/74 (4%)
Query: 16 SDVNKQGTSSPAKFSKSNTIKPMIFNIIDQNHIRNFD-PVNINDLAIHNKKVQEVEDWIL 74
SDVN+Q S K K +P + + N + P+ + + A ++E+ +WI+
Sbjct: 1499 SDVNEQDEESTLKILKVVPSEPSLLELDFTNDPKVIHVPIPLMEPA--TMYLEEMVEWII 1556
Query: 75 GNIKKNTSEMLLLT 88
+ K SEM ++T
Sbjct: 1557 ADAVKEVSEMEVVT 1570
>Z78066-4|CAB01522.2| 2607|Caenorhabditis elegans Hypothetical protein
W06A7.3a protein.
Length = 2607
Score = 28.7 bits (61), Expect = 1.7
Identities = 20/74 (27%), Positives = 36/74 (48%), Gaps = 3/74 (4%)
Query: 16 SDVNKQGTSSPAKFSKSNTIKPMIFNIIDQNHIRNFD-PVNINDLAIHNKKVQEVEDWIL 74
SDVN+Q S K K +P + + N + P+ + + A ++E+ +WI+
Sbjct: 1499 SDVNEQDEESTLKILKVVPSEPSLLELDFTNDPKVIHVPIPLMEPA--TMYLEEMVEWII 1556
Query: 75 GNIKKNTSEMLLLT 88
+ K SEM ++T
Sbjct: 1557 ADAVKEVSEMEVVT 1570
>AF067621-1|AAC17540.2| 4368|Caenorhabditis elegans Hypothetical
protein F55F10.1 protein.
Length = 4368
Score = 28.7 bits (61), Expect = 1.7
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 82 SEMLLLTGPVGCGKSVTVLIIAKKHNVKIT 111
S+ +LL G GCGKS TV+ +A+ IT
Sbjct: 1349 SKPILLEGAPGCGKSSTVMALAQLTGNPIT 1378
>Z34801-6|CAA84329.1| 428|Caenorhabditis elegans Hypothetical
protein F59A2.4a protein.
Length = 428
Score = 28.3 bits (60), Expect = 2.2
Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 3/51 (5%)
Query: 70 EDWILGNIKKNTSEMLLLTGPVGCGKSVTVLIIAKKHNVKITEWITPIDIE 120
E+ GN K LLL GP GK+ I+ N + + TPI +E
Sbjct: 102 EEQAAGNSNKAKGPRLLLVGPTDVGKTTVSRILC---NYSVRQGRTPIFVE 149
>U46673-6|AAC48149.2| 1382|Caenorhabditis elegans P-glycoprotein
related protein 10 protein.
Length = 1382
Score = 28.3 bits (60), Expect = 2.2
Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Query: 76 NIKKNTSEMLLLTGPVGCGKSVTVLIIAKKHNVKITEWITPID 118
N+K E + L GP G GKS + + + +N T+ + ID
Sbjct: 1161 NLKVRGGESIALVGPSGSGKSSVISLFQRMYNA--TDGVVIID 1201
>U23510-13|AAK71392.2| 425|Caenorhabditis elegans Hypothetical
protein R12C12.8a protein.
Length = 425
Score = 28.3 bits (60), Expect = 2.2
Identities = 15/49 (30%), Positives = 26/49 (53%)
Query: 58 DLAIHNKKVQEVEDWILGNIKKNTSEMLLLTGPVGCGKSVTVLIIAKKH 106
D+AI+ + + + WIL +++ N+ +L L+ C K IIA H
Sbjct: 165 DIAIYMIQTEHTDLWILDDLQSNSIPLLRLSVAHVCLKKTGERIIASFH 213
>U41037-2|AAA82388.3| 651|Caenorhabditis elegans Hypothetical
protein T24C12.3 protein.
Length = 651
Score = 27.9 bits (59), Expect = 2.9
Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Query: 81 TSEMLLLTGPVGCGKSVTVLIIAKKHNVKITEWITPIDIE 120
+S+ +LL + VL IAKKH+ ++ W+ P DI+
Sbjct: 461 SSDFILLDSNLSVPVMARVLEIAKKHDKQV--WLEPTDID 498
>AL132949-7|CAB61080.1| 1168|Caenorhabditis elegans Hypothetical
protein Y53F4B.9 protein.
Length = 1168
Score = 27.9 bits (59), Expect = 2.9
Identities = 13/41 (31%), Positives = 23/41 (56%)
Query: 70 EDWILGNIKKNTSEMLLLTGPVGCGKSVTVLIIAKKHNVKI 110
ED+ + + + L+L GP G GK+ +AK+ N++I
Sbjct: 804 EDYEVEHQDDDLENPLVLIGPSGVGKTALFRALAKQENMRI 844
>U80437-18|AAB37629.1| 518|Caenorhabditis elegans Cell division
cycle related protein6 protein.
Length = 518
Score = 27.5 bits (58), Expect = 3.8
Identities = 11/33 (33%), Positives = 20/33 (60%)
Query: 72 WILGNIKKNTSEMLLLTGPVGCGKSVTVLIIAK 104
WI+ + + NTS + ++G G GK+ T + + K
Sbjct: 185 WIMKSKETNTSLSIYVSGQPGTGKTATTMRVLK 217
>AL032663-5|CAA21765.1| 896|Caenorhabditis elegans Hypothetical
protein Y75B12B.6 protein.
Length = 896
Score = 27.5 bits (58), Expect = 3.8
Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 3/54 (5%)
Query: 10 PPQKLKSDVNKQGTSSPAKFSKS---NTIKPMIFNIIDQNHIRNFDPVNINDLA 60
P Q K D S+ AKF S T + F + H+ +FD + +ND++
Sbjct: 703 PDQISKDDAASPSVSTAAKFESSCRRRTREEASFVTNYERHVYSFDKIMLNDMS 756
>AF026212-1|AAF99971.1| 807|Caenorhabditis elegans Hypothetical
protein F52G3.3 protein.
Length = 807
Score = 27.5 bits (58), Expect = 3.8
Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 6/65 (9%)
Query: 74 LGNIKKNTSEMLLLTGPVGCGKS--VTVLIIAKKHNVKITEWITPIDIEFPNDNGMQISI 131
LG I +NT+ +L + GP G GK+ T + A K +T ++ + ++
Sbjct: 335 LGPIGRNTTRLLFVDGPGGTGKTFCYTTIYFAFKAKSIVTICVSHHHLSL----NLKFFF 390
Query: 132 FYKAF 136
FYK F
Sbjct: 391 FYKIF 395
>AC025715-1|ABJ99062.1| 747|Caenorhabditis elegans Paraplegin aaa
protease familyprotein 1 protein.
Length = 747
Score = 27.5 bits (58), Expect = 3.8
Identities = 11/24 (45%), Positives = 14/24 (58%)
Query: 119 IEFPNDNGMQISIFYKAFSYCFDQ 142
+ FPN G QI + K F+ FDQ
Sbjct: 655 LSFPNTEGFQIKPYSKKFASTFDQ 678
Score = 27.1 bits (57), Expect = 5.1
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 86 LLTGPVGCGKSVTVLIIAKKHNV 108
LLTGP GCGK++ +A + V
Sbjct: 322 LLTGPPGCGKTLLAKALAAESTV 344
>AB257343-1|BAE96353.1| 747|Caenorhabditis elegans paraplegin
protein.
Length = 747
Score = 27.5 bits (58), Expect = 3.8
Identities = 11/24 (45%), Positives = 14/24 (58%)
Query: 119 IEFPNDNGMQISIFYKAFSYCFDQ 142
+ FPN G QI + K F+ FDQ
Sbjct: 655 LSFPNTEGFQIKPYSKKFASTFDQ 678
Score = 27.1 bits (57), Expect = 5.1
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 86 LLTGPVGCGKSVTVLIIAKKHNV 108
LLTGP GCGK++ +A + V
Sbjct: 322 LLTGPPGCGKTLLAKALAAESTV 344
>Z48178-3|CAC42246.1| 1553|Caenorhabditis elegans Hypothetical protein
C05C10.2b protein.
Length = 1553
Score = 27.1 bits (57), Expect = 5.1
Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Query: 5 DETEPPPQKLKSDVNKQGTSSPAKFSKSNTIKPMIFNIIDQNHIRN-FDPVNINDLAI 61
D+ P P+ VN G S+ S SN+ + I I QN I + +PVN +D+ +
Sbjct: 1315 DDFWPNPKFPMMFVNNTGASTKMGTSTSNSSEKSIVGEIVQNLINDPRNPVNPSDIGV 1372
>Z48178-2|CAA88201.1| 1551|Caenorhabditis elegans Hypothetical protein
C05C10.2a protein.
Length = 1551
Score = 27.1 bits (57), Expect = 5.1
Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Query: 5 DETEPPPQKLKSDVNKQGTSSPAKFSKSNTIKPMIFNIIDQNHIRN-FDPVNINDLAI 61
D+ P P+ VN G S+ S SN+ + I I QN I + +PVN +D+ +
Sbjct: 1315 DDFWPNPKFPMMFVNNTGASTKMGTSTSNSSEKSIVGEIVQNLINDPRNPVNPSDIGV 1372
>AF036699-3|AAB88360.1| 334|Caenorhabditis elegans Rfc (dna
replication factor) familyprotein 2 protein.
Length = 334
Score = 27.1 bits (57), Expect = 5.1
Identities = 9/21 (42%), Positives = 17/21 (80%)
Query: 85 LLLTGPVGCGKSVTVLIIAKK 105
++L+GP GCGK+ +V +A++
Sbjct: 46 IVLSGPPGCGKTTSVWALARE 66
>Z99771-2|CAB16920.1| 1130|Caenorhabditis elegans Hypothetical
protein F54D5.14 protein.
Length = 1130
Score = 26.6 bits (56), Expect = 6.7
Identities = 17/67 (25%), Positives = 35/67 (52%), Gaps = 3/67 (4%)
Query: 58 DLAIHNKKVQEVEDWILG---NIKKNTSEMLLLTGPVGCGKSVTVLIIAKKHNVKITEWI 114
DL +KV E E+ I +I+K TSE + + K+ +++ K+ N +T+ +
Sbjct: 332 DLDAKKRKVLEFEEKIRECEQSIRKKTSEKKYMERTIVNAKNEVRILLEKQGNQDLTKRL 391
Query: 115 TPIDIEF 121
T ++ ++
Sbjct: 392 TKVENDY 398
>Z81555-7|CAB04518.1| 561|Caenorhabditis elegans Hypothetical
protein F58E10.3a protein.
Length = 561
Score = 26.6 bits (56), Expect = 6.7
Identities = 13/39 (33%), Positives = 17/39 (43%)
Query: 59 LAIHNKKVQEVEDWILGNIKKNTSEMLLLTGPVGCGKSV 97
L IH K Q DW+L K + ++L T G V
Sbjct: 404 LCIHGDKNQGERDWVLQEFKAGKTPIMLATDVAARGLDV 442
>Z66513-15|CAA91339.1| 1130|Caenorhabditis elegans Hypothetical
protein F54D5.14 protein.
Length = 1130
Score = 26.6 bits (56), Expect = 6.7
Identities = 17/67 (25%), Positives = 35/67 (52%), Gaps = 3/67 (4%)
Query: 58 DLAIHNKKVQEVEDWILG---NIKKNTSEMLLLTGPVGCGKSVTVLIIAKKHNVKITEWI 114
DL +KV E E+ I +I+K TSE + + K+ +++ K+ N +T+ +
Sbjct: 332 DLDAKKRKVLEFEEKIRECEQSIRKKTSEKKYMERTIVNAKNEVRILLEKQGNQDLTKRL 391
Query: 115 TPIDIEF 121
T ++ ++
Sbjct: 392 TKVENDY 398
>U23515-9|AAP82644.1| 360|Caenorhabditis elegans Hypothetical
protein R144.4a protein.
Length = 360
Score = 26.6 bits (56), Expect = 6.7
Identities = 12/35 (34%), Positives = 18/35 (51%)
Query: 5 DETEPPPQKLKSDVNKQGTSSPAKFSKSNTIKPMI 39
D+ PPP ++ S + TSS A S++ P I
Sbjct: 265 DDAPPPPPRIASKTSVAPTSSRAPLPPSSSFAPSI 299
>U23515-8|AAP82645.1| 362|Caenorhabditis elegans Hypothetical
protein R144.4b protein.
Length = 362
Score = 26.6 bits (56), Expect = 6.7
Identities = 12/35 (34%), Positives = 18/35 (51%)
Query: 5 DETEPPPQKLKSDVNKQGTSSPAKFSKSNTIKPMI 39
D+ PPP ++ S + TSS A S++ P I
Sbjct: 267 DDAPPPPPRIASKTSVAPTSSRAPLPPSSSFAPSI 301
>Z69787-8|CAA93640.1| 127|Caenorhabditis elegans Hypothetical
protein C44C10.10 protein.
Length = 127
Score = 26.2 bits (55), Expect = 8.8
Identities = 12/26 (46%), Positives = 15/26 (57%)
Query: 87 LTGPVGCGKSVTVLIIAKKHNVKITE 112
+TGP GCGKS V I ++TE
Sbjct: 76 ITGPNGCGKSALVRAIGILTGDEVTE 101
>U80444-4|AAB37790.1| 531|Caenorhabditis elegans Importin alpha
family protein 2 protein.
Length = 531
Score = 26.2 bits (55), Expect = 8.8
Identities = 13/57 (22%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
Query: 56 INDLAIHNKKVQEVEDWILGNIKKNTSEMLLLTGPVGCGKSVTVLIIAKKHNVKITE 112
+ L++ N++VQ W L NI ++E + V G ++ ++ ++ + +I+E
Sbjct: 138 VQALSVENERVQYEAAWALTNIVSGSTEQTI--AAVEAGVTIPLIHLSVHQSAQISE 192
>AF326936-1|AAG49386.1| 531|Caenorhabditis elegans importin beta
binding domain proteinprotein.
Length = 531
Score = 26.2 bits (55), Expect = 8.8
Identities = 13/57 (22%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
Query: 56 INDLAIHNKKVQEVEDWILGNIKKNTSEMLLLTGPVGCGKSVTVLIIAKKHNVKITE 112
+ L++ N++VQ W L NI ++E + V G ++ ++ ++ + +I+E
Sbjct: 138 VQALSVENERVQYEAAWALTNIVSGSTEQTI--AAVEAGVTIPLIHLSVHQSAQISE 192
>AF040996-1|AAB97172.1| 531|Caenorhabditis elegans importin alpha 2
protein.
Length = 531
Score = 26.2 bits (55), Expect = 8.8
Identities = 13/57 (22%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
Query: 56 INDLAIHNKKVQEVEDWILGNIKKNTSEMLLLTGPVGCGKSVTVLIIAKKHNVKITE 112
+ L++ N++VQ W L NI ++E + V G ++ ++ ++ + +I+E
Sbjct: 138 VQALSVENERVQYEAAWALTNIVSGSTEQTI--AAVEAGVTIPLIHLSVHQSAQISE 192
Database: celegans
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 12,573,161
Number of sequences in database: 27,539
Lambda K H
0.318 0.136 0.408
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,985,644
Number of Sequences: 27539
Number of extensions: 157311
Number of successful extensions: 642
Number of sequences better than 10.0: 44
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 593
Number of HSP's gapped (non-prelim): 63
length of query: 142
length of database: 12,573,161
effective HSP length: 75
effective length of query: 67
effective length of database: 10,507,736
effective search space: 704018312
effective search space used: 704018312
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 55 (26.2 bits)
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